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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016765 ID=TCONS_00016765|Name=TCONS_00016765|organism=Clytia hemisphaerica|type=transcript|length=1072bp
CTTTGTTTAGGTTGTCAGAATATAGAGCGGTCtatcaaaagaaaacaaaa
aatttactcaagagaattaaatcaaaaagtagCTATTTCCTTAATCATGT
TTTGGTGAATTTAAACTGAAGCACAACGCGAAACTGGATTTATAGGTCAA
TCTTGAGTTAAACTTTGAATTATCATTGACCACCAAGCCTTCTTCAAAAA
TGATGAAACTTATGAGAGTTTTCTTCCTACCGTTGGTATTACAACTAAGC
TTTGTTGAAGCTGGGCTAACCAAAGAACGACGCGAAGGCATCAACGCTTT
AATAGCAAGTCTACGTGAGCAAAGAAAGAGTCAACATGAAACACTGAAAG
CTCTTGATCTGATGGTGATGGACAGAGATAGTGAAGAAAGGAAAGTTGAG
GTTTACCGACGGTTGCTGAAAAAGGTTATGGAGCTTTTAGTGCACAGTGG
ACACTTGGATGTTTTGAGTGGTGACCACAATAAGGAATCTATGTTCCATT
ATCATAAGCACAATCCCGCAGACGAGGAGGTTGCCGACACTGTTAGGAAA
GAAGCCCAACATAATTTAGTTGGTAGAAAAACTCTAAACGATGACATTCA
GAGAAGGCAAGGAGGAATGCAAACAACTAGGGATGGTCAAACCAACTTGG
TGAAAACTAACAGAAAAGAAGGGACGAATTTCAAACGTGATGAAGCCCTT
GGTGATGCCTCCCCATTGTTGGATACGAAAGTGGAGGATAAAATATCAAA
CACCTTGAAAGACCTGGATGATGATCAACTTCAAGAGATGGAATCGATTT
TAGATGAAGtgtacaatattttgaaaactgcTAAACGTAAATTGTAAAAA
GAATTTACACCAAAAGCAGTTTTGAAGCCGCTTGGAGTCAGAGAGCCTTA
TTTTCAATAGACTTTGTtatatctttgattttttttgattgagTAAGACA
TTTTGGATTTTGAATACCTTTTatgagaattaattttggtgaatttggcg
aatttaatttcaatttaagattttaatgaTTATTTTGCTTGCCAAAATTA
GCTACCTAAATatgtaaataat Run BLAST on NCBI protein sequence of TCONS_00016765-protein >TCONS_00016765-protein ID=TCONS_00016765-protein|Name=TCONS_00016765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MMKLMRVFFLPLVLQLSFVEAGLTKERREGINALIASLREQRKSQHETLK
ALDLMVMDRDSEERKVEVYRRLLKKVMELLVHSGHLDVLSGDHNKESMFH
YHKHNPADEEVADTVRKEAQHNLVGRKTLNDDIQRRQGGMQTTRDGQTNL
VKTNRKEGTNFKRDEALGDASPLLDTKVEDKISNTLKDLDDDQLQEMESI
LDEVYNILKTAKRKL Run BLAST on NCBI transcript from alignment at sc0000248:114651..115722 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016765 ID=TCONS_00016765|Name=TCONS_00016765|organism=Clytia hemisphaerica|type=transcript|length=1072bp|location=Sequence derived from alignment at sc0000248:114651..115722 (Clytia hemisphaerica)
attatttacatATTTAGGTAGCTAATTTTGGCAAGCAAAATAAtcattaa
aatcttaaattgaaattaaattcgccaaattcaccaaaattaattctcat
AAAAGGTATTCAAAATCCAAAATGTCTTActcaatcaaaaaaaatcaaag
atataACAAAGTCTATTGAAAATAAGGCTCTCTGACTCCAAGCGGCTTCA
AAACTGCTTTTGGTGTAAATTCTTTTTACAATTTACGTTTAgcagttttc
aaaatattgtacaCTTCATCTAAAATCGATTCCATCTCTTGAAGTTGATC
ATCATCCAGGTCTTTCAAGGTGTTTGATATTTTATCCTCCACTTTCGTAT
CCAACAATGGGGAGGCATCACCAAGGGCTTCATCACGTTTGAAATTCGTC
CCTTCTTTTCTGTTAGTTTTCACCAAGTTGGTTTGACCATCCCTAGTTGT
TTGCATTCCTCCTTGCCTTCTCTGAATGTCATCGTTTAGAGTTTTTCTAC
CAACTAAATTATGTTGGGCTTCTTTCCTAACAGTGTCGGCAACCTCCTCG
TCTGCGGGATTGTGCTTATGATAATGGAACATAGATTCCTTATTGTGGTC
ACCACTCAAAACATCCAAGTGTCCACTGTGCACTAAAAGCTCCATAACCT
TTTTCAGCAACCGTCGGTAAACCTCAACTTTCCTTTCTTCACTATCTCTG
TCCATCACCATCAGATCAAGAGCTTTCAGTGTTTCATGTTGACTCTTTCT
TTGCTCACGTAGACTTGCTATTAAAGCGTTGATGCCTTCGCGTCGTTCTT
TGGTTAGCCCAGCTTCAACAAAGCTTAGTTGTAATACCAACGGTAGGAAG
AAAACTCTCATAAGTTTCATCATTTTTGAAGAAGGCTTGGTGGTCAATGA
TAATTCAAAGTTTAACTCAAGATTGACCTATAAATCCAGTTTCGCGTTGT
GCTTCAGTTTAAATTCACCAAAACATGATTAAGGAAATAGctactttttg
atttaattctcttgagtaaattttttgttttcttttgataGACCGCTCTA
TATTCTGACAACCTAAACAAAG Coding sequence (CDS) from alignment at sc0000248:114651..115722 >TCONS_00016765 ID=TCONS_00016765|Name=TCONS_00016765|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0000248:114651..115722 (Clytia hemisphaerica)
TTACAATTTACGTTTAgcagttttcaaaatattgtacaCTTCATCTAAAA
TCGATTCCATCTCTTGAAGTTGATCATCATCCAGGTCTTTCAAGGTGTTT
GATATTTTATCCTCCACTTTCGTATCCAACAATGGGGAGGCATCACCAAG
GGCTTCATCACGTTTGAAATTCGTCCCTTCTTTTCTGTTAGTTTTCACCA
AGTTGGTTTGACCATCCCTAGTTGTTTGCATTCCTCCTTGCCTTCTCTGA
ATGTCATCGTTTAGAGTTTTTCTACCAACTAAATTATGTTGGGCTTCTTT
CCTAACAGTGTCGGCAACCTCCTCGTCTGCGGGATTGTGCTTATGATAAT
GGAACATAGATTCCTTATTGTGGTCACCACTCAAAACATCCAAGTGTCCA
CTGTGCACTAAAAGCTCCATAACCTTTTTCAGCAACCGTCGGTAAACCTC
AACTTTCCTTTCTTCACTATCTCTGTCCATCACCATCAGATCAAGAGCTT
TCAGTGTTTCATGTTGACTCTTTCTTTGCTCACGTAGACTTGCTATTAAA
GCGTTGATGCCTTCGCGTCGTTCTTTGGTTAGCCCAGCTTCAACAAAGCT
TAGTTGTAATACCAACGGTAGGAAGAAAACTCTCATAAGTTTCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016765-exon-sc0000248-1491911889:114651..115722 | TCONS_00016765-exon-sc0000248-1491911889:114651..115722 | Clytia hemisphaerica | exon |
| TCONS_00016765-exon-sc0000248-1510915933:114651..115722 | TCONS_00016765-exon-sc0000248-1510915933:114651..115722 | Clytia hemisphaerica | exon |
| TCONS_00016765-exon-sc0000248-1575043694:114651..115722 | TCONS_00016765-exon-sc0000248-1575043694:114651..115722 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248 | supercontig | sc0000248:114651..115722 . |
Blast
The following BLAST results are available for this feature:
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