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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016747 ID=TCONS_00016747|Name=TCONS_00016747|organism=Clytia hemisphaerica|type=transcript|length=3951bpRun BLAST on NCBI protein sequence of TCONS_00016747-protein >TCONS_00016747-protein ID=TCONS_00016747-protein|Name=TCONS_00016747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=776bp MPIATDRLSKLQILKLIQAVNEKDHDKIVKLIDNGIPDLVNFAEPSHGRTRun BLAST on NCBI transcript from alignment at sc0000248:194406..207571- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016747 ID=TCONS_00016747|Name=TCONS_00016747|organism=Clytia hemisphaerica|type=transcript|length=13166bp|location=Sequence derived from alignment at sc0000248:194406..207571- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000248:194406..207571- >TCONS_00016747 ID=TCONS_00016747|Name=TCONS_00016747|organism=Clytia hemisphaerica|type=CDS|length=44289bp|location=Sequence derived from alignment at sc0000248:194406..207571- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016747 vs. Swiss-Prot (Human)
Match: ANKE1 (Ankyrin repeat and EF-hand domain-containing protein 1 OS=Homo sapiens GN=ANKEF1 PE=2 SV=2) HSP 1 Score: 488.034 bits (1255), Expect = 2.744e-154 Identity = 289/777 (37.19%), Postives = 433/777 (55.73%), Query Frame = 2
Query: 65 MPIATDRLSKLQILKLIQAVNEKDHDKIVKLIDNGIPDLVNFAEPSHGRTGLHLAACANDDATIKHLISYGADCDQTDLEGRTPYMKAAEYGHVQALKALLEGALDPDLSLRDLDGNNICNYCLHATKRHQECLNLAIKYGANVHVCDNDGSSLLSKATSEGLD--KAVKTLLNAGVEVNQQNESTGKSALHIACEKGLEECARLLLKFNANPNCYNFKNVSAAHSASANGHLSVLQILSGYGADFNVLDAKRNTPMHLAADKGYGAVCKYLGQRGCLATAKNADGKLARVIAKDN--XXXXXXXXXXXXXXXXXXXPGTQ----VEVVKFYDWMIENKTQLEVDVHDYDTETEGQRSGKIPTQDFISVLRANKSPLNEDKLQSILKPHDPQQSGKIDYELFFTAKKFINKQFLLDXXXXXXXXXXXXXXXXXXXXXIEMPICVKEE--IERQKSGGPLLNYVEKKELLTDFTRFNKDNPPLHPIQDDSVWYCPKSGARFIHINEVIKYNDRESMKAAVKDGLDLDQKDKFYKTPLMMACLEGNLQMARYLVSHGANVNEMDSFKWTALHFACHSGQKDLVELLINNGAQMDTQSINGGTPIMRAIESSKCDVVQFMIDNGAKIQLENKKGSTALDIAFAYADPRIIEIVQKRWDQLPPPIDXXXXXXXXXXXXXXXXXXXXXXXXXVSMPEIRLTKSQQNMKYEDHRETSAVIKAATAIANGASLDKDISYTPKRAWLPEPTTKELLGERQDNRERYGYEVDFVDYQPPFQSHITE 2365
M +A RL LQI K++Q V KD +I KL G P+L+N+ EP +G + LHLA+ +ND + L+ GA D D G TP M+AAE GH +++ L + D+++ D +G + YC+ TKRH C +A+++GA+V+ +G + +A + D T L G N N STG++AL A +G+ E R +L+ N ++ AAH A+ G +L++L Y D ++ NTP+H AA G+ CKY+ QRGC KN D K R +AK+ + + NK +PG + + ++ +DW +E + L D + G I DF+ VL + + ++L +I H+ + G ++ FF +++NK F+L KK KGKKGK + +PICV E R++ GGP +E + +TD +RFN+D+PP HPIQDDSVWY S F +IN + K D S+K A + G+ +D KD +YKTPLM AC GN+ + ++L+ GANVN D+F WT LHFACH+GQ+D+VELL+ +GA +D SIN TP+ RAIES + D V++++D GAK QLEN+KG +A+D+A AYAD RII++++++ D LP P + +K GK P +T + +S T S+ + V+ + I +G + DI++ P+R W PE TT EL+ +R+ RER+ +EVDF D+ PFQ +ITE
Sbjct: 1 MALADKRLENLQIYKVLQCVRNKDKKQIEKLTKLGYPELINYTEPINGLSALHLASVSNDIDMVSFLLDLGAHPDVQDRMGCTPTMRAAELGHELSMEILAKA--KADMTIVDNEGKGVLFYCILPTKRHYRCALIALEHGADVNNSTYEGKPIFLRACEDAHDVKDVCLTFLEKGANPNAINSSTGRTALMEASREGVVEIVRGILERGGEVNAFDNDRHHAAHFAAKGGFFDILKLLFAYNGDVGLISINGNTPLHYAAMGGFADCCKYIAQRGCDLKWKNLDHKTPRAVAKEGGFKAASKEIRRAERIANKLARPGAKNPNPLWALRLHDWSVEREAFLREAFAVLD-----RGDGSISKNDFVMVLEERQDYASSEQLAAIAHLHEKTRGGGVNINEFFKGTRYLNKSFVLGSYGPKKKEKGMGKKGKKGKFVLPLPICVIPEYAFPRRQDGGPPYYMIETYKNVTDSSRFNRDHPPEHPIQDDSVWYIDDSEKVFSNINIITKAGDLASLKKAFESGIPVDMKDNYYKTPLMTACASGNIDVVKFLLEKGANVNATDNFLWTPLHFACHAGQQDIVELLVESGALIDAASINNSTPLNRAIESCRLDTVKYLLDIGAKFQLENRKGHSAMDVAKAYADYRIIDLIKEKLDNLPKPAENQKLKGKTPPILKTEGPEIKKEEELLSSIYGVPTTSEGK-----KVQKGNVVHLNSLITSGYTKKVDITFIPRRIWSPEATTAELIRKRELRRERFTHEVDFDDFMMPFQKNITE 765 The following BLAST results are available for this feature:
BLAST of TCONS_00016747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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