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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016698 ID=TCONS_00016698|Name=TCONS_00016698|organism=Clytia hemisphaerica|type=transcript|length=1086bp
CAGAGATGAGATACCACAGAATCAACGAACATCCGTCAAATCTTCAGGAA
TCATTAAAATTGCCTTCTTTTTCTACCAGTCGGCTTCCATCATTAGAATT
AACGCTCCAGCGAAATTGGAATACCACATGCCCTTCATAATCGACATTCT
AACTTCCTTCTTTAACGTAAAAATAGACATCGGATCTGCTGATTTAATCA
ACATTTGTCCGTTACAAACCCAAAATGTTGCATTGATCGAATTCGTTCGT
TTGAGTCTAATCTTGGGGATGATTGTCTTGACAATCGTgttattgtttgt
tttgaaCATGTATCGACGCTGTCAAAAAATTCGACACCAGACTTCTCCTT
TCACTGTTCGATTGAAGATAACCTATACCCAGTTACTTGTGATTGGTTAT
GCAAGCATTGCTATGTTTTCTATTCAATCAATCGACTGTATTTATATTGA
GGGTGATTGGTTCATTTTCAACCAAGCTCATTTGAAGTGTTTACAGAGTT
GGCAGATTGTTATAATCTTGCTCATCGTTTCGTGGGTTGTACCTTTTCCC
GTTGCTATGTATTTTGGGAACAAGTTGTTAAGGTCCAGAAAGATCACACC
GAATAAGTTTTTAATGACGCTTATGTTTCCTCCTCTATTACCAATTGTTT
TGATCAGAAGCAATCGCATTGGCTATCATGCATGGACAGATCAACAGCAA
AAAGAGAGAATGGGTATCCTTAATTTACTCAGCGAACCTTTCAGGGAGAG
AGAGGCCAAGGATGATGAAGTTGAGAAAATTATATGGGAGCCTGTGCTCA
TCACACGTCGCTTGATTCTTGTTATCACCATCACGTTTGTACGGTACCCG
ATCATGAAACTGTACCCTACTGGAGTCCTATTAATATTATTTACAATACA
CGACTATCTTGTGCAACCGTTCGTCGAACCTTTCCTCAATTTCGTTCAGT
TGATATCTATGTTGCTTTTGGGAACTCTCGTTCTTTGTAACATGTTCTGG
GCTTTTTCCATGAATATTGACATCCTGGAGAGCCCACAATATTATATATT
TGGGAATGTTTTACTTATTGTTGAGTTGTGTATTTT Run BLAST on NCBI protein sequence of TCONS_00016698-protein >TCONS_00016698-protein ID=TCONS_00016698-protein|Name=TCONS_00016698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
RDEIPQNQRTSVKSSGIIKIAFFFYQSASIIRINAPAKLEYHMPFIIDIL
TSFFNVKIDIGSADLINICPLQTQNVALIEFVRLSLILGMIVLTIVLLFV
LNMYRRCQKIRHQTSPFTVRLKITYTQLLVIGYASIAMFSIQSIDCIYIE
GDWFIFNQAHLKCLQSWQIVIILLIVSWVVPFPVAMYFGNKLLRSRKITP
NKFLMTLMFPPLLPIVLIRSNRIGYHAWTDQQQKERMGILNLLSEPFRER
EAKDDEVEKIIWEPVLITRRLILVITITFVRYPIMKLYPTGVLLILFTIH
DYLVQPFVEPFLNFVQLISMLLLGTLVLCNMFWAFSMNIDILESPQYYIF
GNVLLIVELCI Run BLAST on NCBI transcript from alignment at sc0000246:25644..26729 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016698 ID=TCONS_00016698|Name=TCONS_00016698|organism=Clytia hemisphaerica|type=transcript|length=1086bp|location=Sequence derived from alignment at sc0000246:25644..26729 (Clytia hemisphaerica)
AAAATACACAACTCAACAATAAGTAAAACATTCCCAAATATATAATATTG
TGGGCTCTCCAGGATGTCAATATTCATGGAAAAAGCCCAGAACATGTTAC
AAAGAACGAGAGTTCCCAAAAGCAACATAGATATCAACTGAACGAAATTG
AGGAAAGGTTCGACGAACGGTTGCACAAGATAGTCGTGTATTGTAAATAA
TATTAATAGGACTCCAGTAGGGTACAGTTTCATGATCGGGTACCGTACAA
ACGTGATGGTGATAACAAGAATCAAGCGACGTGTGATGAGCACAGGCTCC
CATATAATTTTCTCAACTTCATCATCCTTGGCCTCTCTCTCCCTGAAAGG
TTCGCTGAGTAAATTAAGGATACCCATTCTCTCTTTTTGCTGTTGATCTG
TCCATGCATGATAGCCAATGCGATTGCTTCTGATCAAAACAATTGGTAAT
AGAGGAGGAAACATAAGCGTCATTAAAAACTTATTCGGTGTGATCTTTCT
GGACCTTAACAACTTGTTCCCAAAATACATAGCAACGGGAAAAGGTACAA
CCCACGAAACGATGAGCAAGATTATAACAATCTGCCAACTCTGTAAACAC
TTCAAATGAGCTTGGTTGAAAATGAACCAATCACCCTCAATATAAATACA
GTCGATTGATTGAATAGAAAACATAGCAATGCTTGCATAACCAATCACAA
GTAACTGGGTATAGGTTATCTTCAATCGAACAGTGAAAGGAGAAGTCTGG
TGTCGAATTTTTTGACAGCGTCGATACATGttcaaaacaaacaataacAC
GATTGTCAAGACAATCATCCCCAAGATTAGACTCAAACGAACGAATTCGA
TCAATGCAACATTTTGGGTTTGTAACGGACAAATGTTGATTAAATCAGCA
GATCCGATGTCTATTTTTACGTTAAAGAAGGAAGTTAGAATGTCGATTAT
GAAGGGCATGTGGTATTCCAATTTCGCTGGAGCGTTAATTCTAATGATGG
AAGCCGACTGGTAGAAAAAGAAGGCAATTTTAATGATTCCTGAAGATTTG
ACGGATGTTCGTTGATTCTGTGGTATCTCATCTCTG Coding sequence (CDS) from alignment at sc0000246:25644..26729 >TCONS_00016698 ID=TCONS_00016698|Name=TCONS_00016698|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at sc0000246:25644..26729 (Clytia hemisphaerica)
AATACACAACTCAACAATAAGTAAAACATTCCCAAATATATAATATTGTG
GGCTCTCCAGGATGTCAATATTCATGGAAAAAGCCCAGAACATGTTACAA
AGAACGAGAGTTCCCAAAAGCAACATAGATATCAACTGAACGAAATTGAG
GAAAGGTTCGACGAACGGTTGCACAAGATAGTCGTGTATTGTAAATAATA
TTAATAGGACTCCAGTAGGGTACAGTTTCATGATCGGGTACCGTACAAAC
GTGATGGTGATAACAAGAATCAAGCGACGTGTGATGAGCACAGGCTCCCA
TATAATTTTCTCAACTTCATCATCCTTGGCCTCTCTCTCCCTGAAAGGTT
CGCTGAGTAAATTAAGGATACCCATTCTCTCTTTTTGCTGTTGATCTGTC
CATGCATGATAGCCAATGCGATTGCTTCTGATCAAAACAATTGGTAATAG
AGGAGGAAACATAAGCGTCATTAAAAACTTATTCGGTGTGATCTTTCTGG
ACCTTAACAACTTGTTCCCAAAATACATAGCAACGGGAAAAGGTACAACC
CACGAAACGATGAGCAAGATTATAACAATCTGCCAACTCTGTAAACACTT
CAAATGAGCTTGGTTGAAAATGAACCAATCACCCTCAATATAAATACAGT
CGATTGATTGAATAGAAAACATAGCAATGCTTGCATAACCAATCACAAGT
AACTGGGTATAGGTTATCTTCAATCGAACAGTGAAAGGAGAAGTCTGGTG
TCGAATTTTTTGACAGCGTCGATACATGttcaaaacaaacaataacACGA
TTGTCAAGACAATCATCCCCAAGATTAGACTCAAACGAACGAATTCGATC
AATGCAACATTTTGGGTTTGTAACGGACAAATGTTGATTAAATCAGCAGA
TCCGATGTCTATTTTTACGTTAAAGAAGGAAGTTAGAATGTCGATTATGA
AGGGCATGTGGTATTCCAATTTCGCTGGAGCGTTAATTCTAATGATGGAA
GCCGACTGGTAGAAAAAGAAGGCAATTTTAATGATTCCTGAAGATTTGAC
GGATGTTCGTTGATTCTGTGGTATCTCATCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016698-exon-sc0000246-1491911889:25644..26729 | TCONS_00016698-exon-sc0000246-1491911889:25644..26729 | Clytia hemisphaerica | exon |
| TCONS_00016698-exon-sc0000246-1510915933:25644..26729 | TCONS_00016698-exon-sc0000246-1510915933:25644..26729 | Clytia hemisphaerica | exon |
| TCONS_00016698-exon-sc0000246-1575043694:25644..26729 | TCONS_00016698-exon-sc0000246-1575043694:25644..26729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000246 | supercontig | sc0000246:25644..26729 . |
Blast
The following BLAST results are available for this feature:
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