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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016793 ID=TCONS_00016793|Name=TCONS_00016793|organism=Clytia hemisphaerica|type=transcript|length=1684bp
TTTCTCTCGTCCACCCGAACCGTATATAAAGAGAGAAGCATTTGGTAGGT
GGTTCAAATCAAATCATTACACAAACATTGAACAAAGTTTCAATATCTCT
CTCAAGAAAAATATTACCGTCTGTTATTTTACAAAACAAGATTCTCATTC
GAAGATTGATTTGGGGGTATTTCACAAAACAGTTATCTTTTGGTGAAAGG
AGTTTGAGCACCACTTGTGGTTATTGAAAAGCATAAAGAAAGAGCATCGA
ATTACATTGTGTCAACACTACTACTGCTTTGCTGTGTTTTATAAACATTT
TGACAACCTCTTCATTCGCTTGCATTCCTTCGCTTCATTTGGTGAAAGCA
CATTGAAGAGTGAAGACGCACGCGCACTACGGAAATTTCGCTTCAACTTT
ATACCATGAACGCTTGCTGATAAATCACTTTCCTTTATCGAGATCagaaa
tcaacttttattttgtaatttatATCGAAACTTTTACTTATTGATATATA
CACGTAAAAATGGAATTGAGGTGTACGTTATTCCAATGTTTTTACGTATT
GTTAACGCTACAAGAGACCTTTACGTTATATTTACCGTCACGTTATCGGC
GCTTCCCGTTACGCCATTTGGTACATCCGTCTGTGAATATGGTCGACGAA
CTTTACGAATCTACGTTAGAATATTACGGAAGTGACCGTCGCACACATAC
AGTATCCCGTGAcgaaaaacaaacaggagaaaACTTTTTACGAGACACTC
TAAGCAAAAATAAAGTCGAGAAAAACACATTAACTTTTACGTCATTATCA
ACGGCGTCAACCAAAAAGACGACGACAACGACGACGACATCAAAACTTGA
CGTACGTCAAACGCAAACTAATCAACATCATCGTGTAGCTAAAGACACTG
ATATTGTTATTGCGAGTTTGATCGTAAGAGACAGTGACGGCAAAGAACAT
AAAAAGTTTGTAGTCATGAAAAACAAGAAGCGACATATCGTACGACAACC
AAAACCAAGGACTAAAGTTCACGCTTGGTGGGGTTGATTCATCTTCCGCT
CCTCGGGTTTTTTAGGTAGTTgttttcaaattagttttttgattttttta
ttaattggctttttttatttaaagcgGTGGCAATATGTATTGATAATTAA
CCGGGTTTGCTTTGAGAAGTTCGACTCTAGTCGGATTCCTTccttttgaa
agtatttttttcaaattaataaaAGAATTCAGAGTTACATACATTTAACC
GAGGAGTGATGAAAACATTTCTACTTAATTAAATTAGCCTTTTCTATGTA
TGTCTATTTAAACTGATGTATGTCTACAAAAAGACATGCTAATGAAAAGT
CATGTAATGTCAACATGACGCGAATTTGTTATACAAgaaaaaatacctca
aaaatGAAGTCCTTCCTTGCATTGATAGAGGCTGGCTCTCTAAAATGCAA
TCTATAATTATTGAACACCCGGACTGGACCGCCCATTTAAAACTTTGCGC
CCGCtttcatttgctttttaattacttttttttgttaTGCCCTTAAAACA
GAGAGATTTAGTAGTTAGATTTTCTAAAAAGAACTTATTTTATGTAAAAT
ATTAAAGtattaaaagaaagaaatacctttatatattattttattattct
atTATTGTGAATACATGTTTATAAGTAAATAAAT Run BLAST on NCBI protein sequence of TCONS_00016793-protein >TCONS_00016793-protein ID=TCONS_00016793-protein|Name=TCONS_00016793-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MELRCTLFQCFYVLLTLQETFTLYLPSRYRRFPLRHLVHPSVNMVDELYE
STLEYYGSDRRTHTVSRDEKQTGENFLRDTLSKNKVEKNTLTFTSLSTAS
TKKTTTTTTTSKLDVRQTQTNQHHRVAKDTDIVIASLIVRDSDGKEHKKF
VVMKNKKRHIVRQPKPRTKVHAWWG Run BLAST on NCBI transcript from alignment at sc0000252:226383..228133+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016793 ID=TCONS_00016793|Name=TCONS_00016793|organism=Clytia hemisphaerica|type=transcript|length=1751bp|location=Sequence derived from alignment at sc0000252:226383..228133+ (Clytia hemisphaerica)
TTTCTCTCGTCCACCCGAACCGTATATAAAGAGAGAAGCATTTGGTAGGT
GGTTCAAATCAAATCATTACACAAACATTGAACAAAGTTTCAATATCTCT
CTCAAGAAAAATATTACCGTCTGTTATTTTACAAAACAAGATTCTCATTC
GAAGATTGATTTGGGGGTATTTCACAAAACAGTTATCTTTTGGTGAAAGG
AGTTTGAGCACCACTTGTGGTTATTGAAAAGCATAAAGAAAGAGCATCGA
ATTACATTGTGTCAACACTACTACTGCTTTGCTGTGTTTTATAAACATTT
TGACAACCTCTTCATTCGCTTGCATTCCTTCGCTTCATTTGGTGAAAGCA
CATCGAAGAGTGAAGACGCACGCACACTACGGAAATTTCGCTTCAACTTT
ATACCATGAACGCTNTACATTGAAGAGTGAAGACGCACGCGCACTACGGA
AATTTCGCTTCAACTTTATACCATGAACGCTTGCTGATAAATCACTTTCC
TTTATCGAGATCagaaatcaacttttattttgtaatttatATCGAAACTT
TTACTTATTGATATATACACGTAAAAATGGAATTGAGGTGTACGTTATTC
CAATGTTTTTACGTATTGTTAACGCTACAAGAGACCTTTACGTTATATTT
ACCGTCACGTTATCGGCGCTTCCCGTTACGCCATTTGGTACATCCGTCTG
TGAATATGGTCGACGAACTTTACGAATCTACGTTAGAATATTACGGAAGT
GACCGTCGCACACATACAGTATCCCGTGAcgaaaaacaaacaggagaaaA
CTTTTTACGAGACACTCTAAGCAAAAATAAAGTCGAGAAAAACACATTAA
CTTTTACGTCATTATCAACGGCGTCAACCAAAAAGACGACGACAACGACG
ACGACATCAAAACTTGACGTACGTCAAACGCAAACTAATCAACATCATCG
TGTAGCTAAAGACACTGATATTGTTATTGCGAGTTTGATCGTAAGAGACA
GTGACGGCAAAGAACATAAAAAGTTTGTAGTCATGAAAAACAAGAAGCGA
CATATCGTACGACAACCAAAACCAAGGACTAAAGTTCACGCTTGGTGGGG
TTGATTCATCTTCCGCTCCTCGGGTTTTTTAGGTAGTTgttttcaaatta
gttttttgatttttttattaattggctttttttatttaaagcgGTGGCAA
TATGTATTGATAATTAACCGGGTTTGCTTTGAGAAGTTCGACTCTAGTCG
GATTCCTTccttttgaaagtatttttttcaaattaataaaAGAATTCAGA
GTTACATACATTTAACCGAGGAGTGATGAAAACATTTCTACTTAATTAAA
TTAGCCTTTTCTATGTATGTCTATTTAAACTGATGTATGTCTACAAAAAG
ACATGCTAATGAAAAGTCATGTAATGTCAACATGACGCGAATTTGTTATA
CAAgaaaaaatacctcaaaaatGAAGTCCTTCCTTGCATTGATAGAGGCT
GGCTCTCTAAAATGCAATCTATAATTATTGAACACCCGGACTGGACCGCC
CATTTAAAACTTTGCGCCCGCtttcatttgctttttaattactttttttt
gttaTGCCCTTAAAACAGAGAGATTTAGTAGTTAGATTTTCTAAAAAGAA
CTTATTTTATGTAAAATATTAAAGtattaaaagaaagaaatacctttata
tattattttattattctatTATTGTGAATACATGTTTATAAGTAAATAAA
T Coding sequence (CDS) from alignment at sc0000252:226383..228133+ >TCONS_00016793 ID=TCONS_00016793|Name=TCONS_00016793|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0000252:226383..228133+ (Clytia hemisphaerica)
ATGGAATTGAGGTGTACGTTATTCCAATGTTTTTACGTATTGTTAACGCT
ACAAGAGACCTTTACGTTATATTTACCGTCACGTTATCGGCGCTTCCCGT
TACGCCATTTGGTACATCCGTCTGTGAATATGGTCGACGAACTTTACGAA
TCTACGTTAGAATATTACGGAAGTGACCGTCGCACACATACAGTATCCCG
TGAcgaaaaacaaacaggagaaaACTTTTTACGAGACACTCTAAGCAAAA
ATAAAGTCGAGAAAAACACATTAACTTTTACGTCATTATCAACGGCGTCA
ACCAAAAAGACGACGACAACGACGACGACATCAAAACTTGACGTACGTCA
AACGCAAACTAATCAACATCATCGTGTAGCTAAAGACACTGATATTGTTA
TTGCGAGTTTGATCGTAAGAGACAGTGACGGCAAAGAACATAAAAAGTTT
GTAGTCATGAAAAACAAGAAGCGACATATCGTACGACAACCAAAACCAAG
GACTAAAGTTCACGCTTGGTGGGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016793-exon-sc0000252-1491911889:226383..226733 | TCONS_00016793-exon-sc0000252-1491911889:226383..226733 | Clytia hemisphaerica | exon |
| TCONS_00016793-exon-sc0000252-1510915933:226383..226733 | TCONS_00016793-exon-sc0000252-1510915933:226383..226733 | Clytia hemisphaerica | exon |
| TCONS_00016793-exon-sc0000252-1575043694:226383..226733 | TCONS_00016793-exon-sc0000252-1575043694:226383..226733 | Clytia hemisphaerica | exon |
| TCONS_00016793-exon-sc0000252-1491911889:226801..228133 | TCONS_00016793-exon-sc0000252-1491911889:226801..228133 | Clytia hemisphaerica | exon |
| TCONS_00016793-exon-sc0000252-1510915933:226801..228133 | TCONS_00016793-exon-sc0000252-1510915933:226801..228133 | Clytia hemisphaerica | exon |
| TCONS_00016793-exon-sc0000252-1575043694:226801..228133 | TCONS_00016793-exon-sc0000252-1575043694:226801..228133 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000252 | supercontig | sc0000252:226383..228133 + |
Blast
The following BLAST results are available for this feature:
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