TCONS_00016701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016701
Unique NameTCONS_00016701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016701 ID=TCONS_00016701|Name=TCONS_00016701|organism=Clytia hemisphaerica|type=transcript|length=443bp
ATTTGATACATCCACCATTATTTTCATTCACAGTACGAACTCGCGGTAGG
AATTGTTTCAAAGCTTTTCGGATGATTTCATGATTGGAACCGATTTTTTT
CCATACTGATTTGATCTTTCTATTCAATTGTTCTTCGTTTTCGAACGGGT
TGTTTAAACGGCCCCTGTACACCTCCGCCTTGACTGCGTCCCAGAAATAA
TAATCCAGTGGATTGCAGTCAGGTGACCAAGGTGGCCAGTCAGTCTTTTT
TACGAAACGTTTTCGTAATCTTTCTTCCATGAATCCTTGCACCAAGTTAC
TACCGTGTGAAGGGGCACCATCTTGTAANGAAAACTGCTGactaagcatc
acaaaacggaaatcataatggcagagtagcgatgtacaaatttgccatga
agctgtgatctattgacattgaaattgtggatttggcaaagtt
Run BLAST on NCBI

protein sequence of TCONS_00016701-protein

>TCONS_00016701-protein ID=TCONS_00016701-protein|Name=TCONS_00016701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MLSQQFXLQDGAPSHGSNLVQGFMEERLRKRFVKKTDWPPWSPDCNPLDY
YFWDAVKAEVYRGRLNNPFENEEQLNRKIKSVWKKIGSNHEIIRKALKQF
LPRVRTVNENNGGCIK
Run BLAST on NCBI

transcript from alignment at sc0000246:169325..169767

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016701 ID=TCONS_00016701|Name=TCONS_00016701|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at sc0000246:169325..169767 (Clytia hemisphaerica)
aactttgccaaatccacaatttcaatgtcaatagatcacagcttcatggc
aaatttgtacatcgctactctgccattatgatttccgttttgtgatgctt
agtCAGCAGTTTTCNTTACAAGATGGTGCCCCTTCACACGGTAGTAACTT
GGTGCAAGGATTCATGGAAGAAAGATTACGAAAACGTTTCGTAAAAAAGA
CTGACTGGCCACCTTGGTCACCTGACTGCAATCCACTGGATTATTATTTC
TGGGACGCAGTCAAGGCGGAGGTGTACAGGGGCCGTTTAAACAACCCGTT
CGAAAACGAAGAACAATTGAATAGAAAGATCAAATCAGTATGGAAAAAAA
TCGGTTCCAATCATGAAATCATCCGAAAAGCTTTGAAACAATTCCTACCG
CGAGTTCGTACTGTGAATGAAAATAATGGTGGATGTATCAAAT

Coding sequence (CDS) from alignment at sc0000246:169325..169767

>TCONS_00016701 ID=TCONS_00016701|Name=TCONS_00016701|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0000246:169325..169767 (Clytia hemisphaerica)
atgcttagtCAGCAGTTTTCNTTACAAGATGGTGCCCCTTCACACGGTAG
TAACTTGGTGCAAGGATTCATGGAAGAAAGATTACGAAAACGTTTCGTAA
AAAAGACTGACTGGCCACCTTGGTCACCTGACTGCAATCCACTGGATTAT
TATTTCTGGGACGCAGTCAAGGCGGAGGTGTACAGGGGCCGTTTAAACAA
CCCGTTCGAAAACGAAGAACAATTGAATAGAAAGATCAAATCAGTATGGA
AAAAAATCGGTTCCAATCATGAAATCATCCGAAAAGCTTTGAAACAATTC
CTACCGCGAGTTCGTACTGTGAATGAAAATAATGGTGGATGTATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009332XLOC_009332Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016701-proteinTCONS_00016701-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016701-exon-sc0000246-1491911889:169325..169767TCONS_00016701-exon-sc0000246-1491911889:169325..169767Clytia hemisphaericaexon
TCONS_00016701-exon-sc0000246-1510915933:169325..169767TCONS_00016701-exon-sc0000246-1510915933:169325..169767Clytia hemisphaericaexon
TCONS_00016701-exon-sc0000246-1575043694:169325..169767TCONS_00016701-exon-sc0000246-1575043694:169325..169767Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000246supercontigsc0000246:169325..169767 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.611547	0.351415	0.461617	2.01537	1.0223	0.323135	0.194924	0.364971	0.383287	0.972494	0	0.357384	0.133714	1.07222	0.211019	0.517825	0.129169	0.313699	1.73357	1.18056	0.293179	0.64351	0.41319	0.158044	4.45142	2.05812	1.45525	0	0.357268	0.342901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top