TCONS_00016877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016877
Unique NameTCONS_00016877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016877 ID=TCONS_00016877|Name=TCONS_00016877|organism=Clytia hemisphaerica|type=transcript|length=2633bp
GTTCGCGTGTTCTTATCACTAAAGGTAAAAAACAAAGTAGAAACCAACCA
AAAAGATAATGTTGGCACAACAGGTGACATGGCTGATGAAGCTTTTAACA
GTAATGGTTGTGGTCTTCAACAGTATGAAGGATGTGGATGGGAATATGTC
TTGCCATTCAGGAGTGGTACCCGGTCATAGTTGGCCAAAACCTGACATCA
AACAATGCGCATCAAACGAAACTAAATGTTACATGCAGCGagtattttat
tcatttgagATCCGTGGATGTTTGGCACCTGACCGATACGATTCTTGCAA
CCAAAGAAGCGGCCCTAGAAACATAACTGCTGGCTTAATATGTTGCTGTG
ACACGCCCAATTGCAATACGTACCAATTTCGAATGGACTGTTATAAGCAG
TTTAACGAGACTAACCCATGGCCGTCGGCTGCACCCACACAACCACCGAA
AACCACTCCCAGCTCAAGTATCTTATTAACTGTATCATGTGCTCAAACTC
TCGGAACAGTTACGTTAATTAAGATTATCAGTAGCTTCGTTTAGAAGAAA
AGGTTGGTAGCTGACCAGATTCGAAGATATTGAAATATCATAACTTTTGT
CGTGTTGGAAACACCTTTggaaagtttattttcttaGCAAATAAGTTTAC
ACTCAAAGCAAAATTGACTGTATTTTGTAACTTAGGTTAATAGATTGTAT
AATTTATCAAATACGATTTGTAAATATCACAGCTAGACAAAATCCAAATA
TAGCCAACTGCAGTGGAAGCTCAGCCAGTTAGACCAGAAGGTTTTACATT
AAAGGGGAGGGATTGAACGAGACTTAAAGAAATCGACAAAAAATACTTCA
CTCATATCAACTTCGAAGACGAGGGAGGGGCCCTCAAGGTAAGTGACCTA
ACGTAGGCGCGGACTTTAAGGGTGCGTTTTTCAGAATTCCCAAATAGTAC
TAAGTAATAAGGACcaattttatgaaagaaaaagatTCTCTAAGGAGTGT
TAAAGGTGAGAAAAACGAAGTTTTGAAGGAAAGATTTAGGATGATCTGat
cattttttgctttaaaaggagcaaaagtttttggctaatttttttcTGCT
GTACTGCAAGGGTCCAACTTTAAAGACCTAATTTTTGGCAGCAAGTACGG
TGGCTGGAAAAATGAACCCTAAGTGGATGAAGTTTTgctaaaatttgcga
aaaaaagtgactctgaatgggactgaaattccaaaactttttaTCCAAAC
TTCCTCAAAAGGAATACCCTAAAAGGgactaatttttctattttgttgtt
tttgtgacCCTAACTGGGAGTCATGGGGTGAAAAAAGTTACCCTGACCAG
CAACACATCCCCGTAACCCTTTTTGCCCAggtttgccccccccccccccg
gacaatgCATCCATCCTTTCTACATATGGCAAATTCTGAAATAGCTTCTC
CTTTTCTCTTGTCTCAGTTATACCACTTAGgattttttcgaatgttttaa
acCCAGGATCTAGGCCCGGGGGAGGCAAACTTAGggaaaattgggtacgg
ggacgtaCCGCTGGTCAGAgttccttttttaggctctcTGAAGAAgaaat
ttacatattttgaggttttactcAGAACAGTAGAAGGTTACTACAGGCCA
AATGTCttaaaccatctgattatcccatTAACTGTCAATAAATAAATCAT
AGGAGTATGGATTTTGTGTTTGTGACATAATAAGTATCTTTGGATCTGCA
TTTCTCTCTGCTACATTATTTATGGGTTTGGAAAATATAAATACAAGATA
CTTCTTTTAGTATAATACAACTGGAAAACTTTGTAACTGATTAATGAAGA
CGGATGAAGACACTTCAAGCAAATTTCAAGAGAGCTCGATTTAATTTATA
ATTAAATTATAATTAAATAATTTGATTAATACCAATAAAATTCTTTTATA
AATTGTTCCAAAACCTTTTCCTATTGTTTCGGCTTTCTAGCTTCTTAAAT
TTGCTCAGTTTTTCAACCAATacagtttgatttttttaccaACAAACCAA
TTCTTATATAATACTCCTACGTTACAGACCCGGTGAAACCCCCGTCCCAC
TATGAATTAAATTCGTTTtcataaactttcaaaattctATATACAGGgcg
tccctaattaaagtatcgagtcgaaacacaactatgagtagaaagtttta
tgtgcgtgttcacaaaattgtattttaagctctccctcttttttctttgt
cattacaattaatttatacgttgtaactaccttttgtaatgagactgtgt
gatggagaacgttcttatattttagcgataacacacacaaacttttctac
tcaatcgcatgttcaaactcgatactttaattagggacaccctgtagaag
aATTACACTCCAAAACAATCCCCACTAGATTTTTCGACTTAAGAACAATG
AAATGTCCATCCCATCTGCACTGTGAGAAGAAGTTCCATCGGGGCTGTAA
AACAGGGGTGTTATACAAAACACAACtgaaaataaaccagccgaagctgg
aaggtcagccaatagagcttagctagatagctttaataagtgggttaaca
gatgtaagagatgcactgaaacagagtagacta
Run BLAST on NCBI

protein sequence of TCONS_00016877-protein

>TCONS_00016877-protein ID=TCONS_00016877-protein|Name=TCONS_00016877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MLAQQVTWLMKLLTVMVVVFNSMKDVDGNMSCHSGVVPGHSWPKPDIKQC
ASNETKCYMQRVFYSFEIRGCLAPDRYDSCNQRSGPRNITAGLICCCDTP
NCNTYQFRMDCYKQFNETNPWPSAAPTQPPKTTPSSSILLTVSCAQTLGT
VTLIKIISSFV
Run BLAST on NCBI

transcript from alignment at sc0000253:149054..152266-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016877 ID=TCONS_00016877|Name=TCONS_00016877|organism=Clytia hemisphaerica|type=transcript|length=3213bp|location=Sequence derived from alignment at sc0000253:149054..152266- (Clytia hemisphaerica)
GTTCGCGTGTTCTTATCACTAAAGGTAAAAAACAAAGTAGAAACCAACCA
AAAAGATAATGTTGGCACAACAGGTGACATGGCTGATGAAGCTTTTAACA
GTAATGGTTGTGGTCTTCAACAGTATGAAGGATGTGGATGGGAATATGTC
TTGCCATTCAGGAGTGGTACCCGGTCATAGTTGGCCAAAACCTGACATCA
AACAATGCGCATGTACGTACATCTTTCTTTCTTTCTTATACAGCTTTTTT
ATAAGAACAGTCGAGACTCAATAACATCAAAAATGATAACAATCTGAAGA
ACAAAGCTGAGCCTGGGGAATTTTATACAAATGAACGCTAAACGAACGCT
CTCAGTTGTTGGAATGAAATTTAAAAGTCTAAAAACCTTAATTTCGCCTT
TGAAGATAAAAAAAAACATGATAGGAAGAGCCTTTTGTGGTTCTAATGAA
AAAAATAAACAGTTGTACTCGGTCGTTCCTCAATGGAAGGGTGTTGAATA
GATGCTAGCATCGAAAACCTGTTACCAGAGATTTGGGAAAAGAGGATAAG
AAACGCCGCTGCCGCTCGCTGTNCCCTGTCACTTGTAGTTTGTCTTTTAA
ATAGATTTTCAAAAATGATAATTCAATTGATCTGATAAATTCTAACAAGT
TCTTTATAGGATCAATTTTTCTAACCTCAAATGCACACTCGTGACCTGGT
CACCAAGGATTGTACCATTCACTATATCCTCTCTGTAAGTTTTTCCTTAA
CATAATGAATGTTTACCTCGATATTTCTTTCACTTTTTCCAGCAAACGAA
ACTAAATGTTACATGCAGCGAGTATTTTATTCATTTGAGATCCGTGGATG
TTTGGCACCTGACCGATACGATTCTTGCAACCAAAGAAGCGGCCCTAGAA
ACATAACTGCTGGCTTAATATGTTGCTGTGACACGCCCAATTGCAATACG
TACCAATTTCGAATGGACTGTTATAAGCAGTTTAACGAGACTAACCCATG
GCCGTCGGCTGCACCCACACAACCACCGAAAACCACTCCCAGCTCAAGTA
TCTTATTAACTGTATCATGTGCTCAAACTCTCGGAACAGTTACGTTAATT
AAGATTATCAGTAGCTTCGTTTAGAAGAAAAGGTTGGTAGCTGACCAGAT
TCGAAGATATTGAAATATCATAACTTTTGTCGTGTTGGAAACACCTTTGG
AAAGTTTATTTTCTTAGCAAATAAGTTTACACTCAAAGCAAAATTGACTG
TATTTTGTAACTTAGGTTAATAGATTGTATAATTTATCAAATACGATTTG
TAAATATCACAGCTAGACAAAATCCAAATATAGCCAACTGCAGTGGAAGC
TCAGCCAGTTAGACCAGAAGGTTTTACATTAAAGGGGAGGGATTGAACGA
GACTTAAAGAAATCGACAAAAAATACTTCACTCATATCAACTTCGAAGAC
GAGGGAGGGGCCCTCAAGGTAAGTGACCTAACGTAGGCGCGGACTTTAAG
GGTGCGTTTTTCAGAATTCCCAAATAGTACTAAGTAATAAGGACCAATTT
TATGAAAGAAAAAGATTCTCTAAGGAGTGTTAAAGGTGAGAAAAACGAAG
TTTTGAAGGAAAGATTTAGGATGATCTGATCATTTTTTGCTTTAAAAGGA
GCAAAAGTTTTTGGCTAATTTTTTTCTGCTGTACTGCAAGGGTCCAACTT
TAAAGACCTAATTTTTGGCAGCAAGTACGGTGGCTGGAAAAATGAACCCT
AAGTGGATGAAGTTTTGCTAAAATTTGCGAAAAAAAGTGACTCTGAATGG
GACTGAAATTCCAAAACTTTTTATCCAAACTTCCTCAAAAGGAATACCCT
AAAAGGGACTAATTTTTCTATTTTGTTGTTTTTGTGACCCTAACTGGGAG
TCATGGGGTGAAAAAAGTTACCCTGACCAGCAACACATCCCCGTAACCCT
TTTTGCCCAGGTTTGCCCCCCCCCCCCCCGGACAATGCATCCATCCTTTC
TACATATGGCAAATTCTGAAATAGCTTCTCCTTTTCTCTTGTCTCAGTTA
TACCACTTAGGATTTTTTCGAATGTTTTAAACCCAGGATCTAGGCCCGGG
GGAGGCAAACTTAGGGAAAATTGGGTACGGGGACGTACCGCTGGTCAGAG
TTCCTTTTTTAGGCTCTCTGAAGAAGAAATTTACATATTTTGAGGTTTTA
CTCAGAACAGTAGAAGGTTACTACAGGCCAAATGTCTTAAACCATCTGAT
TATCCCATTAACTGTCAATAAATAAATCATAGGAGTATGGATTTTGTGTT
TGTGACATAATAAGTATCTTTGGATCTGCATTTCTCTCTGCTACATTATT
TATGGGTTTGGAAAATATAAATACAAGATACTTCTTTTAGTATAATACAA
CTGGAAAACTTTGTAACTGATTAATGAAGACGGATGAAGACACTTCAAGC
AAATTTCAAGAGAGCTCGATTTAATTTATAATTAAATTATAATTAAATAA
TTTGATTAATACCAATAAAATTCTTTTATAAATTGTTCCAAAACCTTTTC
CTATTGTTTCGGCTTTCTAGCTTCTTAAATTTGCTCAGTTTTTCAACCAA
TACAGTTTGATTTTTTTACCAACAAACCAATTCTTATATAATACTCCTAC
GTTACAGACCCGGTGAAACCCCCGTCCCACTATGAATTAAATTCGTTTTC
ATAAACTTTCAAAATTCTATATACAGGGCGTCCCTAATTAAAGTATCGAG
TCGAAACACAACTATGAGTAGAAAGTTTTATGTGCGTGTTCACAAAATTG
TATTTTAAGCTCTCCCTCTTTTTTCTTTGTCATTACAATTAATTTATACG
TTGTAACTACCTTTTGTAATGAGACTGTGTGATGGAGAACGTTCTTATAT
TTTAGCGATAACACACACAAACTTTTCTACTCAATCGCATGTTCAAACTC
GATACTTTAATTAGGGACACCCTGTAGAAGAATTACACTCCAAAACAATC
CCCACTAGATTTTTCGACTTAAGAACAATGAAATGTCCATCCCATCTGCA
CTGTGAGAAGAAGTTCCATCGGGGCTGTAAAACAGGGGTGTTATACAAAA
CACAACTGAAAATAAACCAGCCGAAGCTGGAAGGTCAGCCAATAGAGCTT
AGCTAGATAGCTTTAATAAGTGGGTTAACAGATGTAAGAGATGCACTGAA
ACAGAGTAGACTA

Coding sequence (CDS) from alignment at sc0000253:149054..152266-

>TCONS_00016877 ID=TCONS_00016877|Name=TCONS_00016877|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at sc0000253:149054..152266- (Clytia hemisphaerica)
CAAACGAAACTAAATGTTACATGCAGCGAGTATTTTATTCATTTGAGATC
CGTGGATGTTTGGCACCTGACCGATACGATTCTTGCAACCAAAGAAGCGG
CCCTAGAAACATAACTGCTGGCTTAATATGTTGCTGTGACACGCCCAATT
GCAATACGTACCAATTTCGAATGGACTGTTATAAGCAGTTTAACGAGACT
AACCCATGGCCGTCGGCTGCACCCACACAACCACCGAAAACCACTCCCAG
CTCAAGTATCTTATTAACTGTATCATGTGCTCAAACTCTCGGAACAGTTA
CGTTAATTAAGATTATCAGTAGCTTCGTTTAGATGTTGGCACAACAGGTG
ACATGGCTGATGAAGCTTTTAACAGTAATGGTTGTGGTCTTCAACAGTAT
GAAGGATGTGGATGGGAATATGTCTTGCCATTCAGGAGTGGTACCCGGTC
ATAGTTGGCCAAAACCTGACATCAAACAATGCGCATCAAACGAAACTAAA
TGTTACATGCAGCGAGTATTTTATTCATTTGAGATCCGTGGATGTTTGGC
ACCTGACCGATACGATTCTTGCAACCAAAGAAGCGGCCCTAGAAACATAA
CTGCTGGCTTAATATGTTGCTGTGACACGCCCAATTGCAATACGTACCAA
TTTCGAATGGACTGTTATAAGCAGTTTAACGAGACTAACCCATGGCCGTC
GGCTGCACCCACACAACCACCGAAAACCACTCCCAGCTCAAGTATCTTAT
TAACTGTATCATGTGCTCAAACTCTCGGAACAGTTACGTTAATTAAGATT
ATCAGTAGCTTCGTTTAGATGTTGGCACAACAGGTGACATGGCTGATGAA
GCTTTTAACAGTAATGGTTGTGGTCTTCAACAGTATGAAGGATGTGGATG
GGAATATGTCTTGCCATTCAGGAGTGGTACCCGGTCATAGTTGGCCAAAA
CCTGACATCAAACAATGCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009446XLOC_009446Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016877-proteinTCONS_00016877-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016877-exon-sc0000253-1575043694:152055..152266TCONS_00016877-exon-sc0000253-1575043694:152055..152266Clytia hemisphaericaexon
TCONS_00016877-exon-sc0000253-1575043694:149054..151474TCONS_00016877-exon-sc0000253-1575043694:149054..151474Clytia hemisphaericaexon
TCONS_00016877-exon-sc0000253-1510915933:152055..152266TCONS_00016877-exon-sc0000253-1510915933:152055..152266Clytia hemisphaericaexon
TCONS_00016877-exon-sc0000253-1510915933:149054..151474TCONS_00016877-exon-sc0000253-1510915933:149054..151474Clytia hemisphaericaexon
TCONS_00016877-exon-sc0000253-1491911889:152055..152266TCONS_00016877-exon-sc0000253-1491911889:152055..152266Clytia hemisphaericaexon
TCONS_00016877-exon-sc0000253-1491911889:149054..151474TCONS_00016877-exon-sc0000253-1491911889:149054..151474Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:149054..152266 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.782931	1.09585	0.799593	0.664673	1.13892	0.952889	2.56414	2.52809	2.19099	1.5813	1.93465	2.0884	11.8471	11.2923	5.14366	6.15141	2.77752	2.48207	36.105	29.0286	0.623255	0.767283	0.402221	0.363245	0.367376	0.645899	0.320444	0.236608	1.43355	1.55748
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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