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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016882 ID=TCONS_00016882|Name=TCONS_00016882|organism=Clytia hemisphaerica|type=transcript|length=1897bp
tagGTATGGAATATTCGGTGACATTTCTAACACTCTGGCTGTACATCAAA
GAAATGATCAACACAGATCAACCAAAGCTATTCTACAGTCTAGTAGCTTC
CTCGTACCTGATTGCAGCTGTTATCTTATCAGTCTTCATTGGACGGTGGG
TCGACCGCACGCGTAAAGTACGTCAAATCTTCCTAATCTGCAACACCTTA
GTTATCATCGGTAACATAATGTATGCTTTCCATTTCTCGCCTTGGTTCTT
GGTTTTCGGCCGATTGGTGTCTGGTGCTGATGGGCCACTCAGGTCGGTGA
TTTCTGGAGAAATTGCAAGATGTTATCCAGATTCAGAAGTCCTCAGTAAA
TTCTCTTCGATGGGAATGGCATTTGCACTTGGTTTCATTGTTGGACCTGG
AGTTAATTTCATGTTTACGACGGTCGATTTCAACATTGGTGCTTGGCACG
TGACTTATGTGAACATTCCTGGTGTTTATATGGCACTGTTTTTCTTTATC
ACTCAGATATGTGTTTTCTTCATGGTTCATGATCTCTCACGTGAGTACGA
CCTCAAAGCTGACGCCATCCTTAAACCAATTTTACCAGGAGATATCAAAC
CACTACCAGTTACAACAAGCTTTTTTTATGCTAAATCCAACGCTAATACC
CAATCACAATCAGATCGGTTCACAAAATCAGTTCAGATTCCAGTCAAACC
AAAAGAAACAACCATCAACTTTTACGATGACACTTTGATTGAAACATCAC
ATGACAATCAACAAGAACGACGTAACAAATTCAAAATGCAACGACTCGAA
ATGTCTGGTATGTTTATAAGACCCTTTGCATTCCCAAAGTTAGCATCCAA
TCAAGTTGTTCCAGTAATCACTGAAGATTCATCCCTAACATCCAGCTCCT
CATCAAACTACAGCTCTACCTCCTCCTCATCATCGACATCCAGTGCTGAA
CAATCCAAAGCTGACCATATCCTCTGTACCATCCTAACCAATGCAGATTC
CCTCTTAATCCTCGCGCTCACCTTCATTCTCTGGTACTGGATGGTTGCAT
TTGATATGTGGTTGCCAATTATGGTGGTCGATGTTATGGAGATGAGCATT
ACAGAACTCAATGGCATTGTCTTCGGTTTCGGTTGCATCTCAGCTGTTAT
TCTTGGTATAATGTCTTTAAAATCATTCTCTGATCGAATGTTGTACAATC
TCTCAATCATATGTATGATCTCTTTAGCTATAATGGAGCTCATCTTCATC
TACATGCGATTCCAACATTCCCAAATGTATGTCAATATTGTCTTATGGAT
CATTTGGGGCACCTTATTTGCCATTGTGGTTATTATGGATGAAGTATTCC
TGGTTGGTGTTATGGCAAAGATGACCAGCTCTAAAGTACAAACATTCTCT
GAGAGCCTTCGACTCTCAATGTCACGCTTCGGAGCTTTATTAgctttgct
gacatcagcagcTTTGTTTGAATGGATTGAATATGTATGTGGGGTTGGAG
TTATTGTATCGTTACTGACTTTAGTAATTTTGATTAAACGGAGAAAATCA
TTGAGAGCTCCCGTGATTTGTATTAAGTAAATTTTATAATAGTTATAACT
TTTTTGCACTATTTTAATTGTATAAATTGTATATAGATCAAGATAGCATA
TCTGCAATGTACATTTTTTTCTagataataatattttttataagaaactc
aTTGAAAATGATACTCCTTAGTGGAATAGAAAAAAGTGGCAATAACAAAT
GGCACAATATAGAAAAATTATAACATGTGAAATTTTATAATTATAAGCAA
ATgcctagaaaaagaaaaaaatcaaatgaaaccTATAGCTTCTGTCATTT
GAATGTCCATTGATTGGTCAGGCACCTTCTTTTGAGCTCTGCAAAGC Run BLAST on NCBI transcript from alignment at sc0000253:188638..190768- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016882 ID=TCONS_00016882|Name=TCONS_00016882|organism=Clytia hemisphaerica|type=transcript|length=2131bp|location=Sequence derived from alignment at sc0000253:188638..190768- (Clytia hemisphaerica)
TAGGTATGGAATATTCGGTGACATTTCTAACACTCTGGCTGTACATCAAA
GAAATGATCAACACAGATCAACCAAAGCTATTCTACAGTCTAGTAGCTTC
CTCGTACCTGATTGCAGCTGTTATCTTATCAGTCTTCATTGGACGGTGGG
TCGACCGCACGCGTAAAGTACGTCAAATCTTCCTAATCTGCAACACCTTA
GTTATCATCGGTAACATAATGTATGCTTTCCATTTCTCGCCTTGGTTCTT
GGTTTTCGGCCGATTGGTGTCTGGTGCTGATGGGCCACTCAGGTCGGTGA
TTTCTGGAGAAATTGCAAGATGTTATCCAGATTCAGAAGTCCTCAGTAAA
TTCTCTTCGATGGGAATGGCATTTGCACTTGGTTTCATTGTTGGACCTGG
AGTTAATTTCATGTTTACGACGGTCGATTTCAACATTGGTGCTTGGCACG
TGACTTATGTGAACATTCCTGGTGTTTATATGGCACTGTTTTTCTTTATC
ACTCAGGTAATTGTCATATTATAAAAAAGAATTCATCTACCTTACCAATA
CCTTGGTATTGCAAATCTTTCTATCAACTATAAAAAAGCGAAAAATGAAG
AAATAACCATTTTTTCCCAAAAATACTTTGTTCGAAATTGGACTCGTATT
AGGATTTTAGTCTTAAAGTCTACTTTAATGTACTATAGATCCTGAATTAA
AGTAGTTTTTATTTAATGATCACTGACTGTCTTTTTACAGATATGTGTTT
TCTTCATGGTTCATGATCTCTCACGTGAGTACGACCTCAAAGCTGACGCC
ATCCTTAAACCAATTTTACCAGGAGATATCAAACCACTACCAGTTACAAC
AAGCTTTTTTTATGCTAAATCCAACGCTAATACCCAATCACAATCAGATC
GGTTCACAAAATCAGTTCAGATTCCAGTCAAACCAAAAGAAACAACCATC
AACTTTTACGATGACACTTTGATTGAAACATCACATGACAATCAACAAGA
ACGACGTAACAAATTCAAAATGCAACGACTCGAAATGTCTGGTATGTTTA
TAAGACCCTTTGCATTCCCAAAGTTAGCATCCAATCAAGTTGTTCCAGTA
ATCACTGAAGATTCATCCCTAACATCCAGCTCCTCATCAAACTACAGCTC
TACCTCCTCCTCATCATCGACATCCAGTGCTGAACAATCCAAAGCTGACC
ATATCCTCTGTACCATCCTAACCAATGCAGATTCCCTCTTAATCCTCGCG
CTCACCTTCATTCTCTGGTACTGGATGGTTGCATTTGATATGTGGTTGCC
AATTATGGTGGTCGATGTTATGGAGATGAGCATTACAGAACTCAATGGCA
TTGTCTTCGGTTTCGGTTGCATCTCAGCTGTTATTCTTGGTATAATGTCT
TTAAAATCATTCTCTGATCGAATGTTGTACAATCTCTCAATCATATGTAT
GATCTCTTTAGCTATAATGGAGCTCATCTTCATCTACATGCGATTCCAAC
ATTCCCAAATGTATGTCAATATTGTCTTATGGATCATTTGGGGCACCTTA
TTTGCCATTGTGGTTATTATGGATGAAGTATTCCTGGTTGGTGTTATGGC
AAAGATGACCAGCTCTAAAGTACAAACATTCTCTGAGAGCCTTCGACTCT
CAATGTCACGCTTCGGAGCTTTATTAGCTTTGCTGACATCAGCAGCTTTG
TTTGAATGGATTGAATATGTATGTGGGGTTGGAGTTATTGTATCGTTACT
GACTTTAGTAATTTTGATTAAACGGAGAAAATCATTGAGAGCTCCCGTGA
TTTGTATTAAGTAAATTTTATAATAGTTATAACTTTTTTGCACTATTTTA
ATTGTATAAATTGTATATAGATCAAGATAGCATATCTGCAATGTACATTT
TTTTCTAGATAATAATATTTTTTATAAGAAACTCATTGAAAATGATACTC
CTTAGTGGAATAGAAAAAAGTGGCAATAACAAATGGCACAATATAGAAAA
ATTATAACATGTGAAATTTTATAATTATAAGCAAATGCCTAGAAAAAGAA
AAAAATCAAATGAAACCTATAGCTTCTGTCATTTGAATGTCCATTGATTG
GTCAGGCACCTTCTTTTGAGCTCTGCAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016882-exon-sc0000253-1575043694:190263..190768 | TCONS_00016882-exon-sc0000253-1575043694:190263..190768 | Clytia hemisphaerica | exon |
| TCONS_00016882-exon-sc0000253-1575043694:188638..190028 | TCONS_00016882-exon-sc0000253-1575043694:188638..190028 | Clytia hemisphaerica | exon |
| TCONS_00016882-exon-sc0000253-1510915933:190263..190768 | TCONS_00016882-exon-sc0000253-1510915933:190263..190768 | Clytia hemisphaerica | exon |
| TCONS_00016882-exon-sc0000253-1510915933:188638..190028 | TCONS_00016882-exon-sc0000253-1510915933:188638..190028 | Clytia hemisphaerica | exon |
| TCONS_00016882-exon-sc0000253-1491911889:190263..190768 | TCONS_00016882-exon-sc0000253-1491911889:190263..190768 | Clytia hemisphaerica | exon |
| TCONS_00016882-exon-sc0000253-1491911889:188638..190028 | TCONS_00016882-exon-sc0000253-1491911889:188638..190028 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:188638..190768 - |
Blast
The following BLAST results are available for this feature:
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