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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016888 ID=TCONS_00016888|Name=TCONS_00016888|organism=Clytia hemisphaerica|type=transcript|length=1531bp
GGAAGAACCTAgtcgaattttttcttcctgtttgggaagattcttcctct
ttgggaagatgaaaaatgactgaatcttcggcgaaagtgtacgatgaccg
gcgaaagttgaaactttttggagctgataaagcatcaaattttaagattt
ttcaccgaaagaaaaataaactttaccgTGGAAATTTGGTTTAATTTTGA
GAAAACTGCGTTAACTTCCCAAACAGGAAGTTTCAACCTGATCGAAAAGT
CCTCTGTAAGTGAAAAAGCGGGAAGATCTTCCCGTTCGGGAGTCaagtta
atttcccgttcgggaaggttcttcccatttcggaagaatcttcccatttc
ggaagaatcttcccgatcgagttagtggcacagactgatATAGGCTTACA
GTACCTCTCTGTCATTGTGGATTCTTTCTGGGCATCCCTGGGGACTCTAT
AAACGCACTCTTATGCTCTGATTGCAAGAatagtattttctttttttgac
gtcagaaaaGAAAGGGTTTGATTATTCGTTTATGAAAACTGTACTTTTTC
TCCAAACTGTCATATTTCAACATATATCTGAACTTCAAATCTCACATGCA
GGCTCCAAATCTACTAGGGTATGagtgttgaaaatttcatggcGATAAGG
TAGACAGAAAAAAAGTTACGTCAAAAATTCTAGGGGTACGGTTTTTTTAA
TCACCCTGTAGCTAATGAATTAGTGATAACTTGTCTGTGACGACAGCCTG
GGACCGcaaatatttagaaaattatTCTATATTTGGCTACAAAAGCATTC
GAAAATTGTTTTCATAAGCCAAAAGAACGTTCGCTATCTTCTTCGAAtgt
ttttcaaccgaccaaaaCCCAAGCTGACGTCAGCGTGAGTTTCAGTTCCA
GGGAAGTGCCACCAAATCCCAGGTCCCCTACTTATTGgcatattatttct
ttaaaatgtcactttttagtttttgaaaattttgacaatATGTCGTAAAT
ATACTTACCATTCCCGAAATATCACGAAAATACCAAATGGTATAATTACC
AAAAGGAATTTTGGCCTTCGACTCCAATGGTAATTATACTTATACCAATT
AAAACTCGTTTGTATAGCTATAAAATACTGCGTGGTTATTCATAATTTAA
CTTAGAAAAATAATGACCTATTTTTAATTTACGGGCCCTGAGATATGACC
AAAATCTTTATCGCCTAAATTTTGCGTGGATTATTTCTAAGAAGCCGTGG
TAGCTAAAGGGTTAAAATGAATGCAATACATGCGATGccttcttttgacg
tcaatgccatgacttctttcaatctaattcaaacaaagatttgagcTGCC
GACTTTCCGTCGATCCTCTCTCACATCGAACAGAGGCAAGATAGAAAGTA
GCCTGTATCAGACGTACATGGCCTTTTCTCTACACCGTTCCGACGGTAAC
TTTTTACCTTTTGTCCCACCTAAAATCGCGTTGGaagattgacgtcactt
ttcttTTTGAAGTCCTTGTGGTACTGTTTCA Run BLAST on NCBI transcript from alignment at sc0000253:222232..223909- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016888 ID=TCONS_00016888|Name=TCONS_00016888|organism=Clytia hemisphaerica|type=transcript|length=1678bp|location=Sequence derived from alignment at sc0000253:222232..223909- (Clytia hemisphaerica)
GGAAGAACCTAGTCGAATTTTTTCTTCCTGTTTGGGAAGATTCTTCCTCT
TTGGGAAGATGAAAAATGACTGAATCTTCGGCGAAAGTGTACGATGACCG
GCGAAAGTTGAAACTTTTTGGAGCTGATAAAGCATCAAATTTTAAGATTT
TTCACCGAAAGAAAAATAAACTTTACCGTGGAAATTTGGTTTAATTTTGA
GAAAACTGCGTTAACTTCCCAAACAGGAAGTTTCAACCTGATCGAAAAGT
CCTCTGTAAGTGAAAAAGCGGGAAGATCTTCCCGTTCGGGAGTCAAGTTA
ATTTCCCGTTCGGGAAGGTTCTTCCCATTTCGGAAGAATCTTCCCATTTC
GGAAGAATCTTCCCGATCGAGTTAGTGGCACAGACTGATATAGGCTTACA
GTACCTCTCTGTCATTGTGGATTCTTTCTGGGCATCCCTGGGGACTCTAT
AAACGCACTCTTATGCTCTGATTGCAAGAATAGTATTTTCTTTTTTTGAC
GTCAGAAAAGAAAGGGTTTGATTATTCGTTTATGAAAACTGTACTTTTTC
TCCAAACTGTCATATTTCAACATATATCTGAACTTCAAATCTCACATGCA
GGCTCCAAATCTACTAGGGTATGAGTGTTGAAAATTTCATGGCGATAAGG
TAGACAGAAAAAAAGTTACGTCAAAAATTCTAGGGGTACGGTTTTTTTAA
TCACCCTGTAGCTAATGAATTAGTGATAACTTGTCTGTGACGACAGCCTG
GGACCGCAAATATTTAGAAAATTATTCTATATTTGGCTACAAAAGCATTC
GAAAATTGTTTTCATAAGCCAAAAGAACGTTCGCTATCTTCTTCGAATGT
TTTTCAACCGACCAAAACCCAAGCTGACGTCAGCGTGAGTTTCAGTTCCA
GGGAAGTGCCACCAAATCCCAGGTCCCCTACTTATTGGCATATTATTTCT
TTAAAATGTCACTTTTTAGTTTTTGAAAATTTTGACAATATGTCGTAAAT
ATACTTACCATTCCCGAAATATCACGAAAATACCAAATGGTATAATTACC
AAAAGGAATTTTGGCCTTCGACTCCAATGGTAATTATACTTATACCAATT
AAAACTCGTTTGTATAGCTATAAAATACTGCGTGGTTATTCATAATTTAA
CTTAGAAAAATAATGACCTATTTTTAATTTACGGGCCCTGAGATATGACC
AAAATCTTTATCGCCTAAATTTTGCGTGGATTATTTCTAAGAAGCCGTGG
TAGCTAAAGGGTTAAAATGAATGCAATACATGCGATGCCTTCTTTTGACG
TCAATGCCATGACTTCTTTCAATCTAATTCAAACAAAGATTTGAGCTGCC
GACTTTCCGTCGATCCTCTCTCACATCGAACAGAGGATAAAAAGTAGCCT
GTATCAGACGTACATGGCCTTTTCTCTACACCGTTCCGACGGTAACTTTT
TACCTTTCGTCCCACCTAAAATCGCGTGGGAAGATTGACGTCACTTTTCT
TTTTGAAGTCCTTGTGNTCACATCGAACAGAGGCAAGATAGAAAGTAGCC
TGTATCAGACGTACATGGCCTTTTCTCTACACCGTTCCGACGGTAACTTT
TTACCTTTTGTCCCACCTAAAATCGCGTTGGAAGATTGACGTCACTTTTC
TTTTTGAAGTCCTTGTGGTACTGTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016888-exon-sc0000253-1575043694:222536..223909 | TCONS_00016888-exon-sc0000253-1575043694:222536..223909 | Clytia hemisphaerica | exon |
| TCONS_00016888-exon-sc0000253-1575043694:222232..222388 | TCONS_00016888-exon-sc0000253-1575043694:222232..222388 | Clytia hemisphaerica | exon |
| TCONS_00016888-exon-sc0000253-1510915933:222536..223909 | TCONS_00016888-exon-sc0000253-1510915933:222536..223909 | Clytia hemisphaerica | exon |
| TCONS_00016888-exon-sc0000253-1510915933:222232..222388 | TCONS_00016888-exon-sc0000253-1510915933:222232..222388 | Clytia hemisphaerica | exon |
| TCONS_00016888-exon-sc0000253-1491911889:222536..223909 | TCONS_00016888-exon-sc0000253-1491911889:222536..223909 | Clytia hemisphaerica | exon |
| TCONS_00016888-exon-sc0000253-1491911889:222232..222388 | TCONS_00016888-exon-sc0000253-1491911889:222232..222388 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:222232..223909 - |
Blast
The following BLAST results are available for this feature:
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