TCONS_00016804 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016804
Unique NameTCONS_00016804
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016804 ID=TCONS_00016804|Name=TCONS_00016804|organism=Clytia hemisphaerica|type=transcript|length=429bp
NNACACGGGCCTTATCTTAGTGGTGACCTTGTCTTCACGGATAACTGGTC
TATGGGGAATGTAATGAACGGTACCCTCTTCTTTCGCAATCTGCGCCTCA
GGCACACGTTCGATAATTCCGTCTTTCTCataatcaataaaaattttctc
gTAGTCAGTATTAATACCAAGACGATCGAGACGCGAATTAAGCGATTCCA
GACGTTTCACACAGGTCGAAAAGTTGTCAGGCACACTCTCGTGGTCAGGC
TTGAAAGGCAGTTTCGCGACATACCTAGTACCATCATGGTAAATGTCTTT
GGTAAATTGGTTAATCACTGAGTTATCCTCGGCACTCTCTGCCTCCTCTA
TCTGCCAAAACTTATGGAGCTTGGCATCAAGTGGATCAACAGTTTGTACC
TCAACTCTCATTTGATGACTATAAGTTAC
Run BLAST on NCBI

transcript from alignment at sc0000252:8421..8849-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016804 ID=TCONS_00016804|Name=TCONS_00016804|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at sc0000252:8421..8849- (Clytia hemisphaerica)
NNACACGGGCCTTATCTTAGTGGTGACCTTGTCTTCACGGATAACTGGTC
TATGGGGAATGTAATGAACGGTACCCTCTTCTTTCGCAATCTGCGCCTCA
GGCACACGTTCGATAATTCCGTCTTTCTCATAATCAATAAAAATTTTCTC
GTAGTCAGTATTAATACCAAGACGATCGAGACGCGAATTAAGCGATTCCA
GACGTTTCACACAGGTCGAAAAGTTGTCAGGCACACTCTCGTGGTCAGGC
TTGAAAGGCAGTTTCGCGACATACCTAGTACCATCATGGTAAATGTCTTT
GGTAAATTGGTTAATCACTGAGTTATCCTCGGCACTCTCTGCCTCCTCTA
TCTGCCAAAACTTATGGAGCTTGGCATCAAGTGGATCAACAGTTTGTACC
TCAACTCTCATTTGATGACTATAAGTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009405XLOC_009405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016804-exon-sc0000252-1575043694:8421..8849TCONS_00016804-exon-sc0000252-1575043694:8421..8849Clytia hemisphaericaexon
TCONS_00016804-exon-sc0000252-1510915933:8421..8849TCONS_00016804-exon-sc0000252-1510915933:8421..8849Clytia hemisphaericaexon
TCONS_00016804-exon-sc0000252-1491911889:8421..8849TCONS_00016804-exon-sc0000252-1491911889:8421..8849Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:8421..8849 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.58898	0	0	0	86.1763	76.3508	6.62703	6.3841	0.870391	1.91374	0.642857	0.449979	0.43983	0.306786	0.527881	0.834592	0.510679	1.34693	0.556118	2.04563	0.324773	0.793101	0	0	0.905814	2.17682	0	0	0.60714	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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