TCONS_00016648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016648
Unique NameTCONS_00016648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016648 ID=TCONS_00016648|Name=TCONS_00016648|organism=Clytia hemisphaerica|type=transcript|length=324bp
TAAGAATGAAGCAAACAGTACCTCTCTTGAActtcatttttctctttatt
gagTTCATCAACCTCCATTTCAAGGACTTGACATCGTTTCTCAAGAACGT
CTTTTCCACTCTCGATAATCTCAAACTCACTACAACGTCGTTTAAGCTCA
GCAATCTCATTATCCTGTACTGCTTGGCATTGGTCAAACTCCGTCAGTGC
TGTCAATTGTTCACGCGATTCGTTCATTAGGTCTGCTTCGTCTAGATCAG
TGTATGAGGACACGCTGTGTTCTTTCGAGGATAAGGTCTCTTGAAGTATA
GTTATCTAGAGACAGAAGATGATA
Run BLAST on NCBI

transcript from alignment at sc0000246:79101..79478+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016648 ID=TCONS_00016648|Name=TCONS_00016648|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at sc0000246:79101..79478+ (Clytia hemisphaerica)
TAAGAATGAAGCAAACAGTACCTCTCTTGAActtcatttttctctttatt
gagTTCATCAACCTCCATTTCAAGGACTTGACATCGTTTCTCAAGAACGT
CTTTTCCACTCTCGATAATCTCAAACTCACTACAACGTCGTTTAAGCTCA
GCAATCTCATTATCCTGTACTGCTTGGCATTGGTCAAACTCCGTCAGTGC
TGTCAATTGTTCACGCGATTCGTTCATTAGGTCTGCTTCGTCTAGATCAG
TGTATGAGGACACGCTGTGTTCTTTCGAGGATAAGGTCTCTTGAAGTATA
GTTATCTAGAGACAGAAGATGATACAGAAAGAGGATAAGGTCTCTTGAAG
TATAGTTATCTAGAGACAGAAGATGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009311XLOC_009311Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016648-exon-sc0000246-1491911889:79101..79385TCONS_00016648-exon-sc0000246-1491911889:79101..79385Clytia hemisphaericaexon
TCONS_00016648-exon-sc0000246-1510915933:79101..79385TCONS_00016648-exon-sc0000246-1510915933:79101..79385Clytia hemisphaericaexon
TCONS_00016648-exon-sc0000246-1575043694:79101..79385TCONS_00016648-exon-sc0000246-1575043694:79101..79385Clytia hemisphaericaexon
TCONS_00016648-exon-sc0000246-1491911889:79440..79478TCONS_00016648-exon-sc0000246-1491911889:79440..79478Clytia hemisphaericaexon
TCONS_00016648-exon-sc0000246-1510915933:79440..79478TCONS_00016648-exon-sc0000246-1510915933:79440..79478Clytia hemisphaericaexon
TCONS_00016648-exon-sc0000246-1575043694:79440..79478TCONS_00016648-exon-sc0000246-1575043694:79440..79478Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000246supercontigsc0000246:79101..79478 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.9539	14.5046	6.89296	4.11892	34.2248	25.8106	3.02104	4.73343	8.00598	8.73246	8.17291	7.09176	4.38977	1.01019	11.8291	14.3882	15.7241	18.0463	0	0	2.29406	5.86131	19.5071	13.9153	24.642	16.0054	2.16106	3.11027	11.8336	9.42145
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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