TCONS_00016702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016702
Unique NameTCONS_00016702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016702 ID=TCONS_00016702|Name=TCONS_00016702|organism=Clytia hemisphaerica|type=transcript|length=252bp
NNCGACCATTGATAAACATTGTTAAGGTCGTTTTGTAGGTGAAACTGGTC
AATGATGTTTTGGATTCCTTTCTTTACTCGTGTGTCATCAGCAAAACTTG
CAAGTTCTGATAGGTatcatttattttatttcttctcCAAAGATTCAGCA
ATGTTTCAAAGAATTCATATTTTTACCCCCCGTACCACCCCAAAACCCAC
ACGCACGAATATGGCTGCTGCACACAGTGCATGCAATCAACATAGAGCAT
TG
Run BLAST on NCBI

transcript from alignment at sc0000246:255051..255302

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016702 ID=TCONS_00016702|Name=TCONS_00016702|organism=Clytia hemisphaerica|type=transcript|length=252bp|location=Sequence derived from alignment at sc0000246:255051..255302 (Clytia hemisphaerica)
CAATGCTCTATGTTGATTGCATGCACTGTGTGCAGCAGCCATATTCGTGC
GTGTGGGTTTTGGGGTGGTACGGGGGGTAAAAATATGAATTCTTTGAAAC
ATTGCTGAATCTTTGgagaagaaataaaataaatgatACCTATCAGAACT
TGCAAGTTTTGCTGATGACACACGAGTAAAGAAAGGAATCCAAAACATCA
TTGACCAGTTTCACCTACAAAACGACCTTAACAATGTTTATCAATGGTCG
NN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009333XLOC_009333Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016702-exon-sc0000246-1491911889:255051..255302TCONS_00016702-exon-sc0000246-1491911889:255051..255302Clytia hemisphaericaexon
TCONS_00016702-exon-sc0000246-1510915933:255051..255302TCONS_00016702-exon-sc0000246-1510915933:255051..255302Clytia hemisphaericaexon
TCONS_00016702-exon-sc0000246-1575043694:255051..255302TCONS_00016702-exon-sc0000246-1575043694:255051..255302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000246supercontigsc0000246:255051..255302 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.4664	1.41619	0.385925	7.44002	9.27641	13.532	11.1613	15.81	7.0422	4.76644	4.69868	8.92339	5.30133	2.92739	1.4479	2.20092	0	5.79633	3.44123	4.90344	4.54088	4.20813	2.60104	0	6.16693	16.0761	1.7893	0	3.55058	0.403972
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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