TCONS_00016734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016734
Unique NameTCONS_00016734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016734 ID=TCONS_00016734|Name=TCONS_00016734|organism=Clytia hemisphaerica|type=transcript|length=280bp
tttttagaATACGGTGTGAATTGTATCCTCTTTCAACGAGGTTTATATCC
TATGGAATCGTTCGATCGCAAGATTGCTTACGATGTGCCCGTTTTCGTTT
CTACCAACACTGATTTGAATGATTATCTACACAAGTGCATCGAACAAATG
AAAGATTGGTTAGTAAAGAAGACGATTCAAAGGATTGTATTGGTGATCAC
TTCAGTTGCCAAGAAAGTGGACGTTGAACGTTGGACATTCAACATCGAAT
GTGATAAAACTGCTAATGAAAGCACGTAAG
Run BLAST on NCBI

transcript from alignment at sc0000248:393270..398043+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016734 ID=TCONS_00016734|Name=TCONS_00016734|organism=Clytia hemisphaerica|type=transcript|length=4774bp|location=Sequence derived from alignment at sc0000248:393270..398043+ (Clytia hemisphaerica)
tttttagaATACGGTGTGAATTGGTAAGactttttccattttcatttcat
tgaatCATTATACTTGGTAATTAGTAGTCATTTATCTGATGACTTTGACC
TTTCATGATCTCatcgagtctgctaaatcgcgtgccagcgtgcctacgTG
CCATGCGTGCCTACGTGCCATGCGTGCCTGCGTGCCAAGCATGCCAACGT
GCCTGCGTGCCAAGCATGCCAACGTGCCatggcgtgccagcgtgccaacg
tgccagcatgccatccaaatttggcgtgccatccgaacttcggcgtgcca
tccgaattttggcgtgccatccgaattttggcgtgccatctgaattttgg
cgtgccatccgaattttggcgtgccatccgaattttgggcATTATCACAA
AATATGAGGTGTATACACCAACAATGCTGGCGGTGCAAATGGATATAGAT
TGTCatgcaatgaaaacattaaatgctccaagagagctgtttcagagata
tgaaaatattagtacttttattattattttattatttttatttttatatg
aacagagcattacataactttaaaagttttgaagNATCGATTTCAATCCA
ATAAttaaaaaagtgttttatttgaataccttaaaggaactaATTTGAGC
GAGAACTAAATTTGAGCGAGAACTAAATTTgagcgagaactaatttttag
cgagaactaatttttgcgagcAGCANATCCAATAAttaaaaaagtgtttt
atttgaataccttaaaggaactaATTTGAGCGAGAACTAAATTTGAGCGA
GAACTAAATTTgagcgagaactaatttttagcgagaactaatttttgcga
gcAGCACGATTAGCCTTTTTCTTGACAACTAATTTTGTGGAATTTTGTAG
AACTGCAGTTATCCCAAAATTAGGTTCCTGAAGGTAATTAttaattttaa
atgattttatttatattttataacaATTTATAGCCTAGATACCACTCACT
TGATTTATACTGAAAGAAATATTAGATATTATACACTGTTTGGAAAGCGG
AACTGTCTCAATGAATAATCCTAAGTATTTAACCAATGCGATGAACTCAT
TTTGGggaatattaacaaaattgcAGCCTCGCCAAATCTAGATCTCGTCA
GAATTTTGTTTCCCTGAGGTAATTATTGATTTGTGATTCATTGTGATTTT
AACAGGAGCGATAGCTGAGTGGTAAAGTCAACTgttcgcggttcgaatcc
ccACTTACTTAAATGTTCAGCTCACTGCCTGTAGACCCTAAAAGTTTTAG
GTTACTGGGCTATCCATGTGAAATATCGACTCTTTCCATGTGAGCATTCT
CtctttgcttcttgctccacactATCCAAATTTTATAAATAGTAGAGAAA
GGAATTTGATACCTTGATAATTATCTTGTAGAAGATTCTGTATTTTGATA
TATTATATATTGTATATCATGCAATTTGAATCAATATTACAAttgatatt
catttttttcagaaaaaaaaaattcttttgttgaaaTGGCTCAAAGTACA
GCTCAAGCAAATAAGTCTAAAGCAATCACGCTTAAAGGAAGTGCTGAACT
TATTGGAGAATTtttcggtaagtcattcagtgcGTACAGTCTTTTATTTG
AAACATTCTATCCTTGAAACCATCATACCTCACCTActtttttcgatttc
tttaatGGCACCCACCATGAGGATTTCTTATACCCTATTGTGTAAATTTC
TATTCTCATTCTATTATAAtattttcgcttgtttttcaatttttcttttg
tcttttttttagaATACGGTGTGAATTGGTAAGACTTGTAATTTatccat
tttcattttattgagTCATTATACTTGGTAATTAGTAGTCATTTATCTGA
TGACTTTGACCTTTCATGATCTCatcgagtctgctaaatcgcgtgccagc
gtgcctacgTGCCATGCGTGCCTACGTGCCATGCGTGCCTGCGTGCCAAG
CATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNtggcacgctggcacgccaagaca
gttgacacgaaggcacgcatggcacgctggcacgcttAAAAACCGATGGC
ACgcgtggcacgcgatttagcagactcgatCTCATCGCATCGCATCATGA
CTATAAATTTCTTGCAAATAGACCTATTcaaaaattacgtcacgaacatc
acttgcctcgtatccaaacaattaccatggtgattatgtcccttgaggca
tgattttttttatgaatagaaagtagttttaagaaaacccgctgggagtt
aatcaccatggcaatttttttatttcaaaacgaggcaagtgttgttcgtg
acgtaatttatgaaaaggtctatacccAAACAAAATTGGTTGATTGTAGC
GAAATTTATTGGTTGAATGTTTTTGCATATGAGATAATGTCGTATTTGTG
GAAATCGAAGTATTTTGTAATGGCAGTGAATAAATTGTTCCTGTGTTAAT
CCCAATTTACTGACAGTAATCACAATATTACCAAACCTTTATATTGTTCA
ATAGTATCCTCTTTCAACGAGGTTTATATCCTATGGAATCGTTCGATCGC
AAGATTGCTTACGATGTGCCCGTTTTCGTTTCTACCAACACTGATTTGAA
TGATTATCTACACAAGTGCATCGAACAAATGAAAGGTTTTTGGtactttc
ttattttgatttcaattctttgacAGTTTTATTCTTAGAAAAATGAACTT
CATGGCCTTACCTGGAGATCTACTTTGTCTGGTAGCGGGATGGGAGGGAC
GGGAATAGAGATAATATGGTTTTGCTGCTTCATTAccaggaaaaaaaata
aaaaaaataggcGAGCTAAAAACGAGTGcgttttttttagctgaaaaaaa
attgtgaggTAAAAAAGGGAAGAGCGCTAAAATTTACGATCTGAAGAGCT
TTagaattttaagaaatatatatcccattttttttttttcattaccaGAT
TGGTTAGTAAAGAAGACGATTCAAAGGATTGTATTGGTGATCACTTCAGT
TGCCAAGAAAGTGGACGTTGAACGTTGGACATTCAACATCGAATGTGATA
AAACTGCTAATGAAAGCACGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009357XLOC_009357Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016734-exon-sc0000248-1491911889:393270..393292TCONS_00016734-exon-sc0000248-1491911889:393270..393292Clytia hemisphaericaexon
TCONS_00016734-exon-sc0000248-1510915933:393270..393292TCONS_00016734-exon-sc0000248-1510915933:393270..393292Clytia hemisphaericaexon
TCONS_00016734-exon-sc0000248-1575043694:393270..393292TCONS_00016734-exon-sc0000248-1575043694:393270..393292Clytia hemisphaericaexon
TCONS_00016734-exon-sc0000248-1491911889:397474..397604TCONS_00016734-exon-sc0000248-1491911889:397474..397604Clytia hemisphaericaexon
TCONS_00016734-exon-sc0000248-1510915933:397474..397604TCONS_00016734-exon-sc0000248-1510915933:397474..397604Clytia hemisphaericaexon
TCONS_00016734-exon-sc0000248-1575043694:397474..397604TCONS_00016734-exon-sc0000248-1575043694:397474..397604Clytia hemisphaericaexon
TCONS_00016734-exon-sc0000248-1491911889:397918..398043TCONS_00016734-exon-sc0000248-1491911889:397918..398043Clytia hemisphaericaexon
TCONS_00016734-exon-sc0000248-1510915933:397918..398043TCONS_00016734-exon-sc0000248-1510915933:397918..398043Clytia hemisphaericaexon
TCONS_00016734-exon-sc0000248-1575043694:397918..398043TCONS_00016734-exon-sc0000248-1575043694:397918..398043Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:393270..398043 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.0027	16.9396	48.2174	51.3821	7.02323	2.74124	7.84249	7.87804	12.1866	10.3534	6.10073	5.47031	4.55324	6.01965	6.38757	6.84422	12.2907	10.5462	0	1.61787	5.52457	3.49529	8.95257	12.6143	10.133	20.2789	3.77747	4.22691	5.50224	8.02661
Blast
[Close]
BLAST of TCONS_00016734 vs. Swiss-Prot (Human)
Match: MD2L1 (Mitotic spindle assembly checkpoint protein MAD2A OS=Homo sapiens GN=MAD2L1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.108e-26
Identity = 41/92 (44.57%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    1 FLEYGVNCILFQRGLYPMESFDRKIAYDVPVFVSTNTDLNDYLHKCIEQMKDWLVKKTIQRIVLVITSVAKKVDVERWTFNIECDKTANEST 276
            F  +G+N IL+QRG+YP E+F R   Y + + V+T+ +L  YL+  +EQ+KDWL K ++Q++V+VI+++     +ERW F+IECDKTA + +
Sbjct:   23 FFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDS 114
The following BLAST results are available for this feature:
BLAST of TCONS_00016734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MD2L18.108e-2644.57Mitotic spindle assembly checkpoint protein MAD2A ... [more]
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