TCONS_00016779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016779
Unique NameTCONS_00016779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016779 ID=TCONS_00016779|Name=TCONS_00016779|organism=Clytia hemisphaerica|type=transcript|length=494bp
CAGGCGAACTGTCCCCTCTATGTCGTACACGTGATGAGTAAAACGGCCGC
AAAGAATGTAGCGGACAGTCGACGTAAAGGTTACGTTTGTTTCGGTGAAC
CCATTGCAGCANCAAAGAATGTAGCGGACAGTCGACGTAAAGGTTACGTC
TGTTTCGGTGAACCCATTGCAGCCGGGTTGGGTGTTGATGGAAAGAACTA
TTGGCATCGATGCTGGAGACACGCTGCAGGCTACGTGATGGGGCCACCTT
TACGACCTGATCCAAGCACTCCAGAATACCTGATGGATCTCCTTGCTAAC
GGTGATCTCTCCTGCACAGGAACGGACAACTGTACCTTCAGTGGTAACCA
AAAAGCTTTGGGTAAAGACGATTTCCGTGGAATCCCGAACGGTGTCAACG
gTGTCGAAGATCGTATGTCGGTAATCTGGGAGAAAGGAGTGCATACGGGC
AAAATGGATGCATGTCGATTTGTAGGAGTGACGAGCACAGTGGC
Run BLAST on NCBI

protein sequence of TCONS_00016779-protein

>TCONS_00016779-protein ID=TCONS_00016779-protein|Name=TCONS_00016779-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
QANCPLYVVHVMSKTAAKNVADSRRKGYVCFGEPIAAXKNVADSRRKGYV
CFGEPIAAGLGVDGKNYWHRCWRHAAGYVMGPPLRPDPSTPEYLMDLLAN
GDLSCTGTDNCTFSGNQKALGKDDFRGIPNGVNGVEDRMSVIWEKGVHTG
KMDACRFVGVTSTV
Run BLAST on NCBI

transcript from alignment at sc0000252:40413..42241+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016779 ID=TCONS_00016779|Name=TCONS_00016779|organism=Clytia hemisphaerica|type=transcript|length=1829bp|location=Sequence derived from alignment at sc0000252:40413..42241+ (Clytia hemisphaerica)
CAGGCGAACTGTCCCCTCTATGTCGTACACGTGATGAGTAAAACGGCCGC
AAAGAATGTAGCGGACAGTCGACGTAAAGGTTACGTTTGTTTCGGTGAAC
CCATTGCAGCANCAAAGAATGTAGCGGACAGTCGACGTAAAGGTTACGTC
TGTTTCGGTGAACCCATTGCAGCCGGGTTGGGTGTTGATGGAAAGAACTA
TTGGCATCGATGCTGGAGACACGCTGCAGGTTGGTATTCAATCTAAGTTT
TcgctttctttttaataaaatggtAGTACAAAGGTAACTGAGTTATCTGT
CGTTTTATTGTTCACCATTTTATTCTCTGACAActctttactttttttaa
ccATGCTTTTCGGGTAATGAGTTTGCGACCGTAGTCTAGGTTGAATCGAA
GGCTCCCTTCTTTAGCTGTTTTTCTaaagttgctgagcatcaagcagaga
ggcagcAAGTACTCGTTTGGGATCTCTGGTATAACCCGTCTGGGATCTTT
GGTATAACCCGtctgggggtcgaacccacaaccGAGCGCACTGTGATATA
GCGGAATGCTAGCTCTAGCTTTATGCTATTTTCGAATACAAAGCTTATGT
GAAAGTTCTGTTGATtattaaaaatccaaaatgtacAAGATTGAATTGTA
TTATGTCTTTAATGTTTAGGCTACGTGATGGGGCCACCTTTACGACCTGA
TCCAAGCACTCCAGAATACCTGATGGATCTCCTTGCTAAGTGAGAATCGT
TTTATTGGAACGTGAAAACCATCAATGCTAAgacatttttgtcatttttt
cgtTAAGTTTTTGTAGTACTGTAATTTGAAAAAGCAGTGAAgatcaaata
tcaaatatcacTATCAATCTTCATCTAATTTTTTTCAGCGGTGATCTCTC
CTGCACAGGAACGGACAACTGTACCTTCAGTGGTAACCAAAAAGCTTTGG
GTAAAGACGATTTCCGTGGAATCCCGAACGGTGTCAACGGTGAGAATTTG
CATTTTCCATCCATCTCATTGCTGAAATACTTGTCCGTTTTGAGCGAACA
TTATGCTTTTGCCAGAAAGGAACATATTATTGTCTCCCTGGGCCTTGTTG
AGCCGAGTCTTGAAAACAgttttaacaagatttcaaGGCTTAATAGTACT
CTTACTTAAGGTCATTTTagcattctttattttttatcaggTGTCGAAGA
TCGTATGTCGGTAATCTGGGAGAAAGGAGTGGTAAGGATTCCCTATTTCT
TTTTCGCTTAAACGAACTCTTAAAGGCTAAACAAATTTCAACATCTCCTT
AGCCTTGAGTGATGATTTTCGAATATAAAATCTATAGAAGatataaattg
taaaaatgccTCGTTCTACGACCCTTTGGATTAGGTTACCCTATTAAAAG
AGGGCTTGAAAAGCGTAAAATTGAGCAGCAAAATATAGCGTCCTGAAGCG
GCAAACAGATTGAAGGAAGAACAGGTAGATAGAAGTAAGACTGACAGACA
AAAAAAAGAGCTAACTGATGTTGAAGAAAGCTGAGAGTTCAAGTTTCAAA
AGAAAGTCGAGCAGAGTGGAAGAAATCATTGTAAAATGTTTGCTGGTAAA
TAATATTGTTTAGTTTCTGATGaagaaataaattttatttaatattataC
AAATATGTAGTAAATTTTCCACGAAGAAGGTTTagagatttttgttttta
taaccACTATAGGAGCTAAAGTTTTTAAAACCCGTTACGCCTTACTTTCA
CTACACCTACCATCCTTGCATTTCAGCATACGGGCAAAATGGATGCATGT
CGATTTGTAGGAGTGACGAGCACAGTGGC

Coding sequence (CDS) from alignment at sc0000252:40413..42241+

>TCONS_00016779 ID=TCONS_00016779|Name=TCONS_00016779|organism=Clytia hemisphaerica|type=CDS|length=2460bp|location=Sequence derived from alignment at sc0000252:40413..42241+ (Clytia hemisphaerica)
CAGGCGAACTGTCCCCTCTATGTCGTACACGTGATGAGTAAAACGGCCGC
AAAGAATGTAGCGGACAGTCGACGTAAAGGTTACGTTTGTTTCGGTGAAC
CCATTGCAGCANCAAAGAATGTAGCGGACAGTCGACGTAAAGGTTACGTC
TGTTTCGGTGAACCCATTGCAGCCGGGTTGGGTGTTGATGGAAAGAACTA
TTGGCATCGATGCTGGAGACACGCTGCAGGCTACGTGATGGGGCCACCTT
TACGACCTGATCCAAGCACTCCAGAATACCTGATGGATCTCCTTGCTAAC
GGTGATCTCTCCTGCACAGGAACGGACAACTGTACCTTCAGTGGTAACCA
AAAAGCTTTGGGTAAAGACGATTTCCGTGGAATCCCGAACGGTGTCAACG
gTGTCGAAGATCGTATGTCGGTAATCTGGGAGAAAGGAGTGCATACGGGC
AAAATGGATGCATGTCGATTTGTAGGAGTGACGAGCACAGTGCAGGCGAA
CTGTCCCCTCTATGTCGTACACGTGATGAGTAAAACGGCCGCAAAGAATG
TAGCGGACAGTCGACGTAAAGGTTACGTTTGTTTCGGTGAACCCATTGCA
GCANCAAAGAATGTAGCGGACAGTCGACGTAAAGGTTACGTCTGTTTCGG
TGAACCCATTGCAGCCGGGTTGGGTGTTGATGGAAAGAACTATTGGCATC
GATGCTGGAGACACGCTGCAGGCTACGTGATGGGGCCACCTTTACGACCT
GATCCAAGCACTCCAGAATACCTGATGGATCTCCTTGCTAACGGTGATCT
CTCCTGCACAGGAACGGACAACTGTACCTTCAGTGGTAACCAAAAAGCTT
TGGGTAAAGACGATTTCCGTGGAATCCCGAACGGTGTCAACGgTGTCGAA
GATCGTATGTCGGTAATCTGGGAGAAAGGAGTGCATACGGGCAAAATGGA
TGCATGTCGATTTGTAGGAGTGACGAGCACAGTGCAGGCGAACTGTCCCC
TCTATGTCGTACACGTGATGAGTAAAACGGCCGCAAAGAATGTAGCGGAC
AGTCGACGTAAAGGTTACGTTTGTTTCGGTGAACCCATTGCAGCANCAAA
GAATGTAGCGGACAGTCGACGTAAAGGTTACGTCTGTTTCGGTGAACCCA
TTGCAGCCGGGTTGGGTGTTGATGGAAAGAACTATTGGCATCGATGCTGG
AGACACGCTGCAGGCTACGTGATGGGGCCACCTTTACGACCTGATCCAAG
CACTCCAGAATACCTGATGGATCTCCTTGCTAACGGTGATCTCTCCTGCA
CAGGAACGGACAACTGTACCTTCAGTGGTAACCAAAAAGCTTTGGGTAAA
GACGATTTCCGTGGAATCCCGAACGGTGTCAACGgTGTCGAAGATCGTAT
GTCGGTAATCTGGGAGAAAGGAGTGCATACGGGCAAAATGGATGCATGTC
GATTTGTAGGAGTGACGAGCACAGTGCAGGCGAACTGTCCCCTCTATGTC
GTACACGTGATGAGTAAAACGGCCGCAAAGAATGTAGCGGACAGTCGACG
TAAAGGTTACGTTTGTTTCGGTGAACCCATTGCAGCANCAAAGAATGTAG
CGGACAGTCGACGTAAAGGTTACGTCTGTTTCGGTGAACCCATTGCAGCC
GGGTTGGGTGTTGATGGAAAGAACTATTGGCATCGATGCTGGAGACACGC
TGCAGGCTACGTGATGGGGCCACCTTTACGACCTGATCCAAGCACTCCAG
AATACCTGATGGATCTCCTTGCTAACGGTGATCTCTCCTGCACAGGAACG
GACAACTGTACCTTCAGTGGTAACCAAAAAGCTTTGGGTAAAGACGATTT
CCGTGGAATCCCGAACGGTGTCAACGgTGTCGAAGATCGTATGTCGGTAA
TCTGGGAGAAAGGAGTGCATACGGGCAAAATGGATGCATGTCGATTTGTA
GGAGTGACGAGCACAGTGCAGGCGAACTGTCCCCTCTATGTCGTACACGT
GATGAGTAAAACGGCCGCAAAGAATGTAGCGGACAGTCGACGTAAAGGTT
ACGTTTGTTTCGGTGAACCCATTGCAGCANCAAAGAATGTAGCGGACAGT
CGACGTAAAGGTTACGTCTGTTTCGGTGAACCCATTGCAGCCGGGTTGGG
TGTTGATGGAAAGAACTATTGGCATCGATGCTGGAGACACGCTGCAGGCT
ACGTGATGGGGCCACCTTTACGACCTGATCCAAGCACTCCAGAATACCTG
ATGGATCTCCTTGCTAACGGTGATCTCTCCTGCACAGGAACGGACAACTG
TACCTTCAGTGGTAACCAAAAAGCTTTGGGTAAAGACGATTTCCGTGGAA
TCCCGAACGGTGTCAACGgTGTCGAAGATCGTATGTCGGTAATCTGGGAG
AAAGGAGTGCATACGGGCAAAATGGATGCATGTCGATTTGTAGGAGTGAC
GAGCACAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009392XLOC_009392Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016779-proteinTCONS_00016779-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016779-exon-sc0000252-1491911889:40413..40641TCONS_00016779-exon-sc0000252-1491911889:40413..40641Clytia hemisphaericaexon
TCONS_00016779-exon-sc0000252-1510915933:40413..40641TCONS_00016779-exon-sc0000252-1510915933:40413..40641Clytia hemisphaericaexon
TCONS_00016779-exon-sc0000252-1575043694:40413..40641TCONS_00016779-exon-sc0000252-1575043694:40413..40641Clytia hemisphaericaexon
TCONS_00016779-exon-sc0000252-1491911889:41082..41151TCONS_00016779-exon-sc0000252-1491911889:41082..41151Clytia hemisphaericaexon
TCONS_00016779-exon-sc0000252-1510915933:41082..41151TCONS_00016779-exon-sc0000252-1510915933:41082..41151Clytia hemisphaericaexon
TCONS_00016779-exon-sc0000252-1575043694:41082..41151TCONS_00016779-exon-sc0000252-1575043694:41082..41151Clytia hemisphaericaexon
TCONS_00016779-exon-sc0000252-1491911889:41301..41401TCONS_00016779-exon-sc0000252-1491911889:41301..41401Clytia hemisphaericaexon
TCONS_00016779-exon-sc0000252-1510915933:41301..41401TCONS_00016779-exon-sc0000252-1510915933:41301..41401Clytia hemisphaericaexon
TCONS_00016779-exon-sc0000252-1575043694:41301..41401TCONS_00016779-exon-sc0000252-1575043694:41301..41401Clytia hemisphaericaexon
TCONS_00016779-exon-sc0000252-1491911889:41603..41643TCONS_00016779-exon-sc0000252-1491911889:41603..41643Clytia hemisphaericaexon
TCONS_00016779-exon-sc0000252-1510915933:41603..41643TCONS_00016779-exon-sc0000252-1510915933:41603..41643Clytia hemisphaericaexon
TCONS_00016779-exon-sc0000252-1575043694:41603..41643TCONS_00016779-exon-sc0000252-1575043694:41603..41643Clytia hemisphaericaexon
TCONS_00016779-exon-sc0000252-1491911889:42189..42241TCONS_00016779-exon-sc0000252-1491911889:42189..42241Clytia hemisphaericaexon
TCONS_00016779-exon-sc0000252-1510915933:42189..42241TCONS_00016779-exon-sc0000252-1510915933:42189..42241Clytia hemisphaericaexon
TCONS_00016779-exon-sc0000252-1575043694:42189..42241TCONS_00016779-exon-sc0000252-1575043694:42189..42241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:40413..42241 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
89.1077	92.8604	87.3608	95.5782	7.56957	5.23309	14.1396	15.442	49.6194	43.957	40.8743	59.4714	107.221	110.961	89.4798	72.7705	81.9381	74.0285	58.0752	65.6517	57.1842	65.7732	63.2729	63.4718	29.2476	23.2973	89.1193	93.2822	34.7982	34.7282
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032466Metal_Hydrolase
Blast
[Close]
BLAST of TCONS_00016779 vs. Swiss-Prot (Human)
Match: DPYS (Dihydropyrimidinase OS=Homo sapiens GN=DPYS PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.245e-68
Identity = 106/161 (65.84%), Postives = 121/161 (75.16%), Query Frame = 1 
Query:    7 NCPLYVVHVMSKTAAKNVADSRRKGYVCFGEPIAAXKNVADSRRKGYVCFGEPIAAGLGVDGKNYWHRCWRHAAGYVMGPPLRPDPSTPEYLMDLLANGDLSCTGTDNCTFSGNQKALGKDDFRGIPNGVNGVEDRMSVIWEKGVHTGKMDACRFVGVTST 489
            NCPLY+VHVMSK+AAK +AD+RR                      G V +GEPIAA LG DG +YW++ W HAA +VMGPPLRPDPSTP++LM+LLAN DL+ TGTDNCTF+  QKALGKDDF  IPNGVNGVEDRMSVIWEKGVH+GKMD  RFV VTST
Sbjct:  241 NCPLYIVHVMSKSAAKVIADARRD---------------------GKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTST 380
The following BLAST results are available for this feature:
BLAST of TCONS_00016779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPYS5.245e-6865.84Dihydropyrimidinase OS=Homo sapiens GN=DPYS PE=1 S... [more]
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