TCONS_00016865 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016865
Unique NameTCONS_00016865
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1146

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016865 ID=TCONS_00016865|Name=TCONS_00016865|organism=Clytia hemisphaerica|type=transcript|length=1146bp
tctagTCATCCAGATCTTGTCAATACAACCTTCTCATACAGACCAGACTT
AATGGCTCCATGGTCACGCAATGGCGAAAATATACAAATCACCGGCAAAA
CAGGTCATCTGGTCAGTGGTAGAAAACTCCTGAAACCATTTGCTGGAGAA
GAAGAAATCAAATCTTCTGATCACCAACAAATTGTCTGGGATGATATAAT
ATCACCGTTCTTCGATTTGCATCAATTACCAACTATCTTTGAACCAAACA
GCGGCTTTCATCCTGGAGCACCGTTCCCCTGCCCTCAGAAATTGTTGACT
TTCAATCCGCACTACTGGAAGCCAACAATGCACTTTGGTCAAGGTCTATT
CTATTGCTTCGCACATACTATGAATCACGCCCTTCAGAATGGTGGAAAAA
TGGGCGCCGATTTGGACCGCCCCGTGCCAATGCAGTATTTGAGTTTCGAC
GGAACGACGTTATATTTCTTATGGTATCAATTGAACACGCTAGACTTTGA
AAATGAAGGTAGTATTAAAAACATGGCCTGGAGGCAAGAGTTGAAATTAT
TTGATAACGTAACGGAAATTGTAGAGAAAAGGGCTGAAGGGCCGACAGAC
TATAACGACTATGTCGGGAAACGGATGTCCCTTGTAGACTTTGATCGTAA
GAGATTAACAGAGACTCTTGAAAATGAACACACTGTCCGTGTAGGTATTT
ATGGCTTCAATCCGGATGCTGCGAAACGAGAGACCATGGTACTTGCAATT
TGATAAGATCGCAAGATTTTCCTTGTACAACGAAATGTCTAAGATTATGT
TTAGACATTGCGGTTCGAAAAGAGATGGTTCCAACACTACGTGGACACTA
GTGaacacctcaccaaaaaccgggatttttcatcccgtttcttagtgagt
tccactttgatgattttNTGTAGGTATTTATGGCTTCAATCCGGATGCTG
CGAAACGGTTTGTCGATTTTATGCTTTACACTTGATTACTATTCTATTGA
AGATTATATTGCGATATTTCTTATGACTCatgattcttttttattttaat
cgcTAGAGAGACAATGGTACTTGCAATTTGATAAGCTCGCAAGATTTTCC
TTGTACAACGAAATGTCTAAGATTATGTTTAGACATTGCggttcga
Run BLAST on NCBI

transcript from alignment at sc0000253:369925..372112+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016865 ID=TCONS_00016865|Name=TCONS_00016865|organism=Clytia hemisphaerica|type=transcript|length=2188bp|location=Sequence derived from alignment at sc0000253:369925..372112+ (Clytia hemisphaerica)
tctagTCATCCAGATCTTGTCAATACAACCTTCTCATACAGACCAGACTT
AATGGCTCCATGGTCACGCAATGGCGAAAATATACAAATCACCGGCAAAA
CAGGTCATCTGGTCAGTGGTAGAAAACTCCTGAAACCATTTGCTGGAGAA
GAAGAAATCAAATCTTCTGATCACCAACAAATTGTCTGGGATGATATAAT
ATCACCGTTCTTCGATTTGCATCAATTACCAACTATCTTTGAACCAAACA
GCGGCTTTCATCCTGGAGCACCGTTCCCCTGCCCTCAGAAATTGTTGACT
TTCAATCCGCACTACTGGAAGCCAACAATGCACTTTGGTCAAGGTATAAA
CGGATTCTTGTTTTCCTTGTTAACATTTCTGCTCTTTATACCTgattaga
ccatgttcagacattacggttccgtatcgttccgaaacaaaacggttccg
aaacaagtgtgaatgtcaaaattcgaaacgtcaaaaaggaAGACTTTATA
AAGCAAAATGGATCGAAACagtttcgctccactatttttATCAGAACAGA
AATGTTCCGTTTTCTTTCTGAAACCAATttgaacactctcgatccgaTGA
AACTCTATGAAACCGTAAAGTTTGAACATATTCTTAGTGTCTGCTTATAT
TGGATACTTTGTATGCACCTACAAACACTTAAATGATAAGGATGCATGGT
TGGAGTTTTACCAGGTAGCATTGACGTGTAACTGCTTGAAATTTCTGCAT
TTCTGATTTAAACAAGGATAACGAATTTTAACGACATTCCTTCCTGATAA
ATTCAAACCTAGTCTCCCAACAATTTTGATATGTGTATCACAATTTGTCG
GTCTTTGTCTTTGCTGGGATGGTTTGAAATGAACATACATTAGCACTCTT
GTTTGGCTAACCTTAGTTGTTAAGAgctattttaaaattaaaatactact
gctcaaaatactttttttagggtcggggacaaaattttgagtctggccAA
GTCTTTCTCGAATTGAAATAAacattcaaataaataaaatttacttttca
aaaCCAGTTTAAAGGGTGTAAATTGAAAGCATTAAAGAAAATTATTGCTT
CGAAAATTTATTCATCCTTGCCACAAAAACCGCCCCATTTGAAGAGCTAT
TCATCGCTTTTTCAGGTGTGATATTAGGCCCGGCGGGTGGTAAATTTTGC
CGGTCCAAGGCATGAAAAAACATCACAATTCACCAGTCTAAAATTTCGGT
TCGCTCTTCTAATCTTATAGGTCTATTCTATTGCTTCGCACATACTATGA
ATCACGCCCTTCAGAATGGTGGAAAAATGGGCGCCGATTTGGACCGCCCC
GTGCCAATGCAGTATTTGAGTTTCGACGGAACGACGTTATATTTCTTATG
GTATCAATTGAACACGCTAGACTTTGAAAATGAAGGTAGTATTAAAAACA
TGGCCTGGAGGCAAGAGTTGAAATTATTTGATAACGTAACGGAAATTGTA
GAGAAAAGGGCTGAAGGGCCGACAGACTATAACGACTATGTCGGGAAACG
GATGTCCCTTGTAGACTTTGATCGTAAGAGATTAACAGAGACTCTTGAAA
ATGAACACACTGTCCGTGTAGGTATTTATGGCTTCAATCCGGATGCTGCG
AAACGGTTTGTCGATTTTATGCTTTACACTTGATTTTCTATTTCGAAGAT
TACTGTTCTATTGAAGATTATTTTGCGATATTTTTTATGACTCAtgattc
tttttcattttaatcGCTAGAGAGACCATGGTACTTGCAATTTGATAAGA
TCGCAAGATTTTCCTTGTACAACGAAATGTCTAAGATTATGTTTAGACAT
TGCGGTTCGAAAAGAGATGGTTCCAACACTACGTGGACACTAGTGaacac
ctcaccaaaaaccgggatttttcatcccgtttcttagtgagttccacttt
gatgattttNTGTAGGTATTTATGGCTTCAATCCGGATGCTGCGAAACGG
TTTGTCGATTTTATGCTTTACACTTGATTACTATTCTATTGAAGATTATA
TTGCGATATTTCTTATGACTCatgattcttttttattttaatcgcTAGAG
AGACAATGGTACTTGCAATTTGATAAGCTCGCAAGATTTTCCTTGTACAA
CGAAATGTCTAAGATTATGTTTAGACATTGCggttcga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009441XLOC_009441Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016865-exon-sc0000253-1491911889:369925..370267TCONS_00016865-exon-sc0000253-1491911889:369925..370267Clytia hemisphaericaexon
TCONS_00016865-exon-sc0000253-1510915933:369925..370267TCONS_00016865-exon-sc0000253-1510915933:369925..370267Clytia hemisphaericaexon
TCONS_00016865-exon-sc0000253-1575043694:369925..370267TCONS_00016865-exon-sc0000253-1575043694:369925..370267Clytia hemisphaericaexon
TCONS_00016865-exon-sc0000253-1491911889:371195..371579TCONS_00016865-exon-sc0000253-1491911889:371195..371579Clytia hemisphaericaexon
TCONS_00016865-exon-sc0000253-1510915933:371195..371579TCONS_00016865-exon-sc0000253-1510915933:371195..371579Clytia hemisphaericaexon
TCONS_00016865-exon-sc0000253-1575043694:371195..371579TCONS_00016865-exon-sc0000253-1575043694:371195..371579Clytia hemisphaericaexon
TCONS_00016865-exon-sc0000253-1491911889:371695..372112TCONS_00016865-exon-sc0000253-1491911889:371695..372112Clytia hemisphaericaexon
TCONS_00016865-exon-sc0000253-1510915933:371695..372112TCONS_00016865-exon-sc0000253-1510915933:371695..372112Clytia hemisphaericaexon
TCONS_00016865-exon-sc0000253-1575043694:371695..372112TCONS_00016865-exon-sc0000253-1575043694:371695..372112Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:369925..372112 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
57.0571	54.1436	20.6127	17.1168	25.0133	21.192	19.568	18.5321	24.0091	23.0896	18.8943	18.2496	15.3739	15.5423	19.5227	16.8344	41.5693	36.6245	8.58758	8.96142	28.6418	27.8716	63.6374	55.4662	24.7195	28.5225	17.7336	15.1025	38.7047	42.2292
Blast
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BLAST of TCONS_00016865 vs. Swiss-Prot (Human)
Match: RM37 (39S ribosomal protein L37, mitochondrial OS=Homo sapiens GN=MRPL37 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.786e-17
Identity = 52/182 (28.57%), Postives = 83/182 (45.60%), Query Frame = 1 
Query:    7 HPDLVNTTFSYRPDLMAPWSRNGENIQITGKTGHLVSGRKLLKPFAGEEEIKSSDHQQIVWDDIISPFFDLHQLPTIFEP--NSGFHPGAPFPCPQKLLTFN-----PHYWKPTMHFGQGLFYCFAHTMNHALQNGGKMGADLDRPVPMQYLSFDGTTLYFLWYQLNTLDFENEGSIKNMAW 531
            HP L            A W+R    +Q+ G  G  +S +  L   A  EEI+++ +  +     ISP  DLH+   I++   ++GF  G P+P P  L   +     PH  +P     + + + F   +  A    G     L++PV +Q +  DG   +FL +QLNT D +    +KN+AW
Sbjct:  195 HPSLARRICVQNSTFSATWNRESLLLQVRGSGGARLSTKDPLPTIASREEIEATKNHVLETFYPISPIIDLHEC-NIYDVKNDTGFQEGYPYPYPHTLYLLDKANLRPHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRVFHFLVFQLNTTDLDCNEGVKNLAW 375
The following BLAST results are available for this feature:
BLAST of TCONS_00016865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM372.786e-1728.5739S ribosomal protein L37, mitochondrial OS=Homo s... [more]
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