TCONS_00016904 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016904
Unique NameTCONS_00016904
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016904 ID=TCONS_00016904|Name=TCONS_00016904|organism=Clytia hemisphaerica|type=transcript|length=477bp
tgtATGAAAACCACGCTGGCCACGCAACCTATGTAAGAAGTAAGTTATCG
TCGAATTCTTGATAGGGAGATTTGACTCTAGTATTTTGCTTATACCTTAT
TTCGTTTATATGGATCCAAGTTGCTATACTAGCTATGAAATTTTAATATA
ATCCAAGAATCATATTTTAACCTTCTTGaatataatattttgaaatcaat
GACTTTTGGGATGAAAGAAATCTTCGTAAATGGAATCTCGATTCAATCTT
ATTTGATAGCTCTTTtggattattttgaaatttcaaaatgtgtgAACAGT
ATTCGGCAGCTGAATAGCAAAGATCCAGAGCAGTGGTTCTTAGGGTGGTG
AAGTCTGCACCCCAACGGTTTCCGGCTAGTCTTTTGAGGAGGTTACATCG
TTTCGTAACCTTTGGTGAGACGTTTGTAAGGTGCTCTTTGAAGGAGAGGG
TACGGTCAAGTGTGACGCCAAGATAGA
Run BLAST on NCBI

protein sequence of TCONS_00016904-protein

>TCONS_00016904-protein ID=TCONS_00016904-protein|Name=TCONS_00016904-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
YLGVTLDRTLSFKEHLTNVSPKVTKRCNLLKRLAGNRWGADFTTLRTTAL
DLCYSAAEYCSHILKFQNNPKELSNKIESRFHLRRFLSSQKSLISKYYIQ
EG
Run BLAST on NCBI

transcript from alignment at sc0000253:182910..183386

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016904 ID=TCONS_00016904|Name=TCONS_00016904|organism=Clytia hemisphaerica|type=transcript|length=477bp|location=Sequence derived from alignment at sc0000253:182910..183386 (Clytia hemisphaerica)
TCTATCTTGGCGTCACACTTGACCGTACCCTCTCCTTCAAAGAGCACCTT
ACAAACGTCTCACCAAAGGTTACGAAACGATGTAACCTCCTCAAAAGACT
AGCCGGAAACCGTTGGGGTGCAGACTTCACCACCCTAAGAACCACTGCTC
TGGATCTTTGCTATTCAGCTGCCGAATACTGTTcacacattttgaaattt
caaaataatccaAAAGAGCTATCAAATAAGATTGAATCGAGATTCCATTT
ACGAAGATTTCTTTCATCCCAAAAGTCattgatttcaaaatattatattC
AAGAAGGTTAAAATATGATTCTTGGATTATATTAAAATTTCATAGCTAGT
ATAGCAACTTGGATCCATATAAACGAAATAAGGTATAAGCAAAATACTAG
AGTCAAATCTCCCTATCAAGAATTCGACGATAACTTACTTCTTACATAGG
TTGCGTGGCCAGCGTGGTTTTCATaca

Coding sequence (CDS) from alignment at sc0000253:182910..183386

>TCONS_00016904 ID=TCONS_00016904|Name=TCONS_00016904|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0000253:182910..183386 (Clytia hemisphaerica)
TATCTTGGCGTCACACTTGACCGTACCCTCTCCTTCAAAGAGCACCTTAC
AAACGTCTCACCAAAGGTTACGAAACGATGTAACCTCCTCAAAAGACTAG
CCGGAAACCGTTGGGGTGCAGACTTCACCACCCTAAGAACCACTGCTCTG
GATCTTTGCTATTCAGCTGCCGAATACTGTTcacacattttgaaatttca
aaataatccaAAAGAGCTATCAAATAAGATTGAATCGAGATTCCATTTAC
GAAGATTTCTTTCATCCCAAAAGTCattgatttcaaaatattatattCAA
GAAGGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009465XLOC_009465Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016904-proteinTCONS_00016904-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016904-exon-sc0000253-1491911889:182910..183386TCONS_00016904-exon-sc0000253-1491911889:182910..183386Clytia hemisphaericaexon
TCONS_00016904-exon-sc0000253-1510915933:182910..183386TCONS_00016904-exon-sc0000253-1510915933:182910..183386Clytia hemisphaericaexon
TCONS_00016904-exon-sc0000253-1575043694:182910..183386TCONS_00016904-exon-sc0000253-1575043694:182910..183386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:182910..183386 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.170195	0.478003	0.223108	0.138177	0	0.0881641	0.0880415	0	0	0	0	0	0	0	0	0	0	0	0.14213	0.634239	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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