TCONS_00016723 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016723
Unique NameTCONS_00016723
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016723 ID=TCONS_00016723|Name=TCONS_00016723|organism=Clytia hemisphaerica|type=transcript|length=844bp
TATGGAAACAAGAAATATGTTTGTTTGTCAATCAAATGGACTGTCACTTC
CTGATGTTCATATAAATAGAGGTATACGGTGTGGAGACAAATCATTCAAA
CTTGCAGGATCAAGAATTGAAACACAGGATCAATCATCATGAAGATCATC
ATTCTCGCCGCTTTCTTGGCTGTCGCCGCCGCCCTTGAGGTTGGAACCCA
AACTGGTACCACACCACCAGCTGTCCCATGCCCAGACTCCCTCTGCAAAG
GAAGAGCTGATGGAAACTACGAATACTACTACTACAGCCGATACAACCCA
CACTATTTCCTCCAATGCTCAAACGGATTAGCTTACTGTCAAGCTTGCTG
GCCATTGTCCTTGGAATTCAGTGAACCATGCAACCAATGTTTGTACAACC
GAAAAGACGAATGTGTCACCACACAACCATGGGAACCAGCAACCACCTTC
GAATGCCCAGACAAGTGCCCAGCCCGTGGACCACACTTCAGTGGAAACAT
CGAAGACGACCACAACCCCCATCAATACGTCGCTTGCTTCCACGGACAAA
CTGTCGGATGCATCGCTTGCCCAAGAGGATTACAATTCAACGAGAAATGG
AACGCCTGTTTGTACGAAGGAAAATACAAGACCGAACCAGAATCCCCACC
AAAACactaaattattattatttttaaatgaaaaatgaaaataatttaat
ttcttaaatttctttttctttcctctCAATCTTTTGTTGTTCTAActtaa
tcttttctttttcttccaaatttattttgtaatttatgatttttatctGT
AATTATTGCGAAATATCTCTACAATCTTTCACCATATTAAACAC
Run BLAST on NCBI

transcript from alignment at sc0000248:185090..186838+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016723 ID=TCONS_00016723|Name=TCONS_00016723|organism=Clytia hemisphaerica|type=transcript|length=1749bp|location=Sequence derived from alignment at sc0000248:185090..186838+ (Clytia hemisphaerica)
TATGGAAACAAGAAATATGTTTGTTTGTCAATCAAATGGACTGTCACTTC
CTGGTAAAATATTCCTTGTCTATTGTAGCAACTAGAAGATCTGATGCAAA
TACCATTCAACTGAATTTTGAATCCTTATGAGAAAAATCTTCCGATGTAA
TTAATAATTAGTTACATAACCGCATTCAATTAATTGACAGACAAACATAG
TAATTGCTAATTACTACAAAATCACATAACTCTAGTTAATTATGAAGACT
AAAAGATTCTTAAAGATTTGTTCAGGATAGACTCTTTTTTTGTAAGCACC
AGTAGACTTTTGATTAGGCtctgctgttcttatttttttttcactttgag
cctcaaattgttcttatcctattcttatttatagggtgaaattgaggtat
tttctaggccttttacccaatttttactactttgaaccctgaattgtttg
aaatttaGTAAGTGTAGGCTCAACATTGTTATTATTCTTTggtgattttg
agcctcgttgttcttatagaaaaaaggAGTGTAGAGGAAATTAGATATTT
TATAACACTTTTTAAGATGTTCATATAAATAGAGGTATACGGTGTGGAGA
CAAATCATTCAAACTTGCAGGATCAAGAATTGAAACACAGGATCAATCAT
CATGAAGATCATCATTCTCGCCGCTTTCTTGGCTGGTAAGTAATCTTAAA
TAAATTGCTATTTTGCAAAATACTCTTTTTTTCccaatcttataagaaca
acaaAGCTCAAATATGTCGAAAAGTAAGAacaaataagaataatgctgaG
TCTGGAGGGTCGAAATAGTAAGAACAGGGTATTaaaactaaaatagtttt
actctataaataagaacagggtaagaataatttcaggctcaaaataccaa
aaataataagaacagTCGAGCTTCATCAAAACTGATTATTAATAAAGAAG
AGAATCtttctttatattttcaaacataatCTTCAAATCTAATAAACACA
TCTACTTTTTGTCGCTCATAGCTGTCTCTAAAACTATTTTTCAATTTGTA
GACGAATCATTACTTTCTATACTTTAGTCGCCGCCGCCCTTGAGGTTGGA
ACCCAAACTGGTACCACACCACCAGCTGTCCCATGCCCAGACTCCCTCTG
CAAAGGAAGAGCTGATGGAAACTACGAATACTACTACTACAGCCGATACA
ACCCACACTATTTCCTCCAATGCTCAAACGGATTAGCTTACTGTCAAGCT
TGCTGGCCATTGTCCTTGGAATTCAGTGAACCATGCAACCAATGTTTGTA
CAACCGAAAAGACGAATGTGTCACCACACAACCATGGGAACCAGCAACCA
CCTTCGAATGCCCAGACAAGTGCCCAGCCCGTGGACCACACTTCAGTGGA
AACATCGAAGACGACCACAACCCCCATCAATACGTCGCTTGCTTCCACGG
ACAAACTGTCGGATGCATCGCTTGCCCAAGAGGATTACAATTCAACGAGA
AATGGAACGCCTGTTTGTACGAAGGAAAATACAAGACCGAACCAGAATCC
CCACCAAAACactaaattattattatttttaaatgaaaaatgaaaataat
ttaatttcttaaatttctttttctttcctctCAATCTTTTGTTGTTCTAA
cttaatcttttctttttcttccaaatttattttgtaatttatgattttta
tctGTAATTATTGCGAAATATCTCTACAATCTTTCACCATATTAAACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009350XLOC_009350Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016723-exon-sc0000248-1491911889:185090..185142TCONS_00016723-exon-sc0000248-1491911889:185090..185142Clytia hemisphaericaexon
TCONS_00016723-exon-sc0000248-1510915933:185090..185142TCONS_00016723-exon-sc0000248-1510915933:185090..185142Clytia hemisphaericaexon
TCONS_00016723-exon-sc0000248-1575043694:185090..185142TCONS_00016723-exon-sc0000248-1575043694:185090..185142Clytia hemisphaericaexon
TCONS_00016723-exon-sc0000248-1491911889:185656..185774TCONS_00016723-exon-sc0000248-1491911889:185656..185774Clytia hemisphaericaexon
TCONS_00016723-exon-sc0000248-1510915933:185656..185774TCONS_00016723-exon-sc0000248-1510915933:185656..185774Clytia hemisphaericaexon
TCONS_00016723-exon-sc0000248-1575043694:185656..185774TCONS_00016723-exon-sc0000248-1575043694:185656..185774Clytia hemisphaericaexon
TCONS_00016723-exon-sc0000248-1491911889:186167..186838TCONS_00016723-exon-sc0000248-1491911889:186167..186838Clytia hemisphaericaexon
TCONS_00016723-exon-sc0000248-1510915933:186167..186838TCONS_00016723-exon-sc0000248-1510915933:186167..186838Clytia hemisphaericaexon
TCONS_00016723-exon-sc0000248-1575043694:186167..186838TCONS_00016723-exon-sc0000248-1575043694:186167..186838Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:185090..186838 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.773406	0.320887	0.387343	0	5.69568	8.81702	0	2.28865	0	1.90336	0.855803	0.556689	8.08305	35.9332	368.423	83.3571	12.2456	1.2999	0.89706	0.939633	0.215679	0	0	0.295044	0.583084	0	0	0	0.611205	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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