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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016883 ID=TCONS_00016883|Name=TCONS_00016883|organism=Clytia hemisphaerica|type=transcript|length=2905bpRun BLAST on NCBI protein sequence of TCONS_00016883-protein >TCONS_00016883-protein ID=TCONS_00016883-protein|Name=TCONS_00016883-protein|organism=Clytia hemisphaerica|type=polypeptide|length=748bp MYYLTWTLLFTIWTLNLSTNGYKISTIDKEMVEDLRKDESAFDTIARNNMRun BLAST on NCBI transcript from alignment at sc0000253:197125..214516- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016883 ID=TCONS_00016883|Name=TCONS_00016883|organism=Clytia hemisphaerica|type=transcript|length=17392bp|location=Sequence derived from alignment at sc0000253:197125..214516- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000253:197125..214516- >TCONS_00016883 ID=TCONS_00016883|Name=TCONS_00016883|organism=Clytia hemisphaerica|type=CDS|length=33705bp|location=Sequence derived from alignment at sc0000253:197125..214516- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016883 vs. Swiss-Prot (Human)
Match: ASTL (Astacin-like metalloendopeptidase OS=Homo sapiens GN=ASTL PE=1 SV=4) HSP 1 Score: 134.806 bits (338), Expect = 2.950e-33 Identity = 87/252 (34.52%), Postives = 130/252 (51.59%), Query Frame = 3
Query: 510 TPEENLDKTTQKKNTHLFESDIILEDIPENEG---GEVGKQSYKRALRRSQHYLWIDRV----IPYEITP-FTEAGRANIEKAMKGLQDQSCLTFREKQDGDKNWIKFDDFGSCSSSVGRSFWRDGPQTISLSENCWN-SMGTIQHEILHALGFWHEQSRNDRDKYVEILWENISPGKENNFEKYDRQSSKNMNSVYDPSSLMHYGKYSFSENGKPTIQLINDPNHSIGQRVGPSAEDLVQLNALYHCQDVG 1238
TPE + + K+ +ILE+ PE+ G++ + S R L + + + +P+ ++ + E R I +A+ + +C+ F QD +++I C SSVGRS G Q +SL+ C G + HE++H LGFWHE +R DRD+Y+ + W I PG E NF K S NM + YD SS+MHYG+ +FS G PTI + P+ IGQR SA D+ ++ LY C G
Sbjct: 43 TPEGT--QASGDKDIPAINQGLILEETPESSFLIEGDIIRPSPFRLLSATSNKWPMGGSGVVEVPFLLSSKYDEPSRQVILEALAEFERSTCIRFVTYQD-QRDFISIIPMYGCFSSVGRS---GGMQVVSLAPTCLQKGRGIVLHELMHVLGFWHEHTRADRDRYIRVNWNEILPGFEINFIK---SQSSNMLTPYDYSSVMHYGRLAFSRRGLPTITPLWAPSVHIGQRWNLSASDITRVLKLYGCSPSG 285 The following BLAST results are available for this feature:
BLAST of TCONS_00016883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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