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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016896 ID=TCONS_00016896|Name=TCONS_00016896|organism=Clytia hemisphaerica|type=transcript|length=1147bp
aacgaccttatttgatttgagacattcgaattcttttcaaaacaaaagaa
atcttttaaacagaatctgttaaagaaaagaacaaatataaaataaaaca
caagaatcacaagacaagtttgttagatATATACAACTCTTAATTTTTAG
TTATACTAATCAaacataaataaatcataaccCTAAAAAATGAAGTCATT
CCATCTTAAGACATACCATCTCGCCATTCTGGTTATCTTCCAATTACTTT
CAAGAGAAGTATCAGGATCCACAACGCAAATCgagacaaaatgtaaacaa
aaagcaaaagatttgtgtCAACAAGAAACAAGCTCCTTTTTAGCAAGGAA
ATGTTGGGAAATAATGTTCCACCAATGCTATGTTGATGATCCAGGAACTG
GTTCCCTCCAAAGGGACAGTTGTATGGTTACCCAAACACCGGAATTTGTT
TGTCTGGATAATGGAGTGTGCTTCATTGTTATATACGAATCTTACGTTTG
CTGAGAAACGTGAAGAGGGGACTCGTTTGACCTTAAAACGGCAAGGCGAT
TGAAAACTCCTCATAAATATAATAATGTCTGGCTCTTACccaataaataa
aaatcatatttattttttatactttcTGCCTCTTTTGTTGTATACGAAac
acatttatttatttaataaaactgaaatgacacaggaaaaaattcTTCTA
ACCAGTTCTAACTTAAACCTTGAAATGGCAAGGAAATCAACCACCTCCTT
ATTAATGTAATGTTATCATTATATCTATCTATCTTTTTATCTATCTGCTA
TCTATCCATCTAGTTATCTACTTTTTCTTCTCATCGTTCATCTCTTTGGA
TCTGTACTGCATCCAATTTTTATTTCCCTCCCtgcaacaataacaaaata
atttaccAAGACTAACACAATTTAAAGTAgtataaaattatttgaaatta
tttgaatAGAAAATGTATATGCTATCGATCATCTAATCAGGTTGTACttg
ttttatatatattttcattttttgcttatGTTCGTGAGAAAAGAATCCAG
TTAAATTATTTTCCGAAAGATTTCTTGTTGTTATGGATACGGACCCCTGA
AATCTAGATTCTACCCTAATTCTGTCTACATCCTTTCTGCAATGAAG Run BLAST on NCBI protein sequence of TCONS_00016896-protein >TCONS_00016896-protein ID=TCONS_00016896-protein|Name=TCONS_00016896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MKSFHLKTYHLAILVIFQLLSREVSGSTTQIETKCKQKAKDLCQQETSSF
LARKCWEIMFHQCYVDDPGTGSLQRDSCMVTQTPEFVCLDNGVCFIVIYE
SYVC Run BLAST on NCBI transcript from alignment at sc0000253:9548..10694 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016896 ID=TCONS_00016896|Name=TCONS_00016896|organism=Clytia hemisphaerica|type=transcript|length=1147bp|location=Sequence derived from alignment at sc0000253:9548..10694 (Clytia hemisphaerica)
CTTCATTGCAGAAAGGATGTAGACAGAATTAGGGTAGAATCTAGATTTCA
GGGGTCCGTATCCATAACAACAAGAAATCTTTCGGAAAATAATTTAACTG
GATTCTTTTCTCACGAACataagcaaaaaatgaaaatatatataaaacaa
GTACAACCTGATTAGATGATCGATAGCATATACATTTTCTattcaaataa
tttcaaataattttatacTACTTTAAATTGTGTTAGTCTTggtaaattat
tttgttattgttgcaGGGAGGGAAATAAAAATTGGATGCAGTACAGATCC
AAAGAGATGAACGATGAGAAGAAAAAGTAGATAACTAGATGGATAGATAG
CAGATAGATAAAAAGATAGATAGATATAATGATAACATTACATTAATAAG
GAGGTGGTTGATTTCCTTGCCATTTCAAGGTTTAAGTTAGAACTGGTTAG
AAgaattttttcctgtgtcatttcagttttattaaataaataaatgtgtT
TCGTATACAACAAAAGAGGCAgaaagtataaaaaataaatatgattttta
tttattggGTAAGAGCCAGACATTATTATATTTATGAGGAGTTTTCAATC
GCCTTGCCGTTTTAAGGTCAAACGAGTCCCCTCTTCACGTTTCTCAGCAA
ACGTAAGATTCGTATATAACAATGAAGCACACTCCATTATCCAGACAAAC
AAATTCCGGTGTTTGGGTAACCATACAACTGTCCCTTTGGAGGGAACCAG
TTCCTGGATCATCAACATAGCATTGGTGGAACATTATTTCCCAACATTTC
CTTGCTAAAAAGGAGCTTGTTTCTTGTTGacacaaatcttttgctttttg
tttacattttgtctcGATTTGCGTTGTGGATCCTGATACTTCTCTTGAAA
GTAATTGGAAGATAACCAGAATGGCGAGATGGTATGTCTTAAGATGGAAT
GACTTCATTTTTTAGggttatgatttatttatgttTGATTAGTATAACTA
AAAATTAAGAGTTGTATATatctaacaaacttgtcttgtgattcttgtgt
tttattttatatttgttcttttctttaacagattctgtttaaaagatttc
ttttgttttgaaaagaattcgaatgtctcaaatcaaataaggtcgtt Coding sequence (CDS) from alignment at sc0000253:9548..10694 >TCONS_00016896 ID=TCONS_00016896|Name=TCONS_00016896|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000253:9548..10694 (Clytia hemisphaerica)
TCAGCAAACGTAAGATTCGTATATAACAATGAAGCACACTCCATTATCCA
GACAAACAAATTCCGGTGTTTGGGTAACCATACAACTGTCCCTTTGGAGG
GAACCAGTTCCTGGATCATCAACATAGCATTGGTGGAACATTATTTCCCA
ACATTTCCTTGCTAAAAAGGAGCTTGTTTCTTGTTGacacaaatcttttg
ctttttgtttacattttgtctcGATTTGCGTTGTGGATCCTGATACTTCT
CTTGAAAGTAATTGGAAGATAACCAGAATGGCGAGATGGTATGTCTTAAG
ATGGAATGACTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016896-exon-sc0000253-1491911889:9548..10694 | TCONS_00016896-exon-sc0000253-1491911889:9548..10694 | Clytia hemisphaerica | exon |
| TCONS_00016896-exon-sc0000253-1510915933:9548..10694 | TCONS_00016896-exon-sc0000253-1510915933:9548..10694 | Clytia hemisphaerica | exon |
| TCONS_00016896-exon-sc0000253-1575043694:9548..10694 | TCONS_00016896-exon-sc0000253-1575043694:9548..10694 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:9548..10694 . |
Blast
The following BLAST results are available for this feature:
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