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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016838 ID=TCONS_00016838|Name=TCONS_00016838|organism=Clytia hemisphaerica|type=transcript|length=691bp
CAAAGTTGGTATAAATACTTGAAAATCATATTCATTGCATCAAAAGTAGA
AGTACGACGGTAGACGACAAGATTTTAAGAAGAAGAAATGTTGACTAAGA
TTTTTATCGTCGTTATTTTAACCATCGCTCTGGCCCATGGCCAGCCACGA
AAAAATTTTAAAGAGTGCATCATGTCACGTGCCAAAAGAGCTGTAGCAGG
ATGCAAAGGAGATACCTGTTTTCGAAGCATCCATGGTGTCATCTTACGGA
AAGGTCAATCGCTTGTTTCGAGAAATAGTCGTTACAAGCTCTCTATGCAA
CATGATGGTAACTTGGTCATATCTATTGTCTTGGTAACCGTGTCGTTTGG
TTCTCCAAAACCAATGGTATTGCAATCAAAAATGGACTCTATGTTCAAGG
TGATGGAAATCTTGTTTTGTACAAATACAACAACCAAGTCGTATGGAATT
CAGGAACACACGGTACCGAAGTCGAAAGATTTGTCATGCAAAATGACGGA
AACCTTGTCGCTTACGGAAAACATGGTACATCATACTGGTCGACAGGTAC
TCACGGAAGATGTTAAGTGGATTGCTTAACAATTTATTTCGGATACAACT
CCTTATAGTAATCCTTATTGATATCTTTCTGTACTTATTTGTTTTCATAG
CTTTTTTGTATTAGAGGAATAAGATAACTGATCTTTCTGGG Run BLAST on NCBI protein sequence of TCONS_00016838-protein >TCONS_00016838-protein ID=TCONS_00016838-protein|Name=TCONS_00016838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MLTKIFIVVILTIALAHGQPRKNFKECIMSRAKRAVAGCKGDTCFRSIHG
VILRKGQSLVSRNSRYKLSMQHDGNLVISIVLVTVSFGSPKPMVLQSKMD
SMFKVMEILFCTNTTTKSYGIQEHTVPKSKDLSCKMTETLSLTENMVHHT
GRQVLTEDVKWIA Run BLAST on NCBI transcript from alignment at sc0000253:41178..43026+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016838 ID=TCONS_00016838|Name=TCONS_00016838|organism=Clytia hemisphaerica|type=transcript|length=1849bp|location=Sequence derived from alignment at sc0000253:41178..43026+ (Clytia hemisphaerica)
CAAAGTTGGTATAAATACTTGAAAATCATATTCATTGCATCAAAAGTAGA
AGTACGACGGTAGACGACAAGATTTTAAGAAGAAGAAATGTTGACTAAGA
TTTTTATCGTCGTTATTTTAACCATCGCTCTGGCCCATGGCCAGCCACGA
AAAAGTAAGTAAAATATAAGAAATTCTTTGTTTGTTGATTTTGTCGTCTT
TCCTTTTTATCTTGGCgttaaaaactttgtaaaaataGCCTTTATCACAT
AGTTCGGAACTACCCCCCTAGCTTAGAGCATCCCCCCCTACTCTAGTTTC
TACCTAGATGGACCCCCCTCAAAGTCGGTGTCATCGGGATTTCTTCCCCC
ACTTTCAAGACATTATACACTACTCGTATGGTTAACTAAAATGATAACAT
ATTCACTCTTAAAAGAGGTACTTTTGTGTTTATTCGTAATATTCCTTCTG
AAAATTGGTCAGGatagaaaatttttaggattttgaCCCAGTCCAAGACT
GCCAaacttgatatttagaaagATGGGTTCAAAGAGCTTTGCAAACGCGT
TAACCCCCTTTCCAGATGAATCTCCccctttttgaaagaaattctcTTTT
GAAAACTTCCCCCTTTCAGAGAATTTTTGAACATCGCTACCCATAGTGCT
GGGTGCCCCTATGTAtcgttttgtatatttttaaaatgttccacATTTAT
CTAATTGCCTTGggaattgaaaaagaagaaaaaagattctatctaatttt
gaaatttccgacAGATCAGGGACTTTAATATGAAATCTATTAATTGCTTT
CGATAGATTTTAAAGAGTGCATCATGTCACGTGCCAAAAGAGCTGTAGCA
GGATGCAAAGGAGATACCTGTTTTCGAAGCATCCATGGTGTCATCTTACG
GAAAGGTCAATCGCTTGTTTCGAGAAATAGTCGTTACAAGCTCTCTATGC
AACATGATGGTAACTTGGTCATATCTATTGTCTTGGTAACCGTGTCGTTT
GGTTCTCCAAAACCAATGGTATTGCAATCAAAAATGGACTCTATGTTCAA
GGTAAGTACGTCAGTACGTCAGCTAGTTTTTGGATGAACTGCTTCCTCAT
CtttgtttttctggagttttaTTAGATTTTTCTGCATGTATTTAACAATG
TAATATTTTTTGTCGCGTTCTGGCAGAAAGAAGTGACCCTGATGATCAAA
ACTAAAATCTGAATTTAAACTTTGTAATCATCTCAAGGTTGACCTTCTTA
AAATCCGGCTTTCTCAAAATCATTAATTTTGTAGTTCACTTTTTATTGTT
ATTGTGGAAACGAGGTAAGATCTGGGTTGGGTCGGGTTTTTGAATTGGCT
CACTTCGGTTACCTTTATATCAATATGTTGCAGTTTTTTAAATACCTCTC
CTGATCTTGGAGGTACAGTTTagtatttttggaaaaaaatcaaaagatca
aCAAACCGTTTTTAAGGCATCTGAGAATTATGAGCCCCGCGAGTAGACTT
AGATACCATGCAAATTTATATTTTAGGGTTAATCAATATCATCCTTATTC
ATCAAAGGTGATGGAAATCTTGTTTTGTACAAATACAACAACCAAGTCGT
ATGGAATTCAGGAACACACGGTACCGAAGTCGAAAGATTTGTCATGCAAA
ATGACGGAAACCTTGTCGCTTACGGAAAACATGGTACATCATACTGGTCG
ACAGGTACTCACGGAAGATGTTAAGTGGATTGCTTAACAATTTATTTCGG
ATACAACTCCTTATAGTAATCCTTATTGATATCTTTCTGTACTTATTTGT
TTTCATAGCTTTTTTGTATTAGAGGAATAAGATAACTGATCTTTCTGGG Coding sequence (CDS) from alignment at sc0000253:41178..43026+ >TCONS_00016838 ID=TCONS_00016838|Name=TCONS_00016838|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at sc0000253:41178..43026+ (Clytia hemisphaerica)
ATGTTGACTAAGATTTTTATCGTCGTTATTTTAACCATCGCTCTGGCCCA
TGGCCAGCCACGAAAAAATTTTAAAGAGTGCATCATGTCACGTGCCAAAA
GAGCTGTAGCAGGATGCAAAGGAGATACCTGTTTTCGAAGCATCCATGGT
GTCATCTTACGGAAAGGTCAATCGCTTGTTTCGAGAAATAGTCGTTACAA
GCTCTCTATGCAACATGATGGTAACTTGGTCATATCTATTGTCTTGGTAA
CCGTGTCGTTTGGTTCTCCAAAACCAATGGTATTGCAATCAAAAATGGAC
TCTATGTTCAAGGTGATGGAAATCTTGTTTTGTACAAATACAACAACCAA
GTCGTATGGAATTCAGGAACACACGGTACCGAAGTCGAAAGATTTGTCAT
GCAAAATGACGGAAACCTTGTCGCTTACGGAAAACATGGTACATCATACT
GGTCGACAGGTACTCACGGAAGATGTTAAGTGGATTGCTTAAATGTTGAC
TAAGATTTTTATCGTCGTTATTTTAACCATCGCTCTGGCCCATGGCCAGC
CACGAAAAAATTTTAAAGAGTGCATCATGTCACGTGCCAAAAGAGCTGTA
GCAGGATGCAAAGGAGATACCTGTTTTCGAAGCATCCATGGTGTCATCTT
ACGGAAAGGTCAATCGCTTGTTTCGAGAAATAGTCGTTACAAGCTCTCTA
TGCAACATGATGGTAACTTGGTCATATCTATTGTCTTGGTAACCGTGTCG
TTTGGTTCTCCAAAACCAATGGTATTGCAATCAAAAATGGACTCTATGTT
CAAGGTGATGGAAATCTTGTTTTGTACAAATACAACAACCAAGTCGTATG
GAATTCAGGAACACACGGTACCGAAGTCGAAAGATTTGTCATGCAAAATG
ACGGAAACCTTGTCGCTTACGGAAAACATGGTACATCATACTGGTCGACA
GGTACTCACGGAAGATGTTAAGTGGATTGCTTAAATGTTGACTAAGATTT
TTATCGTCGTTATTTTAACCATCGCTCTGGCCCATGGCCAGCCACGAAAA
AATTTTAAAGAGTGCATCATGTCACGTGCCAAAAGAGCTGTAGCAGGATG
CAAAGGAGATACCTGTTTTCGAAGCATCCATGGTGTCATCTTACGGAAAG
GTCAATCGCTTGTTTCGAGAAATAGTCGTTACAAGCTCTCTATGCAACAT
GATGGTAACTTGGTCATATCTATTGTCTTGGTAACCGTGTCGTTTGGTTC
TCCAAAACCAATGGTATTGCAATCAAAAATGGACTCTATGTTCAAGGTGA
TGGAAATCTTGTTTTGTACAAATACAACAACCAAGTCGTATGGAATTCAG
GAACACACGGTACCGAAGTCGAAAGATTTGTCATGCAAAATGACGGAAAC
CTTGTCGCTTACGGAAAACATGGTACATCATACTGGTCGACAGGTACTCA
CGGAAGATGTTAAGTGGATTGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016838-exon-sc0000253-1491911889:41178..41331 | TCONS_00016838-exon-sc0000253-1491911889:41178..41331 | Clytia hemisphaerica | exon |
| TCONS_00016838-exon-sc0000253-1510915933:41178..41331 | TCONS_00016838-exon-sc0000253-1510915933:41178..41331 | Clytia hemisphaerica | exon |
| TCONS_00016838-exon-sc0000253-1575043694:41178..41331 | TCONS_00016838-exon-sc0000253-1575043694:41178..41331 | Clytia hemisphaerica | exon |
| TCONS_00016838-exon-sc0000253-1491911889:41984..42228 | TCONS_00016838-exon-sc0000253-1491911889:41984..42228 | Clytia hemisphaerica | exon |
| TCONS_00016838-exon-sc0000253-1510915933:41984..42228 | TCONS_00016838-exon-sc0000253-1510915933:41984..42228 | Clytia hemisphaerica | exon |
| TCONS_00016838-exon-sc0000253-1575043694:41984..42228 | TCONS_00016838-exon-sc0000253-1575043694:41984..42228 | Clytia hemisphaerica | exon |
| TCONS_00016838-exon-sc0000253-1491911889:42735..43026 | TCONS_00016838-exon-sc0000253-1491911889:42735..43026 | Clytia hemisphaerica | exon |
| TCONS_00016838-exon-sc0000253-1510915933:42735..43026 | TCONS_00016838-exon-sc0000253-1510915933:42735..43026 | Clytia hemisphaerica | exon |
| TCONS_00016838-exon-sc0000253-1575043694:42735..43026 | TCONS_00016838-exon-sc0000253-1575043694:42735..43026 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:41178..43026 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001480 | Bulb-type_lectin_dom |
Blast
The following BLAST results are available for this feature:
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