TCONS_00016894 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016894
Unique Name	TCONS_00016894
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2868

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000253:326399..332991-

transcript sequence

>TCONS_00016894 ID=TCONS_00016894|Name=TCONS_00016894|organism=Clytia hemisphaerica|type=transcript|length=2868bp
TATATATATCTGTcgtagaaaaataaacataaaaatctAACATTTCAAAA
TGGCACCACAAGCAATCATGCGTAAGGAAAGAATGGAGGATATTTATGAC
ATCAAAGAAGAACTTGGAAGGTAAGATAATCTTGCTCAGAACAAAGAACT
AAGATAATAACTTTTCATCTTTATGCTCTTACCATGTCTCATAGAAAGTT
TATGTATCTATCATGTATCTATCTGaaataatttggaaaaaaaaacaaca
aaaactcgaggacggtaaaagtgcgtAGTCCTTTGTCCTCACTCAAAGAA
TAAGAATAATTTCAGGCTGGAAGatcctaaaaataagaacagttgcGCCT
CATATAAGATTCACTGGATCTTTTAATAAATAAACGAATGTaaataaaaa
tatcataatTTTCTATCATCTCCATCTTGGAAATCTAGGGGTCATTTCGC
TGTGGTTAAGAAGTGCGTTTGCAAATCTTCTAACGACGACGTTGCTGGCA
AGTTtatcaaagtgaaaaaaacacGTGCTAGTCGGCAAGGAGCTGAACGA
GCCATTATTGAAAGAGAGGCTGAAATACTTCAAATGATAAATTGTGATAA
AGTGATGAAACTTTATGATGTTTTCGATCTTGGAAGTGAAATCGTTCTGG
TCATGGAGTTATTAACTGGTGGTGAACTATTCGATAAACTTTGTGAAGAA
GACTATTTGACAGAAGAACAAGCATGTGATTACACTAAACAAGTTGTTCA
AGGGATGGCCTATCTTCACTCAAAGAATATCATGCATCTCGATATAAAGc
ctgaaaacaTTGTTCTAAAGTCACCAGATTCGACGGAGATCAAGTTAGTG
GATTTCGGTTTGGCGCAATTATGGTCACCTGataaagaaattaaagaaat
gaTGGGAACAGCAGAATTTGTAGCTCCAGAAATTGTCAATTACGAAAAGA
TTGGACTTTGCACTGATATGTGGGCTGTTGGTGTATTGGCGTACATTCTG
TTGAGTGGAGAATCACCCTTCCTCGGTGACGACAATCAAGAGACGTTTCA
AAACATCGCAAAAGCTGAATATGAATTTgatgaagaaatttttgaagata
TCTCCGAAGATGCTATCGATTTTGTGAAAGGATTGCTCATCAAAAATCCA
GGAAAACGAACAACAGCTCAAGACTGCTTATCGCATGAATGGATAAAACC
TAAGACAAATAAATTCCAAATGGTTAGAGTCATCATCAAAACAACACGAT
TGAAAGCTTTCGTTGCAAGACGAAAGTGGCAGgaatctctgaagaaaatg
aaagcaatatcagcttttcaaagcGCGTTTAACAAGGATTGATCAATAAA
AAAACGAAATAAAGAAATAAACTTAAGGAAAAATGACACCGTGATAATGC
GAGTTGGTGTTTCTTGAATAAAGATGTGCAGAGACTTTTTGGATCAATGG
ATCGCTACTCATTTCCTTATTCTATGATACAAATCCACGAATGAGAAAAA
GGAGATTGAAAGGTGACTTCAAGTGACCGAATATTCGTCACTactcaaaa
ttgacaatttcatatAAAAAACGATGGATACAAGGAAAAAACGAATTCAG
AGAAATGTTCTGAAAATAATCTAAAGTTTGTGTATATCAAGATATTTGGG
TATTTGATCCCAAAACATGATCTTATATCACTTAGTTGTTAACtttgtta
agaaaatttatcattttattgttaacgacagatgaaaaagtttgaacATA
TACTTGGTTATGTCAGagatttttggacatttttcttcatttaatttcta
AGACATTGACAAAACTAATCATGTCATTGAAATATGTTGCTTTGCTGTCT
AAGCAAGCCCTCCCTAAGGTGCTTGAGTAGGACATATATTTTGTACGTTT
TGTCCCGTCAATCTTTGACAGAGCAGTTCCAAAGCCTAcagaaaataaaa
cttgaagGGATAATTTCTTGAACagattttgcttttaaataagagtgata
tcgtttgcttactcatcaattttaatttacaagctttctCACATTgtatt
gacacggatgtggagcaaaattggtcagaaagaggaaaagaaaaacattt
ttttgcttttatcagAATAATATAACcataggtagacactgtcctgatat
gaaatatgtgtctgatatgaaacgggaacaggaaaaataaaacctttaaa
atttgaaattttcgatGGCTTTGCTAGGAACCTACAAATTCGAGTGAGTT
TGTTCAATTTGAAAACTCTGAAGGACTTGAAATTACAGGTGGCACNAAAT
TCGAGTgagtttatttaatttgaaaactCTGAAGGCCTTGAAATTACAGG
CGGCATGAAATTAACGACGTTTAATATAATAATAGCATTGTTTGTGTGTG
TAAATAAAATACGAAATATTTTATACCTATCATTATGTTTTGTTATTTAT
ACTTTATCATAACAAAAAATAGTGAAATAAACTAAAGtaaataaatttat
gcaactGATATTCCCAATACATCTTCCCCGTAATTAGGCCTTCGCCTAAC
TGCcattttttggtgaaaaattgttggctaatttttgaaaaaagtgtcaa
aagTGGGAAGATGAGATGAAAGCGAATATTTTTGGGTATAAATAGGGTTA
TATTTCGTCAAAATGTATAATAAATTTTATATTCAAGAACAAACTTGTTT
TTCACCGACTTTTCGACAAAACTTATGAGAGGAGCCACCAGGAAGGGTAA
CAGTTTTACAGTAATATTCCGGCTTCATTTCACATTTGGCTTCTGGTTTC
AAGCCACCGACAACCAGTCGTTTTGGTTTCCTTTTCGCAACAATAGGTGC
GCCTTCAACCTGAAAAGA

Run BLAST on NCBI

transcript from alignment at sc0000253:326399..332991-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016894 ID=TCONS_00016894|Name=TCONS_00016894|organism=Clytia hemisphaerica|type=transcript|length=6593bp|location=Sequence derived from alignment at sc0000253:326399..332991- (Clytia hemisphaerica)
TATATATATCTGTCGTAGAAAAATAAACATAAAAATCTAACATTTCAAAA
TGGCACCACAAGCAATCATGCGTAAGGAAAGAATGGAGGATATTTATGAC
ATCAAAGAAGAACTTGGAAGGTAAGATAATCTTGCTCAGAACAAAGAACT
AAGATAATAACTTTTCATCTTTATGCTCTTACCATGTCTCATAGAAAGTT
TATGTATCTATCATGTATCTATCTGAAATAATTTGGAAAAAAAAACAACA
AAAACTCGAGGACGGTAAAAGTGCGTAGTCCTTTGTCCTCACTCAAAGAA
TAAGAATAATTTCAGGCTGGAAGATCCTAAAAATAAGAACAGTTGCGCCT
CATATAAGATTCACTGGATCTTTTAATAAATAAACGAATGTAAATAAAAA
TATCATAATTTTCTATCATCTCCATCTTGGAAATCTAGGGGTCATTTCGC
TGTGGTTAAGAAGTGCGTTTGCAAATCTTCTAACGACGACGTTGCTGGCA
AGTTTATCAAAGTGAAAAAAACACGTGCTAGTCGGCAAGGAGCTGAACGA
GCCATTATTGAAAGAGAGGCTGAAATACTTCAAATGATAAATTGTGATAA
AGTGATGAAACTTTATGATGTTTTCGATCTTGGAAGTGAAATCGTTCTGG
TCATGGAGTTGTAAGTAACTGTTAATGACAATGACAATGACTCTAACCCA
GTCCCAGACCCAGTCCCAGACCCAGTCCTATAGTTTGCCTTTTATGATTC
TGAAAATACATTGCGCTCACGAAAGGCCACGATTGTATCACCTCCATCAG
TAAAATCAAAAGGGGTTAAGTGTCTCTGGGTACGAGAAATTGTGTTTAAT
CTGGGAATACATGTATTTCATATTAGCAGATTCATATAAAAAAGTCACGA
AAAAACATCGAGTAAAGCTCTGATTGGTTGAGGCATGCAAAGATTACTTC
ATACTCTGGAAATTGTGAAAAAAAATATGCTTAAGGTGTGCAATATGCAG
CCAATCAGAACTTTACTCGACGTTCTTCGTGTTTATTTATGTGAATCCCA
TCTCATTAAAAGAACTTTTCAACTTCTAGATTAACTGGTGGTGAACTATT
CGATAAACTTTGTGAAGAAGACTATTTGACAGAAGAACAAGCATGTGATT
ACACTAAACAAGTTGTTCAAGGGATGGCCTATCTTCACTCAAAGAATATC
ATGCATCTCGATATAAAGGTAATAGAATTTTTTGATTTTGATTTGAATTC
CATTGTTTTCAAGTCAGAAAATTCAGTGGGGGTGAAAAAAAAGCACAATT
TCTTTGTAGTGAGAGTTTGTTTATTTGAGACAAAATGGAGAATGGTTTTC
CACTTGGGACGTAGACTGGAGTCGTTTATAATGCGTGTAATACTAATAAT
ACCAATACTAATGATAATAATAATAATAATAATACGGGATTTAGTTTGTA
TAAACGACTGGAAGAATCCGGTGTTCCAGCCTTATAGATACCCCGGCTAG
CTACGCAGAAACTTGCGTAGCGAGAAAACAATTTATCAAGCAATAACAAA
CTCTCAAAACAAAATCAACTCAAATGAAAAACTTTCAATACACAAATCCA
CATACATGTTTTTCTCAAGAATTATTTTGAGCGGGAAAAAATTATAACTG
CAAATATTGACACTTTTCTTTTGTTTGGAGTTAGTGCACAAAGGTTTCTA
GACGACTAAAATTGTTCCCTTTATTACTTTTTGCTTTATTTATACTATGT
ATGAATTAGTCGTCTAGCTTGCTAGACTACTTGGGACGATATTTTGGCCA
GTTCTTGCAGTGGGAGGGGCACCCACCGGGTCTATGAGAAGGGGGTGTGC
TAGAAAGTTAAAGTAATCAAATAGAATCACATCACAAAAGTTAGCTACAG
GATATTCGGCTTGAAGTTCAAACTTTCTTGTCTTGTTTTGACAAGGAATT
AGCAAACAGTTGCTATTCGTCTATGCCAATTAGAGTTGTCTGCATTCAAA
GGAGTTATAATTGACAAAGTAAACTCTACACTGTCGAAAGGATAAGGCAA
TTAGAGTATTAGTGTAAACGAAGAGAGGTATGAATGTGTTGAAATGAATA
AATATATTGACTGGTACGCTTAATGTTATGCAATATGAATAGCTTTGAAA
TGAATATGATAAAGCGATAATACAGTCGATTGCAAAAAAGACTAATCTTT
GCAATAAGAGGATATGAAATACAGTAATACTTTCGAACAAAATGCTCCAG
GTGTTAGGTACGGTTAAATGTGGTAGGCATGTTTTCGCAGTTCATACCCA
AGTTTAAATAAAAATTTTCCCAGAGTGAGTTTCGCAAAAATATTTTTTAC
GATTGATCCTCAAAAATGCGAAAAATAAATTCCGCAAAAATCACGAAAAG
ATTGCACCTTCATCACTGGAGATAATCAAAAGCAAAATGTCAGGGAGATC
AAAGGAAAATGGAGAGCAAAGGAAAAGCACCAGAAAATCCACAAAAAAGT
TTTTATTGAAATTGTTGCTTACGTATGGTCGTACTACCTCAACAACTCAT
AGACATAATAAGCTCCCACACCATCATTGGAGAAATTTTATTTTCATCTT
TTTAGCCTGAAAACATTGTTCTAAAGTCACCAGATTCGACGGAGATCAAG
TTAGTGGATTTCGGTTTGGCGCAATTATGGTCACCTGATAAAGAAATTAA
AGAAATGATGGGAACAGCAGAATTTGTAGCTCCAGAAATTGTCAATTACG
AAAAGATTGGACTTTGCACTGATATGTGGTAATTCAATCTTTTGTGCCTA
TTGCTTTCCGGTTTCAGTAGCCGGGTGATAGCCCGAATTGCTGTATTTGG
CATAAAGAATTTGTCAAAATGTGTCTTTTTTATGACACCTTACCGCCTTC
ATAATACGAATTAACATCTCTGGGCCTCACTGGAAAATTAAGCTTCATTG
TGATTTTGATAAAACAAAAAGCTCCACCGAAGCTGTGAAACAGGGGACAG
TGGTGTGAATATGGTTAAAATAATGTATTGTATTAACGCAAACCCCGCTT
AACGCAAAAAGATGTTGACACAAAATCGATATAACTTGGTACAGACACAG
AGCGTTTCTTATCTGTAGTATTGAAATTCATATGTCAGCATTAACTTTAA
ATCTTTTTCTCATGTTTTAGGGCTGTTGGTGTATTGGCGTACATTCTGTA
AGTCTTTCGATTGAAATATCTTTTTCAAACACACACTCTTTAGTGTCTAA
AAGTTAAGAAACATGAACTTAATTCTCAGGGAGAGGTTGAATATCTAAAT
GCCCCCAGAATGGATACATACTAGTCAAACAACGTCAAATCTCTTTCACG
TCACCAGACCATTGCAAAACTCGAACCCAACCCTTTGCATGCAACTCCTT
GTTAGGTTTCTTTAATAAAATCGAACCAACACTGAAAGAACAAAAACCAC
CGTGTACTAATAAGCAACATTTGGCGAGAATTAATTTTGGCAAATAACCA
AAAAATTCACGCCAGGAAGTAATTGTGTTGCACATTTAGCAAATTTTCGA
GGCAATTCACCAGATTCGCCAAAATTTCTTCCATTAAAGTGAGTCAATTT
CCCCTTTTACAGGTTGAGTGGAGAATCACCCTTCCTCGGTGACGACAATC
AAGAGACGTTTCAAAACATCGCAAAAGCTGAATATGAATTTGATGAAGAA
ATTTTTGAAGATATCTCCGAAGATGCTATCGATTTTGTGAAAGGATTGCT
CATCAAAAATCCAGGGTAAGTGTTTGAGTAAATTAATACTTGCCTCTCTA
AGAAGCTTCTTCGAATTATAGAGAACCTGTATTGACTTTCTCAAAACTGA
GAAATATATCAACCAATACACTACAAGGGAATTGGTTTACCAGGGCTAGT
ATGATGACGTCAAATGACTAAAATCGTTTTGACATACTGGCGGATACAGA
CAATTGCCCCTTTCATGAATTACGTCACGAACATCACTTGCCTCGTACTC
AAACAATTACCATGGTGATCATGTCCCTTGAGACATTAAATGATTTTTTA
ATGAATAGGAAGTAGTTTTAATAAAATCCGCTGGGAGTTAATCACCATGA
CAATAATTTCAAAACGAGGCAAGTGATGTTCGTAACGTAATTTATGAAAA
GGTCTATTGGCGTCATGAAGCACAAGTAAAACTTAACCCAATTCACTTTG
TGTGGTAAGTGTTGATAAGTGTACTGTTGACTGTAGTTTCTTGTGACTTT
TGAATTTCTAGAAAACGAACAACAGCTCAAGACTGCTTATCGCATGAATG
GATAAAACCTAAGGTAAAATGTGACGTCTGCTGTCAATTTTTCAATTCTT
CAACCAACAGTAGACCTTACCAGGCTCGTTTAGATTTCTAAAAATAATTT
CAACTATCATTTCACCCCAAATTACTTACAAGCCTATATTTTAACCGTAT
ATTTCCAAACTTCCCAACAACCTATACAACCCCCACCGCCTATAAAAGAC
ACGGTCATCGACGTTATTTTATTGTACTTCTGAAAAGTATCATGTAATAA
TCGAGTTTTGCTACAAGGTAAACATTTTTGACAATTTTCCATTATCTTAC
ATAGACAAATAAATTCCAAATGGTTAGAGTCATCATCAAAACAACACGAT
TGAAAGCTTTCGTTGCAAGACGAAAGTGGCAGGTAAAAGAAACTTTGATA
ATTCTAGAGAATTCTTTTGAACAAAGAAAATTTTATGGAAATTGCTTTAA
AAGTTGCCCTCAGAAAGTTTTATATCCAACCAATATTTCTTTTCTATTTT
CGGAAATCAGCTAACCCATACGAACCAGCTCTCAGAACTGAAAATTCCCT
CTTGAAACCCGTATATTTTCTGATCACCGTACAGTAAGAGAGAAACGACT
CCAGTATATTATTATAGTAACTCGTTGTGAGTTGTTGGCGGTTTTAAAAA
CAGGCCCTTAGGCGATACTTCCACCCAGAATCAAATTTTTCTTTTGTTTT
TTTTTAGGAATCTCTGAAGAAAATGAAAGCAATATCAGCTTTTCAAAGCG
CGTTTAACAAGGATTGATCAATAAAAAAACGAAATAAAGAAATAAACTTA
AGGAAAAATGACACCGTGATAATGCGAGTTGGTGTTTCTTGAATAAAGAT
GTGCAGAGACTTTTTGGATCAATGGATCGCTACTCATTTCCTTATTCTAT
GATACAAATCCACGAATGAGAAAAAGGAGATTGAAAGGTGACTTCAAGTG
ACCGAATATTCGTCACTACTCAAAATTGACAATTTCATATAAAAAACGAT
GGATACAAGGAAAAAACGAATTCAGAGAAATGTTCTGAAAATAATCTAAA
GTTTGTGTATATCAAGATATTTGGGTATTTGATCCCAAAACATGATCTTA
TATCACTTAGTTGTTAACTTTGTTAAGAAAATTTATCATTTTATTGTTAA
CGACAGATGAAAAAGTTTGAACATATACTTGGTTATGTCAGAGATTTTTG
GACATTTTTCTTCATTTAATTTCTAAGACATTGACAAAACTAATCATGTC
ATTGAAATATGTTGCTTTGCTGTCTAAGCAAGCCCTCCCTAAGGTGCTTG
AGTAGGACATATATTTTGTACGTTTTGTCCCGTCAATCTTTGACAGAGCA
GTTCCAAAGCCTACAGAAAATAAAACTTGAAGGGATAATTTCTTGAACAG
ATTTTGCTTTTAAATAAGAGTGATATCGTTTGCTTACTCATCAATTTTAA
TTTACAAGCTTTCTCACATTGTATTGACACGGATGTGGAGCAAAATTGGT
CAGAAAGAGGAAAAGAAAAACATTTTTTTGCTTTTATCAGAATAATATAA
CCATAGGTAGACACTGTCCTGATATGAAATATGTGTCTGATATGAAACGG
GAACAGGAAAAATAAAACCTTTAAAATTTGAAATTTTCGATGGCTTTGCT
AGGAACCTACAAATTCGAGTGAGTTTGTTCAATTTGAAAACTCTGAAGGA
CTTGAAATTACAGGTGGCACNAAATTCGAGTGAGTTTATTTAATTTGAAA
ACTCTGAAGGCCTTGAAATTACAGGCGGCATGAAATTAACGACGTTTAAT
ATAATAATAGCATTGTTTGTGTGTGTAAATAAAATACGAAATATTTTATA
CCTATCATTATGTTTTGTTATTTATACTTTATCATAACAAAAAATAGTGA
AATAAACTAAAGTAAATAAATTTATGCAACTGATATTCCCAATACATCTT
CCCCGTAATTAGGCCTTCGCCTAACTGCCATTTTTTGGTGAAAAATTGTT
GGCTAATTTTTGAAAAAAGTGTCAAAAGTGGGAAGATGAGATGAAAGCGA
ATATTTTTGGGTATAAATAGGGTTATATTTCGTCAAAATGTATAATAAAT
TTTATATTCAAGAACAAACTTGTTTTTCACCGACTTTTCGACAAAACTTA
TGAGAGGAGCCACCAGGAAGGGTAACAGTTTTACAGTAATATTCCGGCTT
CATTTCACATTTGGCTTCTGGTTTCAAGCCACCGACAACCAGTCGTTTTG
GTTTCCTTTTCGCAACAATAGGTGCGCCTTCAACCTGAAAAGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009456	XLOC_009456	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000253	supercontig	sc0000253:326399..332991 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.207894	0.19858	0.127119	0.11896	0	0	0	0.263369	0.0900552	0.306368	0	0	0.457537	0	0	0	0.710751	0.902379	0.394237	0.773183	3.48601	2.75528	0.373146	0.945925	0.832251	1.76691	1.41256	1.54686	0	0.11878

Blast

[Close]

BLAST of TCONS_00016894 vs. Swiss-Prot (Human)
Match: DAPK2 (Death-associated protein kinase 2 OS=Homo sapiens GN=DAPK2 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 2.059e-70
Identity = 140/288 (48.61%), Postives = 190/288 (65.97%), Query Frame = 2

Query:  440 GHFAVVKKCVCKSSNDDVAGKFIKVKKTRASRQGXXXXXXXXXXXXLQMINCDKVMKLYDVFDLGSEIVLVMELLTGGELFDKLCEEDYLTEEQACDYTKQVVQGMAYLHSKNIMHLDIKPENIVL--KSPDSTEIKLVDFGLAQLWSPDKEIKEMMGTAEFVAPEIVNYEKIGLCTDMWAVGVLAYILLSGESPFLGDDNQETFQNIAKAXXXXXXXXXXXXXXXXXXXVKGLLIKNPGKRTTAQDCLSHEWIKPKTNKFQMVR--VIIKTTRLKAFVARRKWQESL 1291
            G FA+VKKC  KS+  + A KFIK +++RASR+G  R  IERE  IL+ +    V+ L+DV++  +++VL++EL++GGELFD L +++ L+EE+A  + KQ++ G+ YLH+K I H D+KPENI+L  K+     IKL+DFGLA       E K + GT EFVAPEIVNYE +GL  DMW++GV+ YILLSG SPFLGD  QET  NI    Y+FDEE F   SE A DF++ LL+K   KR T Q+ L H WI P  N+  MVR   ++     +    RR+W+ S 
Sbjct:   32 GQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVDNQQAMVRRESVVNLENFRKQYVRRRWKLSF 319

The following BLAST results are available for this feature:

BLAST of TCONS_00016894 vs. Swiss-Prot (Human)

BLAST of TCONS_00016894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DAPK2	2.059e-70	48.61	Death-associated protein kinase 2 OS=Homo sapiens ...	[more]

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TCONS_00016894 (transcript) - C. hemisphaerica