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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016782 ID=TCONS_00016782|Name=TCONS_00016782|organism=Clytia hemisphaerica|type=transcript|length=1236bp
CCGAAGAGGAGCAAAGAAAGGCAAACGAGCGAAACGTGAAAGAACATATC
AAGAAGCTTGAAAATTCGGAAGATTTTGATAAGATGTGGTGTACCGAACT
TACCAGAGAGAATCCAGAGACCATAGAAAAATATCTCAGAATTCAAGATG
CAGTAAAGAAAGCGATCAACCAAGGACACCGTTTGTTTCCAAAGATTACG
AAGATAGAAGAGGTGCGCAATTTGAAAGTACATGCTAAATTTCTTGAGAA
GTCTCTTCATCTATATGAAAACGAAATCAAATCCGAATCAAAATTATTCT
TTCATGGTGTAAACGATACCATGCTTGAAAGTATACTGAAGGATGGTTTT
ACATTACCAGATGAAGGCAGGAGTTACGGTGCTGGTATATATTTGACAAG
CGATTCTACGCAGTCGCGAAATGAATCGCAAAGTGACCAATCAGGAAAGA
TGCTTTACTGTCAAGTTCATCTTGGCAGATCTTGGACTGCTAAAGAAGAA
TCGCCTGATTTCAATGCCGAGAGCTTACGAAAACTGAAGAAAGATTCAGT
GTTCGTCCCGCGATCCACCAAAGAAGAGGGCGGTGAATCTCTCTCAGATC
AGTACATTGTTTTTAATCCAGACCAAGTGCTTCCAAACTACGTCATCAGT
TATGATTTGGAATTCCAGCCCTCCTTTATAGAAGTCTTTGGTCCTGATTT
CGCGACGAGCAAAAAGACGATATTGCCGAAACGAGAGTTCAACCCTGATG
ATGTATTGCAGAAGCATTTTAAGTTCGTAGAAGCTCGCTTTTTGAACATG
TTGAATAAAGTCCGCAAAACAAATGTTTACGAAATCACTAAAATTGACTT
TTACGAGAATCCAGCTTTGAAGGAAAGATTTCTTGGAAAACAACGAGAGT
TTGAGGATAAATATCCAAACTCATCCGAGGCTGAACCAATTTACGGATTC
CATGGAACAAATAAAAGCGACGTTGTTTGTGAGATCATGAACAACAATTT
CAAAGCAAGTACACAAGGCAAATTTGGCGCTGGTGTGTATTTCTCGGAAC
AACCTGACTACACGTTTAACTACGGTGGTAAAAACAACCTTATATTAGCA
CGAATCCTTCCTGGAAAGACTAAAGAGTGTAATTATGTGGCAATGAACAG
TGATTTGTGTACTGAAGGGTATGAGTCACATGGTGCATTCAAAAATGATG
ATGGTACTTTTAAAGAAGTTGTTATTTTTGATACTG Run BLAST on NCBI transcript from alignment at sc0000252:63559..66380+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016782 ID=TCONS_00016782|Name=TCONS_00016782|organism=Clytia hemisphaerica|type=transcript|length=2822bp|location=Sequence derived from alignment at sc0000252:63559..66380+ (Clytia hemisphaerica)
CCGAAGAGGAGCAAAGAAAGGCAAACGAGCGAAACGTAAGCTTTTCATTC
ACGCTTTGTCTGATCGTTTGTTGTGATTGATTCGctcttaataaaaaaaa
taaacggACTTTGATCTGGAAAAAAACGCTCATTTTCCTCACATTCCCCT
CTCTTTTCATGGTTTTAATATGAGTATTCCTAATCGTTCTATTTTTGTTT
GTTGCTCTTTCTTTCGTGACTTCTTTGGGTGTATTCACACTGTCGCTCTA
AAGAAATATGGGAACAAAGAAttgcacgatcttctcctttgtcttttatt
ATCTAAATTTGCACGATCGTGTGATCGTGTTTGAAGGCAAACTTCAAGCC
GAAAAAACACGATTTTGTTTTGATGGTAAAACTGGGGGAGGGGCACTCGT
CCttaaaacgaccatacgttcggcccaaaaaaTAAGCTACGAACTTTGAC
ACCCTAACAGTGTTTAAACACGTTTAGGTCATtagcttgaaactttcagt
GTGAATACACCCCAGGTCCTCCCTCTCTCAAAATTTATTACTCCTTTATC
GACTGTTATCACCAAGAAACTtagataaaagttttttaaagttcttAACC
CCGTTCCTAAACCCGTCTACGTATTTCCAATTCTAAAATCTCAAGTTCAG
ATAAATGTGTTATCTGAATCTATTTTTATGAAGTTTCTGTCTATGCTATG
TTTGCTTTTGTTCTCACAGGTGAAAGAACATATCAAGAAGCTTGAAAATT
CGGAAGATTTTGATAAGATGTGGTGTACCGAACTTACCAGAGAGAATCCA
GAGACCATAGAAAAATATCTCAGAATTCAAGATGCAGTAAAGAAAGCGAT
CAACCAAGGACACCGTTTGTTTCCAAAGATTACGAAGATAGAAGAGGTGC
GCAATTTGAAAGTACATGCTAAATTTCTTGAGAAGTCTCTTCATCTATAT
GAAAACGAAATCAAATCCGAATCAAAATTATTCTTTCATGGTGTAAACGA
TACCATGCTTGAAAGTATACTGAAGGATGGTTTTACATTACCAGATGAAG
GCAGGAGTTACGGTGCTGGTATATATTTGACAAGCGATTCTACGCAGTCG
CGAAATGAATCGCAAAGTGACCAATCAGGAAAGATGCTTTACTGTCAAGT
TCATCTTGGCAGATCTTGGACTGCTAAAGAAGAATCGCCTGATTTCAATG
CCGAGAGCTTACGAAAACTGAAGAAAGATTCAGTGTTCGTCCCGCGATCC
ACCAAAGAAGAGGGCGGTGAATCTCTCTCAGATCAGTACATTGTTTTTAA
TCCAGACCAAGTGCTTCCAAACTACGTCATCAGTTATGATTTGGAATTCC
AGCCCTCCTTTATAGAAGTCTTTGGTCCTGATTTCGCGACGAGCAAAAAG
ACGATATTGCCGAAACGAGAGTTCAACCCTGATGATGTATTGCAGAAGCA
TTTTAAGTTCGTAGAAGCTCGCTTTTTGAACATGTTGAATAAAGTCCGCA
AAACAAATGTTTACGAAATCACTAAAATTGACTTTTACGAGAATCCAGCT
TTGAAGGAAAGATTTCTTGGAAAACAACGAGAGTTTGAGGTAAAATAGTT
TTCGTTTTACAATGATCCTTTTTAATCTATACGTTGTGAAAATAGAGGGC
TGTACAGTCAGAGTACAGTGGGcctttcgagaaaaaaaaccgtttgttgg
ggaggtcattttttttgTTCCAAGAGTTTGATAGAAACCCCAGTCGGAAT
TCTATGGAATTTTcaaaaccttgtaaaaactaaGAATTCTTGAGGAATTT
AAATCTAACAGTACTTGAAAATTCAGGGggtctgattattttcaaccaat
atcttttgaagattttgaccTCTTCAACAAGGTGTGTACGGGGGGCTGGA
AGTGATGGATTTGAccttatttttggattttggccTCTAAAGGTTTTTTC
TTTCGTAATTTTTACTGCAGTGTGTATAAGATGTGACATACAAACTTTAT
AAACGGGACTGGAATAGTTTTGTGGAACGgaactttttgtctttttcagt
CCAGATCCCTAGTGtgaattaccttatcggccaaaacttagtcggctcta
agtgactaaattttggcttggtgactaaaattaagctttccttattttcc
agtattttaagctttctcctattttccatctgcctgtaaatttagaaatg
gcccaaatttttagtcggtcttaattattagtcggcccttagttactaaa
ttttgacgaggtgacaaaaattagggccgactaataattaaggccgacta
aaattaaggccgactaagttttggccgataaggtataggttcccaatgca
aaaaaaattaaattgaaggATACAACAATCTAAGGAAGGGATTATTTGAA
CCGGGATTCCTTTCAGCATTGACACGTTATGTGACTACATGGTCATATTG
CTGCAAATGAAAATTCTTTCCACTTTCTTGTTCTTATCTAGGATAAATAT
CCAAACTCATCCGAGGCTGAACCAATTTACGGATTCCATGGAACAAATAA
AAGCGACGTTGTTTGTGAGATCATGAACAACAATTTCAAAGCAAGTACAC
AAGGCAAATTTGGCGCTGGTGTGTATTTCTCGGAACAACCTGACTACACG
TTTAACTACGGTGGTAAAAACAACCTTATATTAGCACGAATCCTTCCTGG
AAAGACTAAAGAGTGTAATTATGTGGCAATGAACAGTGATTTGTGTACTG
AAGGGTATGAGTCACATGGTGCATTCAAAAATGATGATGGTACTTTTAAA
GAAGTTGTTATTTTTGATACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016782-exon-sc0000252-1491911889:63559..63593 | TCONS_00016782-exon-sc0000252-1491911889:63559..63593 | Clytia hemisphaerica | exon |
| TCONS_00016782-exon-sc0000252-1510915933:63559..63593 | TCONS_00016782-exon-sc0000252-1510915933:63559..63593 | Clytia hemisphaerica | exon |
| TCONS_00016782-exon-sc0000252-1575043694:63559..63593 | TCONS_00016782-exon-sc0000252-1575043694:63559..63593 | Clytia hemisphaerica | exon |
| TCONS_00016782-exon-sc0000252-1491911889:64278..65147 | TCONS_00016782-exon-sc0000252-1491911889:64278..65147 | Clytia hemisphaerica | exon |
| TCONS_00016782-exon-sc0000252-1510915933:64278..65147 | TCONS_00016782-exon-sc0000252-1510915933:64278..65147 | Clytia hemisphaerica | exon |
| TCONS_00016782-exon-sc0000252-1575043694:64278..65147 | TCONS_00016782-exon-sc0000252-1575043694:64278..65147 | Clytia hemisphaerica | exon |
| TCONS_00016782-exon-sc0000252-1491911889:66050..66380 | TCONS_00016782-exon-sc0000252-1491911889:66050..66380 | Clytia hemisphaerica | exon |
| TCONS_00016782-exon-sc0000252-1510915933:66050..66380 | TCONS_00016782-exon-sc0000252-1510915933:66050..66380 | Clytia hemisphaerica | exon |
| TCONS_00016782-exon-sc0000252-1575043694:66050..66380 | TCONS_00016782-exon-sc0000252-1575043694:66050..66380 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000252 | supercontig | sc0000252:63559..66380 + |
Blast
The following BLAST results are available for this feature:
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