TCONS_00016679 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016679
Unique Name	TCONS_00016679
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1167

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000246:89909..95187-

transcript sequence

>TCONS_00016679 ID=TCONS_00016679|Name=TCONS_00016679|organism=Clytia hemisphaerica|type=transcript|length=1167bp
GAAGCTGGTAGTATCAATAAATCATTGTCAGCATTGGGGAATGTCATCAT
GGCACTGGTGGATATAGCGCATGGAAAGACCAGACACGTTCATTATAGAG
ATTCCAAACTGACCTTCATTTTGAGAGATTCATTAGGAGGAAATGCTAAG
ACGTTTATCATCGCCAACGTTCACCCTTCTTCAAGGTGCTTTGGTGAGAC
GCTTTCCACTCTGAATTTTGCACGGCGCGCCAAGATGATCAAAAACAAAG
CTGTTATGAACGAAGACGTCACGGGGAATGTTCGTGAACTTCAACAAGAA
ATTCGTAAGCTGAAAGAGATGTTGTCTCAAGCAAGAGCCGGTATTCCACA
AGAACCTAAGGCAAATCAAGACACACCAACACCTTCATCGTCAGACGATC
ACCAAACAACAACGTCATCGAAAGAAGAGAATGAGGGTGCTTCTCACTGG
AAAGAAATGATGTTGAACGCTATTAATGAACGTGAACAGACGGAACAAGA
AAAACTGGCGTTACAAGAGAAGGTGCAAAAGCTTGAAGACTTGTGCAGTA
AGAAAGAAAAATTCCTCCAATCCACGCGCATGATCTTGAAATTTCGGACA
GAACACATCTCCAAACTTGAACGGACGATCAAGAAGAATGGCTTAAttga
agaaagtgaaaaagacaaagaaattAAATCATTGAAAGACGAAAACAAGA
TATTGCAAGCCAGCATCGATAGTCATCCGGAAGTCAAACGATTCGCCATC
GAAAACCTGGAACTCAGAGCGGAAATCAAAAGACTGAAGTCATTGGATCC
ATCGAACGGAGATTTCACCAAAAACATGGCGGAGAAGCATCGATACACGT
TACATTTAGAACGTCAGCTACGCGATCTCATGTCCACTCAAACGAacgat
ctcgagaaaagtttATCAAGCTCGCAACAAAGTTTGGAAGCATCTAACGC
AGAAGTTGAACGCATGAAAATGGACATTGCGCATGTGCAAGCTAGAGTGG
ATACTTTGCAGAACGAATTGAAAGAATCACGTGAGAACATCCAACAGAAG
ACGGAAGAACTTGTCCACGAGAGGGAACTGATGCGCAAGAAAGAAATGGA
ATCTTCCGCAAACGAGGCTGCTCTCAGGAAAACTAATAATGAACTCGAGA
GACAATTGGAATCACTA

Run BLAST on NCBI

transcript from alignment at sc0000246:89909..95187-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016679 ID=TCONS_00016679|Name=TCONS_00016679|organism=Clytia hemisphaerica|type=transcript|length=5279bp|location=Sequence derived from alignment at sc0000246:89909..95187- (Clytia hemisphaerica)
GAAGCTGGTAGTATCAATAAATCATTGTCAGCATTGGGGAATGTCATCAT
GGCACTGGTGGATATAGCGCATGGAAAGACCAGACACGTTCATTATAGAG
ATTCCAAACTGACCTTCATTTTGAGAGTAAGTTGTGCATTGTTTCGTTTT
ACAACTAAACATGTTTTTGTTTTATTATTTTTTTGTATACTTTTTTTTTA
AATCGTTCTTATAGTTCTTCATTGTAAGATTTTCTTGTTATATTGAAAAC
TTGAATTTGTAAAATACATAAGTTTGACTCTTAGAGTGCGGTCTGGCTGT
ATAAAAAATTCCGCACGATATGAGTATGACAACATTGTACATAAATTAAA
TTTTACACATTTTAAACCTTAAAATTGTTTGATGAATGAAATTGATTTTT
TTGGAAAGCTGAATTTGTCACGACAGAAATGTAGCTATTTCAGTGTAGTT
TTTCATTCATTGTCCTTTTTTTCCAGGATTCATTAGGAGGAAATGCTAAG
ACGTTTATCATCGCCAATGTTCATCCANCCAGGATTCATTAGGAGGAAAT
GCTAAGACGTTTATCATCGCCAACGTTCACCCTTCTTCAAGGTAACTACT
TCACACCCTTACAGTTACAATTAATATAAACATTCTCCATTTTAGAGTTC
AGTAAGCTGGATACAGAAACGTACTCACATATCAAAATTAATCCACAATG
GGCAAAGACTCTCTAAAAAGAGAGTAACGCCTCAATACCAACATCACATT
TATTTTTCACACCCCTCTGTCACAGAACCGCTGGGACCCCCGCCCCACTA
GAAATTTTAAATTTAATGGAAGAAATTGCTCCCAAATCTCACTGGAATTT
TTGAGTTGGGAACAATAGAATTTTTATCCCCATCCCCCATTATTCTGTTT
TTTTTGGAAACCAATTAAATATGTGTGTCATCTCGTTTCTTTCTCGTCAA
ACTCGAGCAGCAGGTTTCTTAATCTGATTGTCTTTAGTTTTATCAAGATA
TTCATTCTTCTTGAATACGACGAAGAGAAGACGAACTGAAAACTTATTTT
TAAAAAACCTCATTTATAAAAAGTTAATATCTAAAAGCATAAGTTAGTGT
TTTTTAAACCGTTACTAGCATCCTCAACACCTACGGTTTTTATTATGATT
ATTTTATTTGTGGTATTTTTATGTGTGATACTCACTATAATGTGCAAAAC
TTTAGAAAAAAGAATTTAAAATCATCTAAAGAAACCATTCAAACGATTGG
TCCTGTATAGACAAACACATTTAAATAATTTGATAAACTTTTATTAGTTC
TATCTTGTACATTATATGAAAGTTGCTAATCCCAAGATTGAGAAAAGAAT
TTCTAAAAACCCTAAAAATTATAGCTTGCTTTTAAAACATGTCTCACATT
CTAAGGATTGCGAGTCGTGTATTGATTGTATTGATGAACCTGTTTAATCT
ACAGGTGCTTTGGTGAGACGCTTTCCACTCTGAATTTTGCACGGCGCGCC
AAGATGATCAAAAACAAAGCTGTTATGAACGAAGACGTCACGGGGAATGT
TCGTGAACTTCAACAAGAAATTCGTAAGCTGAAAGAGATGTTGTCTCAAG
CAAGAGGTAAAGTAAATTCTTATCCTTGTGAAGTCTCTACTCACTACTTA
AACTCGCATGGAGAACACAAATTTGTCGAGTTAAGGAAATTTCGAGTTAT
GGAGTAAGGTTTATAACGTATTGTTAACTGAAGGGAACAAAAAATTTTTC
GAGTTAAAGAGGCTTAATACTGTAATTTTATAGGGCTATTACGCTTTACG
AGAGACTCTGAAATGGCAATAATTAGAGTGTCAATCTTGCCACACAGCCT
CATATTTTATGAAAAGCTACAGACGTAACGGTGTCTGGGAAAAAGCCCCG
ATTATCGCGCTTACACGGTAGATATAAAGGCATTGTTCTATATGGTTTCA
AGAAAGCATGCCGCTTTTAACAGTTTTAACCGGGTGCGTATTAAACCCAC
TTACTTTTAACCTTAATTCATTCTATTCTTTTAGCCGGTATTCCACAAGA
ACCTAAGGCAAATCAAGGTAAAAGATTTCTATTAATCTACGGTATGGATA
TAAGATGGAAAGAATTCAGACTCGTTTTAACATTAATAACTTCACAGCGT
TGCGTATTTTCCAAATGATTGCTTTGATTTCCTGTTGTACTTTAATTTAA
CTGATAATCTCGGAATAATAGCTCAAGAGTGTCATGGAAACGGCTTGTAT
ATCTAGATATTTTATTGGATCTTTCGAAAAATAAATCACATTAATTTAAG
TACATACTTGTTAAACACATTGCAGTGTTACGTATTAAAATGCTCTAATG
TCGGCAACCCCCATATAAACCCGTCAGCATTCTTTAGAGATAAGAATAAT
AGGAAGGTCGAAAATATTTTTCCTTCCTGGCTGTGATTCTGACCTTGCTT
TTATTCCCTCTCTAAAAAGGGTGTCAGAACTAGAAGAGTGTTTTCGACAT
TAGACTGTCCATTTTCTACATTTCCCTTCTTCTTCACTTTATCAGACACA
CCAACACCTTCATCGTCAGACGATCACCAAACAACAACGTCATCGAAAGA
AGAGAATGAGGGTGCTTCTCACTGGAAAGAAATGATGTTGAACGCTATTA
ATGAACGTGAACAGACGGAACAAGAAAAACTGGTATGGAGTAAACACAGA
GTTTACGAATCTGTGTTTTTCAGCGGTTAGCTTTTGATTTGTCTAGATCT
TGACTGACTGAGGTGGACGGTAAATCAGCACTTTGCTGTTCTCGATTTTA
CGGGTAACAACTCGCTAATGTTGTCAATTGAACAAGGGGTTTTTGTAACA
TTTACACAAAGCAAATTCCCATNTTACGGGTAACAACTCGCTAATGTTGT
CAATTGAACAAGGGGTTTTTGTAACATTTATACAAAGCAAATTCCCAATT
ACTATAAGAAAAACTCAGCAAAAACAAAGTAAAACCCTGGAAAATGGTTA
ACCTTTGCTTTTACTTTCCACAGGCGTTACAAGAGAAGGTGCAAAAGCTT
GAAGACTTGTGCAGTAAGAAAGAAAAATTCCTCCAATCCACGCGCATGAT
CTTGAAATTTCGGACAGAACACATCTCCAAACTTGAACGGACGATCAAGA
AGAATGGCTTAATTGAAGAAAGTGAAAAAGACAAAGAAATTGTGAGTGAT
CCATTCATTTTCTTTATCTGAAGAAAAGACGTCCTTTTTTTTAAGTGTTG
TCTGGCTTCAATTCCGCCCTTTATGATTGTAATTTTACGATAACCATTTT
CATGCGTTGTCATTTTTTGCTAAGTATATTGAACGATTTTAAACTCTNTT
TACTTTCCACAGGCGTTACAAGAGAAGGTGCAAAAGCTTGAAGACTTGTG
CAGTAAGAAAGAAAAATTCCTCCAATCCACGCGCATGATCTTGAAATTTC
GGACAGAACACATCTCCAAACTTGAACGGACGATCAAGAAGAATGGCTTA
ATTGAAGAAAGTGAAAAAGACAAAGAAATTGTGAGTGATCCATTCATTTT
CTTTATCTGGAGAAAAGACGTCCTTTTTTTTAAGTGTTGTTTGGCTTCAA
TTCCGCCCTTTATGATTGTAATTTTACGATAACCATTTTCATGCGTTGTC
ATTTTTTGCTAAGTATATAATGAACGATTTTAAACTACACCTTCCATTTC
ATTTTTGCCATCATTTTTGTCGAACTAGCATCGTTTTCGAAAGAAAGGGC
TGCGAGAAAAAAGTCCTTTTTACGTGCTTGGTAAGCTCAGAATAAGTTAC
ATCTTTATCAGTAACATCAATGTAACGTCACTTTATGCTGTATTTTGCTA
CAAAAGTATTAAGGTCATGTTCCGTGTAGCTTTTTATGGTTGCCTAACTA
CATGCACGGTTTAATTATTACATAAATCAAATGAATTAAGGGTTTAAAGC
TCATTGGTTTTCAATATTTCTTGCACAGTAAAACTTGCAACTACATATTA
ATTGATTTTATTACAGAAATCATTGAAAGACGAAAACAAGATATTGCAAG
CCAGCATCGATAGTCATCCGGAAGTCAAACGATTCGCCATCGAAAACCTG
GAACTCAGAGGTAATTCTGAGGAGTTAAAAATATTAAAGGTTTTGTTTTT
AAATACGATATCGTGATATCGTTTGCTTTGCTTACTCATCAATTTTTATT
TACAAGCTTTTTGATATTGAATTGACACGGATGTGGAGCAAGATTGTTCA
GAAAGAGGGAAAAAATATTTTTTTGCTTATATCAACACAATATAAAAATA
TGCAGACACTGTGCTGGTATGAAACATGTGTCTGATATGAAACGGGAACA
CTTGTAAAAATAAAACCTTTAAATGTAATTTTGTCACAAACCTCACAACT
TGCGTAAGAACTAATTAATCTATTTGAAACTTGTCAAAATTGTAATTCAA
ATAAAGGTACTATAATTGTTGGAAAGCTTACTCGTGAATATGTAATCATA
AAAAACTGCGCTTTTGTCGTATTCTTATCTAATTTTCTGAAAACTCATTT
TCAGCGGAAATCAAAAGACTGAAGTCATTGGATCCATCGAACGGAGATTT
CACCAAAAACATGGCGGAGAAGCATCGATACACGTTACATTTAGAACGTC
AGCTACGCGATCTCATGTCCACTCAAACGAACGATCTCGAGAAAAGTTTA
TCAAGCTCGCAACAAAGTTTGGAAGCATCTAACGCAGAAGTTGAACGCAT
GAAAATGGACATTGCGCATGTGCAAGCTAGAGTGGATACTTTGCAGAACG
AATTGAAAGAATCACGTGAGAACATCCAACAGAAGACGGAAGAACTTGTC
CACGAGAGGGAACTGATGCGCAAGAAAGAAATGGAATCTTCCGCAAACGA
GGCTGCTCTCAGGAAAACTAATAATGAACTCGAGGTATTAATTAAAACAG
TAGAAGTAACACTACCGAAACTTTGGTACCGCGGAGGCTCAACAACTCGA
AGAAGGCTACAAACCCTCGTAAACCTCATTCCCCTTGCACGTGCATATTT
GATTTATAGAGACTACTGCAAATAGTATTCTTTAATGTTACTTTACTCTT
TTCCTGAGTCTAATATCTTACTGTTTACTGAAAACTCGAAACATTATCAA
GACCAGACAAAAACTGACCGAAGCGCTCTACTGCTAGTAAGTTTTATACT
GAATTTTTTGGCAGCTTTCAAAGGTTTTTATTTTATTAATTTTTTCTTCT
ATCTTTTTCAGAGACAATTGGAATCACTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009321	XLOC_009321	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000246	supercontig	sc0000246:89909..95187 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.265254	0.0804563	0	0	0	2.12851e-05	0	0	0.922081	0	0	0	0	0.00197609	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00016679 vs. Swiss-Prot (Human)
Match: KIF15 (Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF15 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.855e-70
Identity = 167/391 (42.71%), Postives = 239/391 (61.13%), Query Frame = 1

Query:    1 EAGSINKSLSALGNVIMALVDIAHGKTRHVHYRDSKLTFILRDSLGGNAKTFIIANVHPSSRCFGETLSTLNFARRAKMIKNKAVMNEDVTGNVRELQQEIRKLKEMLSQARAGIPQEPKANXXXXXXXXXXXXXXXXXXKEENEGASHWKEMMLNAINEREQTEQEKLALQEKVQKLEDLCSKKEKFLQSTRMILKFRTEHISKLERTIKKN-GXXXXXXXXXXXXXXXXXNKILQASIDSHPEVKRFAIENLELRAEIKRLKSLDPSNGDFTKNMAEKHRYTL-HLERQLRDLMSTQTNDL-EKXXXXXXXXXXXXXXXVERMKMDIAHVQARVDTLQNELKESRENIQQKTEELVHERELMRKKEMESSANEAALRKTNNELERQLES 1164
            EAG+IN+SLS LG VI ALVD+ +GK RHV YRDSKLTF+LRDSLGGNAKT IIANVHP SRCFGETLSTLNFA+RAK+IKNKAV+NED  GNV +LQ E+++LKE L++  +G  Q P  +               T  K++     +++E ML      +++EQEK +L EKV +LEDL  KKEKF+QS +MI+KFR + I +LE+  K++ G     E+D+ +  L++E + L+  I+ HP V ++A+EN  LR E +RL+ L+P      K   E    T+  LE+   ++   + +D  ++  S   Q      A  E++K  +  +Q  ++           N +Q+ EE    +EL RK+++E  +   +L+K N  LE  LE+
Sbjct:  284 EAGNINRSLSCLGQVITALVDVGNGKQRHVCYRDSKLTFLLRDSLGGNAKTAIIANVHPGSRCFGETLSTLNFAQRAKLIKNKAVVNEDTQGNVSQLQAEVKRLKEQLAELASG--QTPPES-------------FLTRDKKKTNYMEYFQEAMLFF----KKSEQEKKSLIEKVTQLEDLTLKKEKFIQSNKMIVKFREDQIIRLEKLHKESRGGFLPEEQDRLLSELRNEIQTLREQIEHHPRVAKYAMENHSLREENRRLRLLEP-----VKRAQEMDAQTIAKLEKAFSEISGMEKSDKNQQGFSPKAQKEPCLFANTEKLKAQLLQIQTELN-----------NSKQEYEEF---KELTRKRQLELESELQSLQKANLNLENLLEA 636

The following BLAST results are available for this feature:

BLAST of TCONS_00016679 vs. Swiss-Prot (Human)

BLAST of TCONS_00016679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KIF15	5.855e-70	42.71	Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF1...	[more]

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TCONS_00016679 (transcript) - C. hemisphaerica