TCONS_00016727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016727
Unique NameTCONS_00016727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016727 ID=TCONS_00016727|Name=TCONS_00016727|organism=Clytia hemisphaerica|type=transcript|length=2559bp
TGCAGGACGACTACAAGAAGATGCATCCGATTTTACACATTTCCAATTGA
AACCAACATCTGATGCACAAGTTGGGTTTGCTTCTCCAGTCCTAGATGTC
AGCAGTCTTAGTGCATTAGAAGTTACTTTCGATTATGTCTTATTTGGTAG
AGATGTTGGCTCTATTTATGTTGTCATGGACGGGAAACTGGCAACCGATA
GTACTGATACCTTCAACCAAATCAAACCTATCAACGCAAACGCATTGAAA
AACACTCCAACACGTCAAGAAGTCTTTTTTAAAGGTGGTAACACAAACAT
CAACACGTGGAattatgatttcaaaaatattttcgatgTCACCAATTTAG
TAGAAGCACagATTACAATCCAATTTTTGAGATTGAATGTAACAACAAGA
AGTATCCGTGATGATTTGAGTATCATTACAATTGATACATTTCAAGTAGC
AGCTTCAACTGTCCTTCCCTCTACCACTGCTCCTCCAACAACGGTAGCTC
CAACCACAGCTGTCCCTACCACTGCTGCCCCTACAACTGCTGCCCCCACC
ACGGCTGCCCCTACAACTGCTGCCCCTACCACGGCTGCCCCAACTACAGC
TGCCCCTACCACAGCTGCCCCTACCACGGCTGCTCCTACCACTGCAGCCC
CAACAACGGCTGCCCCTACAACTGCTGCCCCCACCACGACTGCCCCTACA
ACTGCTGCCCCCACCACGGCTGCCCCTACAACTGCTGCCCCCACCACGGC
TGCCCCTACAACTGCTGCCCCTACCACTGCTGCTCCAACTACAGCTGCTC
CTACCACTGCAGCCCCTACAACTGCCCCTCCAACAACAGCTCCTCCAACG
ACGGCTGCTCCTACCACTACAGATGCCTCAGGTTGGGAATCTTGGAGCGA
ATGGAGCGTTTGTAATGTTGAATGTGGACCTGGTAACCAAACCAGAAATA
GAACTTGTCAATCAGGTCAAACTTGTACAGGTCTCTCTGAAGAAACTCAA
CCTTGCGTAGGGGCAAGTGTTCTTTGCAATGGACAATGGGGACCTTGGGG
TACATTTTCCGCATGCTCTGGTACATGTGGTAACCGGACACGTGTATCAA
AGCGGGTATGCCCGAATAGTGGAGTGCCACCATGCGATGGTAGTGATACA
AAGATTGAAGCTTGTGTTGAAGGAGAATGCTTCAAAGAATCATGCGACGg
tTATGATGGTCAATACAGCTGCACATTCGATGAAAGTTATAATCAAAATC
AAGATGGATTTTGCCAAAGTAACAATTTCGATGGATGGGCTTCTTATGGA
TTCATGGTACACTCAGGAAACACACCAAGTGCTGATACAGGCCCATCAAA
TGACCatactttcaaaaaaaGTTGTGGTAGTTACATTTATTACGAATCCT
CCCAACAATCGTACGGTGTTTTGGCCTCCGGTACCTTCATGAGTACCTCG
GGACAGATGTGTCTATCCTTTGCATTATCAATGTACAGCAAGATCAAAAC
AGACATGGGAGTTTTAAATATTGCCTTACTAAAAGAAGACCTTAGCTTTG
TCAAAACATTGTGGACTCAAGATGGGGCGGTTTCGGACACGCCTGAAGAT
TGGCGAATGTTATCCGTTCCCGTTGATGGATTAACACAAAACATGAAATA
CCGAATTGCTTTTGTTGCAACTCGAATGAACGAAAACAGTGATATTGCAA
TCGATGACTTCAAACTGATGGAAGGAAATTGCACTCAAGAAGTGGATGGA
CAATGGGCATCATGGGGCCAATGGGGCCAGTGTGATAAAGAATGTGGTGA
ATCAGTTCGAACAAGAATGAGATTCTGTACAGAGCCAGCACCCTCCGCCA
ATGGTAAACAATGTCCAAATCAACTGACTGATTGGTATCAAAATGAAGAC
TGTCATCTGCCTGCTTGTAAAGttCATGGCGCTTGGACAAACTGGTTCGA
TTGGGGAGAGTGCGACAAAAAGTGTGGTAACGGAACACGTATTCGTGTCC
GTGAATGTGCAAATCCTGCACCAGTCAATGGTGGTGATCATTGTTTGGAT
CTCAGTGATAATGCACGAAAATTGAGTGATACTGAAGATGAGCCNATGTT
TGGATCTCAGTGATAATGTACGAAAATTGAGTGATACTGAAGATGAGCCA
TGTAATACACACCCATGCAAAAAGTGTTAAGATTTTGAATTGAAATACTG
TACACTTTTTTATACATAATAAGTCTACTTTGTCAACTATGCTATTTTTT
CCTATTTTAAAACATTGAATTACAACTGACATTATTCTCcttttaaaaac
ctttacttatttttataaatattgtTTGTAAAATCGTTGAGACGTAGAGA
TGCGTACTCTCCcgattctttttaataataaaccttttaacttgcaataa
ataaaatacataTATTAAAAGTTAGCAAATCTTTTCCAAATAATGATggt
acacgtcttttttttttaaagaaactagttttaccaagcagcctcaatgt
ttcttaagaaatcggccttttgagccttaaatgtttcttacatgtttcta
aactttttg
Run BLAST on NCBI

transcript from alignment at sc0000248:278745..292813+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016727 ID=TCONS_00016727|Name=TCONS_00016727|organism=Clytia hemisphaerica|type=transcript|length=14069bp|location=Sequence derived from alignment at sc0000248:278745..292813+ (Clytia hemisphaerica)
TGCAGGACGACTACAAGAAGATGCATCCGATTTTACACATTTCCAATTGA
AACCAACATCTGATGCACAAGTTGGGTTTGCTTCTCCAGTCCTAGATGTC
AGCAGTCTTAGTGCATTAGAAGTTACTTTCGATTATGTCTTATTTGGTAG
AGATGTTGGCTCTATTTGTAAGTGCAATTATCTACATTTCGCCTCCCTTT
TTTACATTTCGCCtcccttttttatattttcgacTCTCTACTTTACAGac
tttcgcgaacagaaacttATACGAGATTGAAAAATCTACGATATATTATt
cactttcgcgaatttaaagaaaaatatttcttgaattgGATTGAAACTTT
TGCTTTCTGACTTATAAGGATttaacaggctaaaaagtgccatgaaactt
acatattattttttaagttagaaGTTTCTATTTTATCAAGAATTTCTCGC
GAGCATTAAGTTTCGAGAATAGCACTTtctagaattttcaaagacattta
ctttcgcaaaagCCGCGAAGTTTCTTCTCGCTAAAGTTTGTACCCCTAAA
GTAATTTTCTTTAATTACAACTCTAAGACTTGGAGAAACATGAAGTTATT
TCTGCCCTGCTAGGACCAATGAAGTAAANcaaaaaaaattcaaataattt
aCCTGGATCTTAATTCGAATTCCCATCCTCCTTGGTTTACATCAGGTTTA
CCCGAAGGCCCCTCTATCGATAGCTAATTTACCCACTTATTCTAGATCCT
TCTCTTTAATTGCTTAGCGTCAAGCAGGAAGGCATCAAGTACTTTTTTTG
TACTAAGtacgaagtctttggtatgactgTGGAATGTGGTGAACTGTAAT
ACTTTTATTGATTTGCAGGACGACTACAAGAAGATGCATCCGATTTTACA
CATTTCCAATTGAAACCAACATCTGATGCACAAGTTGGGTTTGCTTCTCC
AGTCCTAGATGTCAGCAGTCTTAGTGCATTAGAAGTTACTTTCGATTATG
TCTTATTTGGTAGAGATGTTGGCTCTATTTGTAAGTGCAATTATCTACAT
TTCGCCTCCCTTTTTTACATTTCGCCtcccttttttatattttcgacTCT
CTACTTTACAGactttcgcgaacagaaacttATACGAGATTGAAAAATCT
ACGATATATTATtcactttcgcgaatttaaagaaaaatatttcttgaatt
gGATTGAAACTTTTGCTTTCTGACTTATAAGGATttaacaggctaaaaag
tgccatgaaacttacatattattttttaagttagaaGTTTCTATTTTATC
AAGAATTTCTCGCGAGCATTAAGTTTCGAGAATAGCACTTtctagaattt
tcaaagacatttactttcgcaaaagCCGCGAAGTTTCTTCTCGCTAAAGT
TTGTACCCCTAAAGTAATTTTCTTTAATTACAACTCTAAGACTTGGAGAA
ACATGAAGTTATTTCTGCCCTGCTAggaccaatgaagtaaaagcccAAAA
GGCTAGAACCGAACCTTTaccctttctcaggcaagagtgACGCCTTAGAA
TATACGCCCTATTTTTATTAGCGGTTTCTCTGTTTTCGAGtggtatattt
ttgaaatctagcgggaaattttacttttaatttgTATAAAAGTCACGCGC
GTCTTTCAAAGCCGCAtaacttaggtaggatttagTGGCTTCAAATCATA
CCTTGGAGATACCCTTCTAGCCTTTCGGATTAATACTTCATTTTCtgaga
aattgataaaaattttcattcctATACTGTGGGAAAAATTCTCACCGCGC
CTGTGAGACAAAGGTGTCAAAGGAAACCAAGCACTCATATTAAATCCTTT
CCTTTTAGATGTTGTCATGGACGGGAAACTGGCAACCGATAGTACTGATA
CCTTCAACCAAATCAAACCTATCAACGCAAACGCATTGAAAAACACTCCA
ACACGTCAAGAAGTCTTTTTTAAAGGTGGTAACACAAACATCAACACGTG
GAattatgatttcaaaaatattttcgatgTCACCAATTTAGTAGAAGCAC
aggtaaaaatattgcaaatatctCAATTCTATTTGTGTACTTATTTGTTT
AGAAACTCTACATTTTACCTCTCTCTACAATGAGTTAGAATATGTAGTTT
TATTATTaagattttttctataaaaCTCGAACCAAAACTAGCTAAAATCT
ATGCTAGGCTGTCCCAGGGTCTTTTGATAGCAGACATGGCAACAGACAGA
CAGGTCAGATGACTGTAGTTGAATTTGGGAGCCAAAAGTAGTCAATGGCC
TCAAATAAAAAGTAATGGAACACCTTATAATGTTTAACACAAGAAGGGTC
AGGCATTATCATAGTCTTTTTCAGcacaatttatttattattgtaTTTAC
AGATTACAATCCAATTTTTGAGATTGAATGTAACAACAAGAAGTATCCGT
GATGATTTGAGTATCATTACAATTGATACATTTCAAGTAGCAGCTTCAAC
TGTCCTTCCCTCTACCACTGCTCCTCCAACAACGGTAGCTCCAACCACAG
CTGTCCCTACCACTGCTGCCCCTACAACTGCTGCCCCCACCACGGCTGCC
CCTACAACTGCTGCCCCTACCACGGCTGCCCCAACTACAGCTGCCCCTAC
CACAGCTGCCCCTACCACGGCTGCTCCTACCACTGCAGCCCCAACAACGG
CTGCCCCTACAACTGCTGCCCCCACCACGACTGCCCCTACAACTGCTGCC
CCCACCACGGCTGCCCCTACAACTGCTGCCCCCACCACGGCTGCCCCTAC
AACTGCTGCCCCTACCACTGCTGCTCCAACTACAGCTGCTCCTACCACTG
CAGCCCCTACAACTGCCCCTCCAACAACAGCTCCTCCAACGACGGCTGCT
CCTACCACTACAGATGGTAAGTTCCAGTCtatttaaaaaagctttttcgT
TAATTGAAGAAACGTTCTTATTTTGGACAGACAGACAagcagacagacag
acagacagagaGCGGCAGCGCCATTTCTTATCCTCTCTTCCAAAATCTCT
GGCCTCAGATATTTCATTATTCGAACAAACCGGAGGCTAATTGTTACAAA
GGGATATTTTAGTTAGCTACTGGGATAGCAATCAATGACGCTTTTCAGTT
TTTACaatggaaaaatattattttttcaaatttttggttaAGCCTATTAA
CCCCaagcttttttcatttttgtatcccaaggggggggggggggggaatc
tACCACCCTCTATTACTTTtcatctagaagagctatggccatgaaatttg
gcacagattttcttcatcaagacacaaatttccaggaagaaaaaaaattt
atgacgtcattcaaaaagcAATGAcatcatcacaaaatttccacctgtcg
gtaaaaaagcccaaatatatggtttacaaaaatgtctgtcacagtcgaac
caataaagatatttagattcaGTTTGAAGATTCTGATAAAAGGCTTTCCT
TTAAttataattgccggttttgtattttctatgaagattttttatttttc
aaattcacattgtcaatttttatcacgtgtcaaaatttgaaaatgattga
ataaatagttgccaagttatcagcactttaaaatgtTGAGTTTATAGCGA
TTTTAGCTGAGTtatatgtcatgtttcacaataatgtcataaaacctgat
ctggacgaCCTATAACCCTAAAATTTCGCACAattactcttaataagatt
ttataaaaatcagaaagtttcatGTCGATTATATACACgagatatacaca
aaagaactccagtATGGTAGATTCccggggggcagctgggcaaaaggacc
gacgggtatgtgcgggtcctacgggtaccttttccaatatgtttaaaatg
cactgtaagggtcggaaaaactagagatgcactgtaagggtagaaatttc
agaaaattcttgaaaaatctagatattttgaccaaaaatgctagaatttt
tgCAGTTCAGTTCCagtttttgcacgaaagggatcgaaaatttgggggaa
aatgcactctaagggtatgattttcactgatttttgctgcactgtagggg
tgcaattttaaaagccaatttttggcccgcacataccgtcagtccgcaaa
cccagtgccccccgggggtagattctacccccccgggctaatagggttaa
gactGTGATGATTTTTATCATGTTATCGATATCATGGGGTAGGGTTGTTG
CAATAGAAATACGTTATGATAATGTGTTTATTATTGGaatagaaaagaga
aaagaggtaAGTCGAACCTAGCCCAATTGTCAGCTGCCAGGGGGCATAAA
AAGAATGTGAGAGATTATttgtatcaaaaacaaaacacacgGTATTTACC
AAGCTGCTAAAATGGTCAAGTTGATGCGAACCAGAAAATCTCAACAACTC
CAGTTTCAATGAAGCAAGGTCTCTATATTTCTCTGTCGACATTAATTTTC
AATAGATATAGTTCCTTCCAATCGATAGCCCGATCATATCACACCATGTG
CGATGCTTGCAAAACTTTTTCTTGACTTTGAATTTGTGTACCATCTACAT
TTATTGTTGACATACATAAAAAGTCACTCACTAAAAATAAAGTctaaaag
ttttttaagaacAAGGTAAAGAGAGAAAACAATGAAAGCAATGCTTGAGA
GATATCACTCATAGccttatgaaaacttgagcaaagatctagaagatttg
aaaaatgttgaaagaGGCTTCAAAGCAAAATTCACCACAGAataaaaata
tgcttttcaaagaaaatgttaagaaagtATGATAAGCAACCTCGAtggct
tcgaccgccatcttgaaaaCTCTTGGTGTCTATGGAGCGCAGAAGtcgaa
aatatagcttttatagccagtatcaaACTTTGGCCGGCTTCTTGCTTCTC
CGGCAACATTAAGAAGTGTGATACTGATTTTACGCAACGTTTCTAAAAAA
ACGGGCAGACTGACTGACACACAAAAGGAAGGAAGGACAGAAACACAAAT
GAAAACCCTATCGCTAGCGTTGGGCCAATTATTGCTTTGACGTACACAAA
AATAGAAACAATTTATTGCCATTCGAAGACAATATTGTAAGCTTGAACCC
AATCTCTATGTCGATCTATTGATTTGATTGGCCAATGGTTTACAAACTAA
AGCCTATTCGCTTTGAGTTTGTATGTATTCTTTTTTGCTAACGTGTGGGA
ACCTCTCTTATCGTGATAACACTGGTATGGTTTCCACGTGATATCAAAGA
AGAgcgtatacacgtttttttataagaacataaggctttcatggcaaaaa
tgttagagtaagttaagaacattttaaggctttgtagactccAAAATACC
TAACGCCTAATTTCTTAAGGAaagggacaaaaatactcatggcaaaaata
agaacatgctaataacacttttaggcttaaaactcaaaaagttacgaaca
tccgaaggtttcaaaaattttgaatgttataataaaaataaaatgtactC
AAATTGAATGTACTTTATATAATCATTATCTTCTTTCAGCCTCAGGTTGG
GAATCTTGGAGCGAATGGAGCGTTTGTAATGTTGAATGTGGACCTGGTAA
CCAAACCAGAAATAGAACTTGTCAATCAGGTCAAACTTGTACAGGTCTCT
CTGAAGAAACTCAACCTTGCGTAGGGGCAAGTGTTCTTTGCAGTAAGTCA
AATCTTGGATTCCAACATTAAGTTAAACTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNgaaaatgtataacatgccatagttttgttggt
tacatcagtcagaaaacacattttaaacacggcaattatgaaaaattcac
tatggtcagagcccttaacgtGTGGGAAACTCTCTTATCGTGATAACACT
GGTATGGTTTCCACGTGATATCAAAGAAGAgcgcatacacgtttttttat
aagaacaaactatttaagaacataaggcttcaatggccaaaatgttagag
taagttaagaacattttaaggctttgtagactccAAAACACCTAACGCCT
AATTTCTTAAGGAaagggacaaaaatactcatggcaaaaataagaacatg
ctaataACACTTTTaggcgaggggtaaatcacttgaaaaaaggtgtacga
tactttttgactttttgacttttttttgacttttttcaaactttcatttt
gacttttttccgacaaaaacgcccaccgccttcgGGCGCCCAACATCTTC
CGcccaaatctgtccaaaaacgccaaccgcccataaattttgctccaccc
atccgcccattcaagaaacttttttgactttttcaagactttttttggac
ttttatttgactttttgacttttttctaagaatttttgactttttctttg
actttttgactttttctttgactttttgactttttttttgacttttttga
ctttttttttgactttttgtagaggtgtacgataatttttcgagtgattt
acccctcccttttaggcttaaaactcaaaaagttacgaacatccgaagat
ttcaaaaattttgaatgttataaaaaaaattaaatgtacTCAAAGTGAAT
GTACTTTATATAATTATTATCTTCTTTCAGCTTCAGGTTGGGAGCCTTGG
AGCGAATGGAGCGTTTGTAATGTTGAATGTGGACCTGGTAACCAAACAAG
AAATAGAACTTGTCAATCAGGTCAAACTTGTACAGGTCTCTCTGAAGAAA
CTCAACCTTGCGTAGGAGCAAGTGTTCTTTGCAGTAAGTCAAATCTTGGA
TTCCAACATTAAGTTAAACTCTGGGCcggcgaatcaattttgaaagtgga
ggggccaaatagtaagtgtctaaggaggcgtcaccatggttggcgccgac
gggcctttcttagcaaaaaagtgcccccccccccagtttcGCCGGTCCTG
AAACTTAATAACTACTTTGCCCTGTCTAAAATTTTCATCATAATTTTcgt
aataacaataataatttgTTACTTTTATCAAACTTTGTTTAAAACACTCA
CTTTTTGTCTCtctaaattcacttttttatacGAATTTAGTCTCTCAAAA
ATTTGTTAGTCAGCTTCGCACATACATATTAGGGGTAAAACAATGACTTA
AACAACTCACGAAAGACCTCAAAAAACCATTAGAAAAATGATTAGAAATC
TAAATTTGACAGTGCATTCTTGCCGTCAAGTATTATAGACAGTCGTTATT
TTCGAAATTGTCTGTAACTTTAAGGCTCATGACTATAGATGAAATAACTA
ATAACTAAATAAAGTGATGTTCTTTCTTGTTcatgttttgaatttcaagc
ctaacaagattttttactttttgtatTGAAAATATCGGCTGGTAAAGGAT
TCTGGTTTACACTCCTTTAAAGcaaattaccttatcggccctttttaaaC
CGGCCCTTATTGTCGTTCGAGCTCgtggtgtaaaaagggccgataaggta
ataagTTTATAGGTTAAAGGGGAGTTAAACAGGTACAATCAGACAAGTAA
ATCGTCTACTTTGTGCATCGTTGCTTTTCAGATGGACAATGGGGACCTTG
GGGTACATTTTCCGCATGCTCTGGTACATGTGGTAACCGGACACGTGTAT
CAAAGCGGGTATGCCCGAATAGTGGAGTGCCACCATGCGATGGTAGTGAT
ACAAAGATTGAAGCTTGTGTTGAAGGAGAATGCTTCAAAGAATCATGCGA
CGGTAGGAGTTTGTTTATTGAAGGTCTATCGTGTTTATTTGAAAAGGAAC
TTTaatgaatttttatgaaatttttatttctacCGGGtggggtgcgccac
aaaaaagtttctctctttaaagtgaattttctcgaagtctaaaaatttaa
aaataaccaatcctttttcattggaaagaagaaagataaagtgttcaaaa
acgttgaaaatcgacctatcgtCGTTAATTCTATATTAACGAGCTCAGTA
TTCCCCAAGTTTGAGTgtggaaattcttttttcagattGAAATGACTCAT
TGAACCAAATATTATTTTTCGGGTATTTCTACAATTTGAACGATTTTCTC
ACTAATAATATTCTTATATAATGTGATGTGATATCAgcggttaaaggttt
tgtttttacataagcgttcccgtttcatatcagacacatattttatatca
agacagtgtctacctattgttatactatgctgatataagcaaaaaaatgc
ttttcttttcctctttctgagcAATCTTGCTTCACacccgtgtcaatcca
atgtgaaaaagcttgtgaattaaaattgatgagtaagcaaacgatatcac
tcttatttaaaaacaaaacctttaatgtgACTCGTTTCATTATGACCCGT
AAAGAAATGCAAAGCAAGTTGAAAAAACCTTTACTTTTCGTATGGTTaga
aaacaaagacaatagGCCAGACATAGACGCTCTAATCAATTTGGATATTT
CCAAAGACTGTATTTACCCAAACTCGTGTCCAGCCCCCTAGTGTACATTT
GACACCTATGGTTATGACAGTGTTTATGAAAAGTGTACCTCGTCCAtctg
taaaattaaaaaatgtttcaagtgtCTTTGAGGTAGGGTAAGAACTTtca
cttttaacttttaacttttttaggtTATGATGGTCAATACAGCTGCACAT
TCGATGAAAGTTATAATCAAAATCAAGATGGATTTTGCCAAAGTAACAAT
TTCGATGGATGGGCTTCTTATGGATTCATGGTACACTCAGGAAACACACC
AAGTGCTGATACAGGCCCATCAAATGACCatactttcaaaaaaagttagt
tttaaTCATGATTAAATCCTTGAACCTAGCTTAATCATTGATTTTTGTAA
CAGATCTAGTTGTATTCTATCCGCAGACACGCGTTTCGTCCATCCTAGGA
CTCGTCAGTGAAGCTCAGACCAGAGTGCTCTAAATACTAAGTGTTGCATG
ATCGCTTTCGGTGAGCAGAGTAGCAAAGCTTAATCCGGACAAGCagcagt
tgaccccctggacaacccaaattacccccggacagagcaaatttaccccc
cgaacaaggcaaattttgatgatttttcgctaccccccggacaatatata
aggttaatgtttttcttgaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttgatg
atttttcgctaccccccccccaacaatatatcctccatcctcctcatttt
ctggaagagcaaATTGCTTATGGTCATGACAATAATATTCTCTATTTGAA
TAATCGTTAAATTTCGATGCTCGGGGCgataaaatttttcattttaaact
ttaaatatTATTCCAGGTTGTGGTAGTTACATTTATTACGAATCCTCCCA
ACAATCGTACGGTGTTTTGGCCTCCGGTACCTTCATGAGTACCTCGGGAC
AGATGTGTCTATCCTTTGCATTATCAATGTACAGCAAGATCAAAACAGAC
ATGGGAGTTTTAAATATTGCCTTACTAAAAGAAGACCTTAGCTTTGTCAA
AACATTGTGGACTCAAGATGGGGCGGTTTCGGACACGCCTGAAGATTGGC
GAATGTTATCCGTTCCCGTTGATGGATTAACACAAAACATGAAATACCGA
GTAAGTAGAGAAATAGTATCCCATTTTCGTAGATGTCATTATCAAGGGCT
TACCATATTAATAATAATAGGGTAATATGGTGATAATTAGAGCGTTGAAT
ATCGAAACGCGAAGTGTCATTCGCATCCCCTGTGGCACAATACATATAGA
TACAATGGCGCTGTTCCTGAATGTACTCTCATTGGACTGGATAGCTCAGT
CGGCAGAGCAATTGAAATAGTAATACTAAGTTCGAATCTCACTTCGGCCC
TCAGTTTAGAAATTCGCTAAAAAACTGAGGTCAATGCGCAGATGTATTGG
CAAAATACctcaaaatcaatttatttaTTAGGCTTTGCAATAAAGAGACT
TTAAAGTCTAACTCTAGAAAACGTTccaatttataaaaaaactctGGGTT
TGACAATCTACTATTGTATCATTGTCATGAAATTATATTGAATAGTGCTC
GATGATAAACAAACAAGATACCAGAgccaagcaaaatttaaaagttttct
ttcaataaaagtacATAACTTAAAGTTTCGTGCTTCTGCACTTGTTCAAA
TGTACAAGAGATGTGGTTGTGAAAAAAATCTGCgtgtaaaagtcaaaaaa
tgtttagaaaaatgAGATAATTGGATAATTAAAAACTGTTTAGACAAGGG
GTTACAATCtattattgtaaaatattttgctgtttctcatttAACTACTA
TTGGcgttgaaaaaaatatatagatACCACTTTAATTATTCTATGGatgg
atttaaaaaattaatcaaactaGGATTATTATCTATATCTTCAATTACAT
GTGACtccctctctctaattcgatttttaaggagaCATAGGATTCGAATA
GCAGAGAGTGGCATCGTTGACGTTTGGACTATATAGATGAACCGTATTAG
TAAACAGAGAAGgattaaaggccggtctccacttgcacgcactgcaatcg
cactttttcgaacaaagcttccacgctattggtcaaaagaaaaatgaagc
aactccattggcgcgatctgacgtaacggttgaaaaaagttgaaatgtgt
tcaacttctttttcaagcgcgctacatttttatgacgtaatcttttttcc
aagcaaaaaggattgaagccaaaaggtgcaaTCGCAAcgtgcgcaagtgg
agaccggcctttagtaAACAGAGAAGAACTAAAAACCACCTTACCTTTAG
ATTGCTTTTGTTGCAACTCGAATGAACGAAAACAGTGATATTGCAATCGA
TGACTTCAAACTGATGGAAGGAAATTGCACTCAAGAAGGTACGAGTTTCC
agctgaaaaaaatattgaaaataaataagtACCGTAATTGTCCCCATTAA
ATACCCTGggcctttttttctcaaagtaGGGCGTTTATTATAGAGGAGGC
GTTTATACGAAGCAATACATATGGTATTTGAATAaacaaaagtaaatttt
atgCTCACTAAATGGTAACAGTattactacaatcatggtcaaaatctatt
gagaatttacctttttcctcgtttttcgaaattagGAGTTCgtgcgagaa
agtcgattttttctgagccttattggaccatttttgagcttttggatcct
cagatatATACTACAAAGTCTTATATATCTAgcattaaaactctacccta
acttagagcacttccaaatcgtttgtggttttaAAGATTCGtggggattt
cccttttttctataATATTACGAACATGATTGTAGTGGGGATACATATTT
CGAAGTGCAACGCAGGGACCTCCATGATTAACTCAGCTAGAGGAGGAATA
ATGTTAGTATAAGGTGGTAATGAGTGCTACAATTTAATTAACGCAAAAGG
caggattttcgaaaataacTTTAGCTCATAGTTTGTTAAAAGATTGTAAT
TAACGTGAGGATAACCGATTCGCGTTAATAACTTAAATTAGTCAATTGCA
TTCTTTTACATTGTATTTCAGTGGATGGACAATGGGCATCATGGGGCCAA
TGGGGCCAGTGTGATAAAGAATGTGGTGAATCAGTTCGAACAAGAATGAG
ATTCTGTACAGAGCCAGCACCCTCCGCCAATGGTAAACAATGTCCAAATC
AACTGACTGATTGGTATCAAAATGAAGACTGTCATCTGCCTGCTTGTAAA
GGTTAGTCAATTCCTGatatatgcaccactgcaatgacttcacgaaatta
tgcaggTTTTCTGTTTTTATTCCACCCAAtgcgtcactttttctattgtt
taagtgacgtaagtggaaaatttcaaaagttctcagaagacccTCCAGTG
gcgtgcatatcatgaatacactGCACTGGTTTCGAGATacagtctcctta
actcgaacctctataactcgaatgtttccTTTACTTGAACAAGCTTTCTA
TTCCTTCGGTAGAATGCCTTTTATGAACCTTACTCAATAACTCGAAATGT
CcttaatttgaataattttgtgTTCTCCATGCGTGCTGAGTTATGGAGGC
TCccctgcaaattttttttgattccaTGATGATAGCATGAAAGAAGAAAT
TAAGTAAACGAGCTCCCTNTCCTGCAGATTTTTTTGATTCCATGTGATTA
GCATGAAAGAAGAAATTAAGTAAACGAGCTCCCTGTTTGAATAGTATGAC
AAAATGTACAATTTTCAACCAACTAGATTttgtttattcaaaatttttgt
ttaccaTAGCATACATTATGAACATAAAAATTACCTGCCCAttttccccg
ggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNccgtcagtccgcaaacccagtgcccccccccgggc
cattttcattaaaaactattTCTGAACAATATTGATGATCATGTTATGAA
AATTCCCAACAcaaatcaactttttcttttagttCATGGCGCTTGGACAA
ACTGGTTCGATTGGGGAGAGTGCGACAAAAAGTGTGGTAACGGAACACGT
ATTCGTGTCCGTGAATGTGCAAATCCTGCACCAGTCAATGGTGGTGATCA
TTGTTTGGATCTCAGTGATAATGCACGAAAATTGAGTGATACTGAAGATG
AGCCNATGTTTGGATCTCAGTGATAATGTACGAAAATTGAGTGATACTGA
AGATGAGCCATGTAATACACACCCATGCAAAAAGTGTTAAGATTTTGAAT
TGAAATACTGTACACTTTTTTATACATAATAAGTCTACTTTGTCAACTAT
GCTATTTTTTCCTATTTTAAAACATTGAATTACAACTGACATTATTCTCc
ttttaaaaacctttacttatttttataaatattgtTTGTAAAATCGTTGA
GACGTAGAGATGCGTACTCTCCcgattctttttaataataaaccttttaa
cttgcaataaataaaatacataTATTAAAAGTTAGCAAATCTTTTCCAAA
TAATGATggtacacgtcttttttttttaaagaaactagttttaccaagca
gcctcaatgtttcttaagaaatcggccttttgagccttaaatgtttctta
catgtttctaaactttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009353XLOC_009353Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016727-exon-sc0000248-1491911889:278745..278911TCONS_00016727-exon-sc0000248-1491911889:278745..278911Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1510915933:278745..278911TCONS_00016727-exon-sc0000248-1510915933:278745..278911Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1575043694:278745..278911TCONS_00016727-exon-sc0000248-1575043694:278745..278911Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1491911889:280603..280796TCONS_00016727-exon-sc0000248-1491911889:280603..280796Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1510915933:280603..280796TCONS_00016727-exon-sc0000248-1510915933:280603..280796Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1575043694:280603..280796TCONS_00016727-exon-sc0000248-1575043694:280603..280796Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1491911889:281147..281660TCONS_00016727-exon-sc0000248-1491911889:281147..281660Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1510915933:281147..281660TCONS_00016727-exon-sc0000248-1510915933:281147..281660Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1575043694:281147..281660TCONS_00016727-exon-sc0000248-1575043694:281147..281660Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1491911889:284334..284486TCONS_00016727-exon-sc0000248-1491911889:284334..284486Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1510915933:284334..284486TCONS_00016727-exon-sc0000248-1510915933:284334..284486Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1575043694:284334..284486TCONS_00016727-exon-sc0000248-1575043694:284334..284486Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1491911889:286476..286646TCONS_00016727-exon-sc0000248-1491911889:286476..286646Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1510915933:286476..286646TCONS_00016727-exon-sc0000248-1510915933:286476..286646Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1575043694:286476..286646TCONS_00016727-exon-sc0000248-1575043694:286476..286646Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1491911889:287568..287738TCONS_00016727-exon-sc0000248-1491911889:287568..287738Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1510915933:287568..287738TCONS_00016727-exon-sc0000248-1510915933:287568..287738Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1575043694:287568..287738TCONS_00016727-exon-sc0000248-1575043694:287568..287738Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1491911889:288311..288594TCONS_00016727-exon-sc0000248-1491911889:288311..288594Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1510915933:288311..288594TCONS_00016727-exon-sc0000248-1510915933:288311..288594Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1575043694:288311..288594TCONS_00016727-exon-sc0000248-1575043694:288311..288594Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1491911889:289795..289882TCONS_00016727-exon-sc0000248-1491911889:289795..289882Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1510915933:289795..289882TCONS_00016727-exon-sc0000248-1510915933:289795..289882Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1575043694:289795..289882TCONS_00016727-exon-sc0000248-1575043694:289795..289882Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1491911889:290566..290745TCONS_00016727-exon-sc0000248-1491911889:290566..290745Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1510915933:290566..290745TCONS_00016727-exon-sc0000248-1510915933:290566..290745Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1575043694:290566..290745TCONS_00016727-exon-sc0000248-1575043694:290566..290745Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1491911889:292177..292813TCONS_00016727-exon-sc0000248-1491911889:292177..292813Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1510915933:292177..292813TCONS_00016727-exon-sc0000248-1510915933:292177..292813Clytia hemisphaericaexon
TCONS_00016727-exon-sc0000248-1575043694:292177..292813TCONS_00016727-exon-sc0000248-1575043694:292177..292813Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:278745..292813 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000787985	0.000518449	0.000533062	0.00126653	0.0016875	0.000469425	0.0219041	0.0243628	0.000881219	0.00657603	0.00448536	0.000346079	70.6244	44.8769	0.0010957	0.000976684	0.00242874	0.00134676	116.022	195.996	0.00216333	0.00193207	0.00102195	0.000325801	0.0037802	0.0232535	0.0203888	0.0158605	0.000146885	0.00106824
Blast
[Close]
BLAST of TCONS_00016727 vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 6.486e-20
Identity = 43/116 (37.07%), Postives = 58/116 (50.00%), Query Frame = 2 
Query: 1706 DFKLMEGNCTQEVDGQWASWGQWGQCDKECGESVRTRMRFCTEPAPSANGKQCPNQLTDWYQNEDCHLPACKVHGAWTNWFDWGECDKKCGNGTRIRVRECANPAPVNGGDHCLDL 2053
            DF          V+G W++W  W QC ++C   +R R R C  P P   G  C   L    + ++C++  C V G W+ W  W +C   CG G  +R R C+NPAP  GGD CL L
Sbjct:  771 DFLRAGRYSAHTVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPC---LGPSLEYQECNILPCPVDGVWSCWSPWTKCSATCGGGHYMRTRSCSNPAPAYGGDICLGL 883
The following BLAST results are available for this feature:
BLAST of TCONS_00016727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEM5A6.486e-2037.07Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3[more]
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