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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016767 ID=TCONS_00016767|Name=TCONS_00016767|organism=Clytia hemisphaerica|type=transcript|length=1141bp
CTTTGCATGACGAGTTGGTCGAAATGTGGTCAATGAGCGACACTCCTTTA
CGTGATGGAGATTTGACATGCTGGTTGAGGTCGAACGAACGAAGGGTTTC
GAGATACGAATCTTTTATTTGAGAGTTCGATCATAGATCGATATTAAAAG
CACCCGTTATTACCANTCTTTTAGCCAGGTTTCGGTGAGTGTTACCGCAT
CGAATTTGTATTTATTAACAAAGAGCACAAATTCATCGAACGTGGATACC
ATGGACTGAGTATTGATGTGAGCGATGCTAAACAAATGTCTATTTTCATT
TAGTTTTTCGAATTGTAGATCTTGGAATTGTTCTTGTTGGATCTCTTGAT
CAATAAGCGAAAGATCTCGTACGTTGCAGAATGGTAATACAGATGGTAAG
CATTGGGAACACATCATACCAGTGATTGTCGAATTGCGCTTCGGGTCGAC
GCATCGAAGATGGGTCTTTTGTTGGCAGCGACAGCAGGTCACAAGTTTAC
TGTTTTTGCGTACTGTTTTGGCACACAAAGTACATAGAGATGGCCCAGGA
TTGGATTCAATATCGCCTGACAAAAGGATATCGGTACCTGAGATGTTAAG
CTGGAACGAAGCAATATGGTTGGCATACAAGCGGATCGGTGCACAGAATC
TATGTTTGTTGTTATTTTTCGAAGCAGCAAATCTCGATCTGTTGGGCGAA
TTTTCCGATCTGCGCGACAAAAAATATACCAGGAGAAGCAGCGTGACAAT
CTTCTTCTTTTGATGCATATTTGAGCGCTCTAAACTGCAAATTCGTCAAA
CATTTAGCGAAAAACTtcttgatttttactttttgaacgTCAGTTGCAAA
AAAACGTCAGTTCGTTACAGAAGCCGTTGCAGTtctaggaccttaggatc
tcaggatctaaaaggtaaaaaatgttccaatagggctgggaatatagcct
ggaagccacttaacccctcccaaatcgaaaaatccaatgaagcaaagttg
AAGTACTGAAACTGCTATTCTCGCCCAACCTTTAAATTccgaaaaacgtt
aaaataaaaTTGCCCCAATCTATTTCGGAGCTGATTGTAGAAGTTCTGGT
ATACTGAATAActtttttctaacttttatatCTAAGCTGAC Run BLAST on NCBI protein sequence of TCONS_00016767-protein >TCONS_00016767-protein ID=TCONS_00016767-protein|Name=TCONS_00016767-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MHQKKKIVTLLLLVYFLSRRSENSPNRSRFAASKNNNKHRFCAPIRLYAN
HIASFQLNISGTDILLSGDIESNPGPSLCTLCAKTVRKNSKLVTCCRCQQ
KTHLRCVDPKRNSTITGMMCSQCLPSVLPFCNVRDLSLIDQEIQQEQFQD
LQFEKLNENRHLFSIAHINTQSMVSTFDEFVLFVNKYKFDAVTLTETWLK
XW Run BLAST on NCBI transcript from alignment at sc0000248:189465..190605 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016767 ID=TCONS_00016767|Name=TCONS_00016767|organism=Clytia hemisphaerica|type=transcript|length=1141bp|location=Sequence derived from alignment at sc0000248:189465..190605 (Clytia hemisphaerica)
GTCAGCTTAGatataaaagttagaaaaaagTTATTCAGTATACCAGAACT
TCTACAATCAGCTCCGAAATAGATTGGGGCAAttttattttaacgttttt
cggAATTTAAAGGTTGGGCGAGAATAGCAGTTTCAGTACTTcaactttgc
ttcattggatttttcgatttgggaggggttaagtggcttccaggctatat
tcccagccctattggaacattttttaccttttagatcctgagatcctaag
gtcctagaACTGCAACGGCTTCTGTAACGAACTGACGTTTTTTTGCAACT
GAcgttcaaaaagtaaaaatcaagaAGTTTTTCGCTAAATGTTTGACGAA
TTTGCAGTTTAGAGCGCTCAAATATGCATCAAAAGAAGAAGATTGTCACG
CTGCTTCTCCTGGTATATTTTTTGTCGCGCAGATCGGAAAATTCGCCCAA
CAGATCGAGATTTGCTGCTTCGAAAAATAACAACAAACATAGATTCTGTG
CACCGATCCGCTTGTATGCCAACCATATTGCTTCGTTCCAGCTTAACATC
TCAGGTACCGATATCCTTTTGTCAGGCGATATTGAATCCAATCCTGGGCC
ATCTCTATGTACTTTGTGTGCCAAAACAGTACGCAAAAACAGTAAACTTG
TGACCTGCTGTCGCTGCCAACAAAAGACCCATCTTCGATGCGTCGACCCG
AAGCGCAATTCGACAATCACTGGTATGATGTGTTCCCAATGCTTACCATC
TGTATTACCATTCTGCAACGTACGAGATCTTTCGCTTATTGATCAAGAGA
TCCAACAAGAACAATTCCAAGATCTACAATTCGAAAAACTAAATGAAAAT
AGACATTTGTTTAGCATCGCTCACATCAATACTCAGTCCATGGTATCCAC
GTTCGATGAATTTGTGCTCTTTGTTAATAAATACAAATTCGATGCGGTAA
CACTCACCGAAACCTGGCTAAAAGANTGGTAATAACGGGTGCTTTTAATA
TCGATCTATGATCGAACTCTCAAATAAAAGATTCGTATCTCGAAACCCTT
CGTTCGTTCGACCTCAACCAGCATGTCAAATCTCCATCACGTAAAGGAGT
GTCGCTCATTGACCACATTTCGACCAACTCGTCATGCAAAG Coding sequence (CDS) from alignment at sc0000248:189465..190605 >TCONS_00016767 ID=TCONS_00016767|Name=TCONS_00016767|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at sc0000248:189465..190605 (Clytia hemisphaerica)
ATGCATCAAAAGAAGAAGATTGTCACGCTGCTTCTCCTGGTATATTTTTT
GTCGCGCAGATCGGAAAATTCGCCCAACAGATCGAGATTTGCTGCTTCGA
AAAATAACAACAAACATAGATTCTGTGCACCGATCCGCTTGTATGCCAAC
CATATTGCTTCGTTCCAGCTTAACATCTCAGGTACCGATATCCTTTTGTC
AGGCGATATTGAATCCAATCCTGGGCCATCTCTATGTACTTTGTGTGCCA
AAACAGTACGCAAAAACAGTAAACTTGTGACCTGCTGTCGCTGCCAACAA
AAGACCCATCTTCGATGCGTCGACCCGAAGCGCAATTCGACAATCACTGG
TATGATGTGTTCCCAATGCTTACCATCTGTATTACCATTCTGCAACGTAC
GAGATCTTTCGCTTATTGATCAAGAGATCCAACAAGAACAATTCCAAGAT
CTACAATTCGAAAAACTAAATGAAAATAGACATTTGTTTAGCATCGCTCA
CATCAATACTCAGTCCATGGTATCCACGTTCGATGAATTTGTGCTCTTTG
TTAATAAATACAAATTCGATGCGGTAACACTCACCGAAACCTGGCTAAAA
GANTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016767-exon-sc0000248-1491911889:189465..190605 | TCONS_00016767-exon-sc0000248-1491911889:189465..190605 | Clytia hemisphaerica | exon |
| TCONS_00016767-exon-sc0000248-1510915933:189465..190605 | TCONS_00016767-exon-sc0000248-1510915933:189465..190605 | Clytia hemisphaerica | exon |
| TCONS_00016767-exon-sc0000248-1575043694:189465..190605 | TCONS_00016767-exon-sc0000248-1575043694:189465..190605 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248 | supercontig | sc0000248:189465..190605 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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