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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016855 ID=TCONS_00016855|Name=TCONS_00016855|organism=Clytia hemisphaerica|type=transcript|length=1463bp
CTGAgtgataaagaaaaacaaagccATATAAACACCAGGAATGTTCACAT
AAGTTACGTGCCAAGCACCAATGTTGAAATCGACCGTCGTAAACATGAAA
TTAACTCCAGGTCCAACAATGAAACCAAGTGCAAATGCCATTCCCATGGA
AGAAAATCTACTGAGGACTTCTGAATCTGGATAACATCTTGCAATCTCTC
CAGAAATCACCGACCTGAGTGGCCCATCAGCGCCAGACACCAATCGGCCG
AAAACCAAGAACCAAGGCGAGAAATGGAAAGCATACATTATGTTACCGAT
GATAACTAAGGTGTTGCAGATCAGGAAGATTTGACGTACTTTACGCGTGC
GGTCGACCCACCGTCCGATGAAGACTGATAAGATAACAGCTGCAATCAGG
TACGAGGAAGCTACTAAGCTGTAGAATAGCTTTGGCTGATCTGTGTTGAT
CATTTCCTTGATGTACAGCCAGAGTGTGAGAAATGTCACCGAATATTCCA
TACCTAGCATGATACACTCCAATGTGAAAGCTTTGGTTGTCCAATAACGT
TTGCGTTCCCATTGCTTGATGTCTACAGGCTCGTCACTCCCTGCTTCTTT
ATCTAggtttttgtacattttgttggTAAGATTAAAGCTACGTATCTAGT
ATTCAGTATCCAGTatcgattttcaaattttaaatggaGAATTTCCAGCT
ATATATGAGTTTTCATGTCATAAATGTTTCAAATGAAAGCACATGAAAGA
TTGATATTGAATCTAACGAACAGACCTTGCACTTTTTATAGGTGTCTACA
CACGTTCTTAACACCTTATAAGGATATCCGGAGGTACGGCAGACAGACTT
GTCAAACTGGTTTGACTAAGATCAACGGACTTTTATTGTTAAGAAATATG
TGATTCagcgttttcattttattaatttcaattaatttcaattaatttca
attaattaacattAACTGCTAAACGTAGGAGGTCCATTTGGGGCTAACGA
CACTTCCGCTAGGCCCCAGAACGACATAACATAACACACAAAATGATTTC
CGTCCTGGTCCTAACGACCATAACTTACGAAATTGCCTATCCGACAAATG
GTATAAAATCACCCAAAAATATGACCTAGAGAGGAAAAGAGAAGAGAAGA
GAAGGAGACACATACGAAAACAACAAACACCAAGAGTCGCCGAGAAGCAC
GAGTTTAACATCCTTGTTTTTACCGTCTTTGGAGAAGATTTAGTTAACGT
CGAAAGTATCTTTGTTGGAATATTCTGAACTTTTTATATGGTGTTGGATT
ATCATTTAAATAACATGTAGaggtttttcacaaaaaaacttaTTAATGAT
TGTTGGGAAATGGACATCAGTTCATCAGTTATCAGTATTTGGTTAAATTT
GTGATTTTCTAAAACCATTTACTCTATACTAAAATATACTTAATTTTGTA
TCTCAAAATAGAG Run BLAST on NCBI transcript from alignment at sc0000253:185564..187171+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016855 ID=TCONS_00016855|Name=TCONS_00016855|organism=Clytia hemisphaerica|type=transcript|length=1608bp|location=Sequence derived from alignment at sc0000253:185564..187171+ (Clytia hemisphaerica)
CTGAgtgataaagaaaaacaaagccATATAAACACCAGGAATGTTCACAT
AAGTTACGTGCCAAGCACCAATGTTGAAATCGACCGTCGTAAACATGAAA
TTAACTCCAGGTCCAACAATGAAACCAAGTGCAAATGCCATTCCCATGGA
AGAAAATCTACTGAGGACTTCTGAATCTGGATAACATCTTGCAATCTCTC
CAGAAATCACCGACCTGAGTGGCCCATCAGCGCCAGACACCAATCGGCCG
AAAACCAAGAACCAAGGCGAGAAATGGAAAGCATACATTATGTTACCGAT
GATAACTAAGGTGTTGCAGATCAGGAAGATTTGACGTACTTTACGCGTGC
GGTCGACCCACCGTCCGATGAAGACTGATAAGATAACAGCTGCAATCAGG
TACGAGGAAGCTACTAAGCTGTAGAATAGCTTTGGCTGATCTGTGTTGAT
CATTTCCTTGATGTACAGCCAGAGTGTGAGAAATGTCACCGAATATTCCA
TACctacaaaaaagaagaattgattTGTTCAAAAACTGTTCGGGATGGTT
AATATTGACTGATGAACGTCATTGAAAAGGATTGCTATCAGAGTAAGGAA
AAACAAAGTAACTGGATTCGAATCAGTATTTTATGATTCAAAACATACCT
AGCATGATACACTCCAATGTGAAAGCTTTGGTTGTCCAATAACGTTTGCG
TTCCCATTGCTTGATGTCTACAGGCTCGTCACTCCCTGCTTCTTTATCTA
ggtttttgtacattttgttggTAAGATTAAAGCTACGTATCTAGTATTCA
GTATCCAGTatcgattttcaaattttaaatggaGAATTTCCAGCTATATA
TGAGTTTTCATGTCATAAATGTTTCAAATGAAAGCACATGAAAGATTGAT
ATTGAATCTAACGAACAGACCTTGCACTTTTTATAGGTGTCTACACACGT
TCTTAACACCTTATAAGGATATCCGGAGGTACGGCAGACAGACTTGTCAA
ACTGGTTTGACTAAGATCAACGGACTTTTATTGTTAAGAAATATGTGATT
Cagcgttttcattttattaatttcaattaatttcaattaatttcaattaa
ttaacattAACTGCTAAACGTAGGAGGTCCATTTGGGGCTAACGACACTT
CCGCTAGGCCCCAGAACGACATAACATAACACACAAAATGATTTCCGTCC
TGGTCCTAACGACCATAACTTACGAAATTGCCTATCCGACAAATGGTATA
AAATCACCCAAAAATATGACCTAGAGAGGAAAAGAGAAGAGAAGAGAAGG
AGACACATACGAAAACAACAAACACCAAGAGTCGCCGAGAAGCACGAGTT
TAACATCCTTGTTTTTACCGTCTTTGGAGAAGATTTAGTTAACGTCGAAA
GTATCTTTGTTGGAATATTCTGAACTTTTTATATGGTGTTGGATTATCAT
TTAAATAACATGTAGaggtttttcacaaaaaaacttaTTAATGATTGTTG
GGAAATGGACATCAGTTCATCAGTTATCAGTATTTGGTTAAATTTGTGAT
TTTCTAAAACCATTTACTCTATACTAAAATATACTTAATTTTGTATCTCA
AAATAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016855-exon-sc0000253-1491911889:185564..186062 | TCONS_00016855-exon-sc0000253-1491911889:185564..186062 | Clytia hemisphaerica | exon |
| TCONS_00016855-exon-sc0000253-1510915933:185564..186062 | TCONS_00016855-exon-sc0000253-1510915933:185564..186062 | Clytia hemisphaerica | exon |
| TCONS_00016855-exon-sc0000253-1575043694:185564..186062 | TCONS_00016855-exon-sc0000253-1575043694:185564..186062 | Clytia hemisphaerica | exon |
| TCONS_00016855-exon-sc0000253-1491911889:186208..187171 | TCONS_00016855-exon-sc0000253-1491911889:186208..187171 | Clytia hemisphaerica | exon |
| TCONS_00016855-exon-sc0000253-1510915933:186208..187171 | TCONS_00016855-exon-sc0000253-1510915933:186208..187171 | Clytia hemisphaerica | exon |
| TCONS_00016855-exon-sc0000253-1575043694:186208..187171 | TCONS_00016855-exon-sc0000253-1575043694:186208..187171 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:185564..187171 + |
Blast
The following BLAST results are available for this feature:
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