TCONS_00016700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016700
Unique NameTCONS_00016700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length704

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016700 ID=TCONS_00016700|Name=TCONS_00016700|organism=Clytia hemisphaerica|type=transcript|length=704bp
TGGGACATCTTTTTTATCACCTTTGAAATAAACTCGATCGTTCTGCGGAT
TAAGCGGGACCTCAAGTGTAAAGTCCTTTTCATCCTGGAATGCACATTTC
TCAATTAGCCGTGGATTCTTTTCGAAACGATCAGCAAGTCTGCCGGAACG
TTCAGTTCGACGTTGGCGGGTAGTTTCACTCATTCTGGGCGTTTTCAAAC
GTTTAAATTGTTTATAACCTCTTCGCTTGACCAATCGTTTTACCGAGCTG
CGACTGATACCAACCATTGGTGCAATTTCTTGAGGGCTTTTGTGCGTTCC
CGGGCTCTCCTCTTGCGAGCAAATCAACATCTCAACGAGGTCCCCGTTTT
CTTCCGTAGTTGCAGTTACCGGTCGGCAAGAACCTGgtcttctttcaaat
gttccAGTTTACTTCATTTTGTTGACTAGGCGCTGAACAGACCTAAGAAC
CCACTTCTTGGTTGGATGTTCTTTCCAGATCTTATAGGCTGTCCAGCCCT
TTTCTTCAAAGTCGTTTTTGATTACTGCCTTGTCTTCACTGGAGAAAACC
ATGTTTCCACGAAGCGTTCAGTCTTGGTTTGAAGGGACCAGCTTTTTCTG
AAGTTCGTTACTTTGGGTATTGTAATGTAATGACTTCAAAAATTACTTTG
AGGTCGTTGCATTGCAAAAGCGGAGAAAAAGATCGCCGCGGACAAAAAGA
AAAC
Run BLAST on NCBI

protein sequence of TCONS_00016700-protein

>TCONS_00016700-protein ID=TCONS_00016700-protein|Name=TCONS_00016700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MLICSQEESPGTHKSPQEIAPMVGISRSSVKRLVKRRGYKQFKRLKTPRM
SETTRQRRTERSGRLADRFEKNPRLIEKCAFQDEKDFTLEVPLNPQNDRV
YFKGDKKDVP
Run BLAST on NCBI

transcript from alignment at sc0000246:167877..168580

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016700 ID=TCONS_00016700|Name=TCONS_00016700|organism=Clytia hemisphaerica|type=transcript|length=704bp|location=Sequence derived from alignment at sc0000246:167877..168580 (Clytia hemisphaerica)
GTTTTCTTTTTGTCCGCGGCGATCTTTTTCTCCGCTTTTGCAATGCAACG
ACCTCAAAGTAATTTTTGAAGTCATTACATTACAATACCCAAAGTAACGA
ACTTCAGAAAAAGCTGGTCCCTTCAAACCAAGACTGAACGCTTCGTGGAA
ACATGGTTTTCTCCAGTGAAGACAAGGCAGTAATCAAAAACGACTTTGAA
GAAAAGGGCTGGACAGCCTATAAGATCTGGAAAGAACATCCAACCAAGAA
GTGGGTTCTTAGGTCTGTTCAGCGCCTAGTCAACAAAATGAAGTAAACTg
gaacatttgaaagaagacCAGGTTCTTGCCGACCGGTAACTGCAACTACG
GAAGAAAACGGGGACCTCGTTGAGATGTTGATTTGCTCGCAAGAGGAGAG
CCCGGGAACGCACAAAAGCCCTCAAGAAATTGCACCAATGGTTGGTATCA
GTCGCAGCTCGGTAAAACGATTGGTCAAGCGAAGAGGTTATAAACAATTT
AAACGTTTGAAAACGCCCAGAATGAGTGAAACTACCCGCCAACGTCGAAC
TGAACGTTCCGGCAGACTTGCTGATCGTTTCGAAAAGAATCCACGGCTAA
TTGAGAAATGTGCATTCCAGGATGAAAAGGACTTTACACTTGAGGTCCCG
CTTAATCCGCAGAACGATCGAGTTTATTTCAAAGGTGATAAAAAAGATGT
CCCA

Coding sequence (CDS) from alignment at sc0000246:167877..168580

>TCONS_00016700 ID=TCONS_00016700|Name=TCONS_00016700|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0000246:167877..168580 (Clytia hemisphaerica)
ATGTTGATTTGCTCGCAAGAGGAGAGCCCGGGAACGCACAAAAGCCCTCA
AGAAATTGCACCAATGGTTGGTATCAGTCGCAGCTCGGTAAAACGATTGG
TCAAGCGAAGAGGTTATAAACAATTTAAACGTTTGAAAACGCCCAGAATG
AGTGAAACTACCCGCCAACGTCGAACTGAACGTTCCGGCAGACTTGCTGA
TCGTTTCGAAAAGAATCCACGGCTAATTGAGAAATGTGCATTCCAGGATG
AAAAGGACTTTACACTTGAGGTCCCGCTTAATCCGCAGAACGATCGAGTT
TATTTCAAAGGTGATAAAAAAGATGTCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009331XLOC_009331Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016700-exon-sc0000246-1491911889:167877..168580TCONS_00016700-exon-sc0000246-1491911889:167877..168580Clytia hemisphaericaexon
TCONS_00016700-exon-sc0000246-1510915933:167877..168580TCONS_00016700-exon-sc0000246-1510915933:167877..168580Clytia hemisphaericaexon
TCONS_00016700-exon-sc0000246-1575043694:167877..168580TCONS_00016700-exon-sc0000246-1575043694:167877..168580Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016700-proteinTCONS_00016700-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000246supercontigsc0000246:167877..168580 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00341	1.31308	1.68972	2.41841	0.48327	0.245498	0.276438	0.43133	0.543571	0.563601	0	0.967416	0.504202	0.396021	0.44164	0.26205	0.322824	0.206422	0.91427	0.679433	0.739524	0.60841	0.0821779	0.19492	3.6407	2.84482	0.196554	0	0.0795506	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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