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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016892 ID=TCONS_00016892|Name=TCONS_00016892|organism=Clytia hemisphaerica|type=transcript|length=320bp
GAGGATTTAGTACAGAGTGTACTACTGctgacaaaaataaattcacCTTC
GAGTACAATCAAGCGGTTGGAACATTACGTTATCTATGTTCTGGTCATTA
TATATGTCCGACTAGTGACATCGGCACGAGCACCAATCCAAATATTCGAT
TAGGAGGTCCGCAATGCTCCACAACTAGTATCAAAAGACGATTCCGTCGA
ACTCATTATGGTATCAGTTTCCACTATTATTGTATGTATATGTGGGGTGA
CAAAGCGACTAGTTCGAACCAAAACTTGGAGCTGGGAAGATGTACTAACC
GTAATCCAACTAAAATCAAA Run BLAST on NCBI protein sequence of TCONS_00016892-protein >TCONS_00016892-protein ID=TCONS_00016892-protein|Name=TCONS_00016892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
GFSTECTTADKNKFTFEYNQAVGTLRYLCSGHYICPTSDIGTSTNPNIRL
GGPQCSTTSIKRRFRRTHYGISFHYYCMYMWGDKATSSNQNLELGRCTNR
NPTKIK Run BLAST on NCBI transcript from alignment at sc0000253:262900..269333- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016892 ID=TCONS_00016892|Name=TCONS_00016892|organism=Clytia hemisphaerica|type=transcript|length=6434bp|location=Sequence derived from alignment at sc0000253:262900..269333- (Clytia hemisphaerica)
GAGGATTTAGTACAGAGTGTACTACTGCTGACAAAAATAAATTCACCTTC
GAGTACAATCAAGCGGTTGGAACATTACGTTATCTATGTTCTGGTCATTA
TATATGTCCGACTAGTGACATCGGCACGAGCAGTAAGTCCTTTTGCACCT
TGCAATGACGGATAAGAGAGATAAGAGAGTTAAACATTTATGGTTGAGAG
TGCTCCTTTTAGCCATACTCCTTACAACTACAATGAAAAAAAGAATATCC
GTCATAAGTTTTGAACCGCTCCTGTGCCAATACAGAAAACGTAAATATCT
CGTTATCTAGCCCTGATCTAGCATTGCTGCCGAACTAACCAGACTATTTT
CAAGAAAGACTTAAGGATTACCTATATCTTCCCGTTTTAAAATGTTAAGC
TTATTCTACGGAATAACTGGTGACCTCGTCGAAAGAAAAGACTGATTTTG
AAAAATTTCAGGTCATTTTAATTTTCCAAATCGGTGAGTGAGGTATCCTG
CTCGACATATAATATCAGGTTTTCAGTCCACACAGGGGAAAGGCTTCCTT
CCGAATAGGAACAGAAGAATTCAGGTTATTTGATAGTTAAAATCATCATT
AAAACTAAAAACAAGTTAAATTCGGAGTGTTAACGACTAACAAAGATTCG
AATTTAATAAAATTCATTTGTTTTTTAGCCAATCCAAATATTCGATTAGG
AGGTCCGCAATGCTCCACAACTAGTATCAAAAGACGATTCCGTCGAACTC
ATTGTAAGTTTTATCTTTTTATATCATTTTAACGAAGGGATCCTTACCCG
GGTGCACTCACCCTCGACTCCATGGCTTATCTAACCCCCTTACGCTATTG
ATGATTCTGATGGACGCGTTGACGGGGGATATAAGCCCTGGTGCACTTTA
AAAACGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTT
AAAAACGAAAGTACTTTTAGGCATGTACGCGAAACGTATGTCGATTAGCA
TAATCCCGCCATTTTACAAATTCCGAGAATTTGAAAAAATCAAAACAAGG
TATAAATAATGGCTGATGTAAATACTAAATTTAAAAGTCAAAGACAGATT
CTCAACATGAAGAAGTTGAAGTATCTTGGCAAACCAATCAATTGACAAAA
TTGCAAAATGTCATTTAAATGAAACTTGATTAGCAGAGAAAGATACTACG
AGACCTTGATAAGTAGTCTATCCCTGCACCGAGCGAACTGGAACTGCTTG
TAAAACGATTTTTTACAGAAAGACAAAAGGACTATGGAAAATAGTTTAAA
GATTCACTCGAAAAGACCCTCTGCTGTCCACATATAATTGTTTTGCTTGA
ACTGATTTCCAACAGCAATCTTACATGTTTCTTTATAATATGATCACTCA
TGATGAATGACTGACTGATGTTTATACATTTTGACATCTTTTCCATGACC
ATGGGCATAAGGAGTATGAAAAAGAAAAAAGCATATATCTCCAGTGATTG
CTTGACTGGTAGTCAAAATGAACTGATCGGTGAAGAAGCTTTTTCAGAAA
AAACTTGAGATTACGTACAATACAAACTCACTGCAAAAATGTTCTGGTTA
TGGTTTATACAATTAGAAGCTTGGCAATTATGTGGACAATTCTAATCAAC
TGATGAATGTGTAAAAGCAAGAAACTTCAAGTATTGAAAAAGAAATAAAT
TTTTACCATGAAACAATTCTTTAAACATATCCTACTGTATTACCAGACTG
AAAATTTATTTATAATGATCGTAAATGTCAAAAAGTATACAAATTAGTAT
ACCATTGTGAGATACACTATGAAATTCCGAACAATTGTTGATAACATATG
GGTGAAAAAAATCTACATTATTGCATGGTACAGTGTGTATATTGGACTAA
ATTTGACAAAAAATGTTGACGCTGGAAGAAGTTTTTTTATCAGGATAAAA
TTTATGCAAACATAATAATACAAATCTGTCATCTAGATTATCAATTATGA
CATGTTAGACTTTTTAAGATTTCAGTTGAATTTATTCTGACCGAAAGATT
ATGTTTCACTGTCGTCATCATGTTCTGATTTGCTAAATAACAAAATTTTT
GGAAAATTTTCCATAGAGTCTTCAGTTTTTCACCTATTTTGAGGATNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAATAAGTTCTCTC
CAAAGTAATTGTATTCCCCAAATTCTTATTTTTTCGCAATTTTTGCCTCT
TGCTGATTTCACCATTTTATCTCCAATTGTCCCTTTTTCGTAAATAATTG
TTTTTCAGTGAAGTCAAAGTAACAAAGATCAAGCATTTGCACTCTTAATT
GTTACACAGTCCATAAAGTGTCCATCAATCTTTTCTTTCTTATTATTTAA
ACCAGTTAAACATCATAACAGTGGCCAAATGTTTAAAATTAACTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTATAGCTCATGCTTATTCCAATCAGCCA
ATTAGTCACAAAAGCAAGATGCAATGATGATGTTGAGGACATGATACTTT
TCATGTTTTTACACACAATATGTTGTTGTACAAAAATCTGATTGAATTCA
TCCTACTGCTAGTGTCACTGTCGTTCATTGTTCCCAGCTGTGTTGACATG
ATATGGGTAGACAATTGGAGTTTACGTTCTTGAGGCTGGATATAAAAATT
ATATCGGCTACTTTTTGGATGAGCAGCATCAGCAGAGCAGAGTCAGCAGC
AAAGCATTAGAGCTGTTGAAAATGTTTTATTTATTTTTCACATAATCTAA
AAGTGAGAAAGAAAGCAATAATTTCAAGGTTAAATTTTCNTTGAATAAAT
TGCTTCCTCACCCTGCCTCACCATAATAAGGGCCCCTAATAAGTTCTTGT
CAGAATTAAAATTTCCAGTGATTTTCCTAAGGACGGCCCCACATAGTACG
TACGCACTAAGGGGGAGAGGGGGTGTCTTCTCAAAAGCATATGCTTGCGT
ACAGAGGGGAAGGGGAGGGAATAAAAATTAAGTACGCAGAAAAAAATTCA
CAGCCCTTTTTTTGCTTGTAGAATTTATTGAAAGAGAATAAAAAAAGAAT
TAATTATTATTCGCTTGTTCCTTACAAAATATCAGCTGTTTCTCTCTCAT
AGAAAAAGGGGAAAACCCAAGCCTTTTGAATTTGATTTTTTTNTAATTTA
TTTTGAGCCAGTAAAAAAACATTAAAAGACAGAGGAGAGTCATTCTCTAT
TCCAAACAACAAACACAGTCATTTTCTACTTGCATTTCCCTTCCAAATGT
CCAAATCAACATTATTTTCTTTTCCCATGGCAAATGGTCATACGGAGAAA
AACTATTTACAGCATTTTGATATAAATTATTTTAGTAAGTGTGCTCGCAG
CTCGGCTGTACTTGTCTTCGCAACATATTGCCCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAAAAATATCAAGATTCTTGATATTTTCTCTTCTAAA
GTACCAGGGCCCTAAACGATTCCTCCAATTATACGGTACTGGCCTCTTTA
AGTCGCAGAATCGTTTATCGGCCCTGGCTCGCGAGGGTGGGGTGCACTCG
ACTCAAAAACGACTGTACGTATGACTTAAATTTACGCCTTTAAAATCAAA
CCAAATCGACCTTTATGCTGCCTTTTCTTAAAGATTTTTGACCATTTAAA
GGCGAAATAGGGTCAAATTTTCCAAAGTTTACACCCTTAGAGTGCAATTT
TTCTCATCATTTTGCATTCCAACCCTTACAGTGAACTTTGGGAAGCTTAG
GCAAAGGGCAGCACGTACGTTTCTTGGTCGTTTACCTTGAGTGCTTAACT
AAGGTGGTATACTAAGTTCCTTGGGTATACTGAAAAAAGTTTAACGGGCT
CTAACACAAAATGAGGAAGCTTTTCCAGGTTTTGCAAGAGAATTCAGTTG
ACAAAGCCGTCTAGTCTATATTCTTTTTTAAGGTTGGTAATTTTTCTTAT
TTTGTAAGAGGATGAAGTCGAATGTCTGCCAGTAACATTATGATTTTCAT
TTGTTTGTTTGTTTTTCGTAGATGGTATCAGTTTCCACTATTATTGTATG
TATATGTGGGGTGACAAAGCGACTAGTTCGAACCAAAACTTGGAGCTGGG
AAGATGTACTAACCGTAATCCAACTAAAATCAAA Coding sequence (CDS) from alignment at sc0000253:262900..269333- >TCONS_00016892 ID=TCONS_00016892|Name=TCONS_00016892|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000253:262900..269333- (Clytia hemisphaerica)
ATGGTATCAGTTTCCACTATTATTGTATGTATATGTGGGGTGACAAAGCG
ACTAGTTCGAACCAAAACTTGGAGCTGGGAAGATGTACTAACCGTAATCC
AACTAAAATCAAACCAATCCAAATATTCGATTAGGAGGTCCGCAATGCTC
CACAACTAGTATCAAAAGACGATTCCGTCGAACTCATTGGATTTAGTACA
GAGTGTACTACTGCTGACAAAAATAAATTCACCTTCGAGTACAATCAAGC
GGTTGGAACATTACGTTATCTATGTTCTGGTCATTATATATGTCCGACTA
GTGACATCGGCACGAGCAATGGTATCAGTTTCCACTATTATTGTATGTAT
ATGTGGGGTGACAAAGCGACTAGTTCGAACCAAAACTTGGAGCTGGGAAG
ATGTACTAACCGTAATCCAACTAAAATCAAACCAATCCAAATATTCGATT
AGGAGGTCCGCAATGCTCCACAACTAGTATCAAAAGACGATTCCGTCGAA
CTCATTGGATTTAGTACAGAGTGTACTACTGCTGACAAAAATAAATTCAC
CTTCGAGTACAATCAAGCGGTTGGAACATTACGTTATCTATGTTCTGGTC
ATTATATATGTCCGACTAGTGACATCGGCACGAGCAATGGTATCAGTTTC
CACTATTATTGTATGTATATGTGGGGTGACAAAGCGACTAGTTCGAACCA
AAACTTGGAGCTGGGAAGATGTACTAACCGTAATCCAACTAAAATCAAAC
CAATCCAAATATTCGATTAGGAGGTCCGCAATGCTCCACAACTAGTATCA
AAAGACGATTCCGTCGAACTCATTGGATTTAGTACAGAGTGTACTACTGC
TGACAAAAATAAATTCACCTTCGAGTACAATCAAGCGGTTGGAACATTAC
GTTATCTATGTTCTGGTCATTATATATGTCCGACTAGTGACATCGGCACG
AGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00016892-exon-sc0000253-1575043694:269202..269333 | TCONS_00016892-exon-sc0000253-1575043694:269202..269333 | Clytia hemisphaerica | exon |
| TCONS_00016892-exon-sc0000253-1575043694:268581..268655 | TCONS_00016892-exon-sc0000253-1575043694:268581..268655 | Clytia hemisphaerica | exon |
| TCONS_00016892-exon-sc0000253-1575043694:262900..263012 | TCONS_00016892-exon-sc0000253-1575043694:262900..263012 | Clytia hemisphaerica | exon |
| TCONS_00016892-exon-sc0000253-1510915933:269202..269333 | TCONS_00016892-exon-sc0000253-1510915933:269202..269333 | Clytia hemisphaerica | exon |
| TCONS_00016892-exon-sc0000253-1510915933:268581..268655 | TCONS_00016892-exon-sc0000253-1510915933:268581..268655 | Clytia hemisphaerica | exon |
| TCONS_00016892-exon-sc0000253-1510915933:262900..263012 | TCONS_00016892-exon-sc0000253-1510915933:262900..263012 | Clytia hemisphaerica | exon |
| TCONS_00016892-exon-sc0000253-1491911889:269202..269333 | TCONS_00016892-exon-sc0000253-1491911889:269202..269333 | Clytia hemisphaerica | exon |
| TCONS_00016892-exon-sc0000253-1491911889:268581..268655 | TCONS_00016892-exon-sc0000253-1491911889:268581..268655 | Clytia hemisphaerica | exon |
| TCONS_00016892-exon-sc0000253-1491911889:262900..263012 | TCONS_00016892-exon-sc0000253-1491911889:262900..263012 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:262900..269333 - |
Blast
The following BLAST results are available for this feature:
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