TCONS_00016829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016829
Unique NameTCONS_00016829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016829 ID=TCONS_00016829|Name=TCONS_00016829|organism=Clytia hemisphaerica|type=transcript|length=450bp
TTAATCGGttaaatatttcgaaaattgagtatagaatttgaacaaaatag
aactttaagatttaaaaaattaaaaaaactcaatatttaaaactttaaaa
ctgcTAACAAAGTTATGTGCCTTTTCTTCGTTTTGTCTCACTTGGTCCTT
GGTACTTGGAACAATTTCCGTCGACAAAGTCGGTTTTATTTTCGATAgga
gttttgttgttttgatctGTCCCACTTGAACAATTCACATTGTCTGttgg
tttttcattttcctcGTTGTCGTCCTCTAGCCACTTTGGCAGAGTTCGCT
TAAAGCGGACTTTGTAAATTTTCTTACGACGACTCCAGAATTTGACAATC
TCCTCCACAGTCGTTAAGCTCTCtggaatgtcttcattttcggTTTCTGA
GGTCACATAGCCCTCCGAAACAACAACAACGTCGCTCATTGCGATGTTAG
Run BLAST on NCBI

protein sequence of TCONS_00016829-protein

>TCONS_00016829-protein ID=TCONS_00016829-protein|Name=TCONS_00016829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
NIAMSDVVVVSEGYVTSETENEDIPESLTTVEEIVKFWSRRKKIYKVRFK
RTLPKWLEDDNEENEKPTDNVNCSSGTDQNNKTPIENKTDFVDGNCSKYQ
GPSETKRRKGT
Run BLAST on NCBI

transcript from alignment at sc0000252:347951..348400

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016829 ID=TCONS_00016829|Name=TCONS_00016829|organism=Clytia hemisphaerica|type=transcript|length=450bp|location=Sequence derived from alignment at sc0000252:347951..348400 (Clytia hemisphaerica)
CTAACATCGCAATGAGCGACGTTGTTGTTGTTTCGGAGGGCTATGTGACC
TCAGAAAccgaaaatgaagacattccaGAGAGCTTAACGACTGTGGAGGA
GATTGTCAAATTCTGGAGTCGTCGTAAGAAAATTTACAAAGTCCGCTTTA
AGCGAACTCTGCCAAAGTGGCTAGAGGACGACAACgaggaaaatgaaaaa
ccaaCAGACAATGTGAATTGTTCAAGTGGGACagatcaaaacaacaaaac
tccTATCGAAAATAAAACCGACTTTGTCGACGGAAATTGTTCCAAGTACC
AAGGACCAAGTGAGACAAAACGAAGAAAAGGCACATAACTTTGTTAgcag
ttttaaagttttaaatattgagtttttttaattttttaaatcttaaagtt
ctattttgttcaaattctatactcaattttcgaaatatttaaCCGATTAA

Coding sequence (CDS) from alignment at sc0000252:347951..348400

>TCONS_00016829 ID=TCONS_00016829|Name=TCONS_00016829|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000252:347951..348400 (Clytia hemisphaerica)
AACATCGCAATGAGCGACGTTGTTGTTGTTTCGGAGGGCTATGTGACCTC
AGAAAccgaaaatgaagacattccaGAGAGCTTAACGACTGTGGAGGAGA
TTGTCAAATTCTGGAGTCGTCGTAAGAAAATTTACAAAGTCCGCTTTAAG
CGAACTCTGCCAAAGTGGCTAGAGGACGACAACgaggaaaatgaaaaacc
aaCAGACAATGTGAATTGTTCAAGTGGGACagatcaaaacaacaaaactc
cTATCGAAAATAAAACCGACTTTGTCGACGGAAATTGTTCCAAGTACCAA
GGACCAAGTGAGACAAAACGAAGAAAAGGCACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009426XLOC_009426Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016829-proteinTCONS_00016829-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016829-exon-sc0000252-1491911889:347951..348400TCONS_00016829-exon-sc0000252-1491911889:347951..348400Clytia hemisphaericaexon
TCONS_00016829-exon-sc0000252-1510915933:347951..348400TCONS_00016829-exon-sc0000252-1510915933:347951..348400Clytia hemisphaericaexon
TCONS_00016829-exon-sc0000252-1575043694:347951..348400TCONS_00016829-exon-sc0000252-1575043694:347951..348400Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:347951..348400 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.287107	0.166679	0	0	0	0.189262	0.531555	0.124052	0.460973	1.04401	0	3.42668	2.33853	0.334364	1.25588	0.663062	0.11327	0	2.1288	0	0	0	0	0	0.141059	1.81669	0.215425	0.816961	0.166471
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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