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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016617 ID=TCONS_00016617|Name=TCONS_00016617|organism=Clytia hemisphaerica|type=transcript|length=2307bp
CTGAGGACAGCCATTACTTCTGAGAATGGATTCACTATTGAAAAACGCAG
AAGTAGACGACATCATACCGAGAAACTAGCAGATCTTGACTTTGCAGACG
ATATATCTCTTCTAAATGAAACAGTAGTCGAAGCTGAAAACCTCCTACAC
AAGCTAGATATATCAACTCAATCTATCGGTCTCTTTCTCAAAGCTAAGAA
AACCAAATATATGCACATCAACCCTACAACAAACGATGGCATCCAATCTG
TTAATGGTATCGCCCTGGAAAAGGTTGACGATTTCAAATACCTTGGAGCT
TACACAAACATTAACCATGACATAGAGATTTCACTCCTGTCATGGTTACT
AACGTCTACTCTGACAAAGAAATTAGACGGAGCgtgaaaagtaaaaaaca
tcCAGCCTAATGTCCACATTACTAAAAAAGTGTTGTACGGCAAGCTGCAC
CAATTGAGCAGTCTTATCCAGAAAAGAAGATTGCAGTTAGCAGGTCACGT
CATCAGAGGAAATGAGCCGGCATCTAAACTTCTCCTTTGGCAGCCAACAT
TCTTAACAAAGAAGAGAGGTAGTCCACACAAGACACTACTCAAAGTCTTA
GAACAAGAGACTGGACTTGACAAAGGTGAGATGTTTCGTTTGGCACACAA
CAGGGTCAGATGGAAAGACATGGTCATGTCATCACTTTCAAGTGGATGAT
TTATGTATGTATGTTAATGAGTTCCCCTTCGCAGGAATTCCAAAGTTCTC
TTCTATCCCGTTTGGTTGCTGGAGTATTTGCGGTCTTTCTTTCCATGCTT
CGTCCAGGTTAACCCTGAATTGGAACACGGTTTCGGATTTGCCGACGTCG
GCTGGTAGATTATTCCAAGGATTGATTGTTCGATAATAAAATGAATTGAA
CTGTGCACCTCTCACACCATCTTTTGGGATTCGCTCAACGAGTTGAAGTC
GTGTTCATGGTTCCTTGTGACACGCATCTGGTGCTGAAAGGTTTTGTGTA
GTGAAGATCTATCGTAGACATTGAAATGTTTGTATATTTCAATCATGTCG
TTCCGCTCTCGTCTATATGCAAGCGTTGGAAGATCGAGTCTGCGCGAAGA
TCGGAAATATATCGGATCAAGAGAACAATGAAACCACAAAGTGTTAACCA
CTTGTCAATAAACCACCCCGATCCTAAATCAGCAGACCCTCACTTCAGTC
AAACCTCACAGTAAAACCGAAGCCAGCAAGTAAACTTTTAGTTATTTATA
CAGGACGCCGAATACTCGACCTATCGCCAGAGCCCTCGATTTGCGTTAAC
CAGGTGGACACCGCGCGGAGGGAGAGGGTTGACTTCTGAGGAGAGGCTAT
CCAATGAGGCGCCGGACGAGCATACATCCAGTACGTGTCCATCACTCAGC
TTGACCACCCAAACCATGCTTAATCTTGAGCATTGCTATGAATAATGTAT
TTGTCTGAATAAACAAAGAGATAtaattaaaaacataattaaAAATGTGC
GAAATCCGTGATTTTTAACATATTTCTGTCATGTATGTCTTGAAAAATTC
TTCTTAGTCAGATTTGGCGATATTTTTGGTATTGCTAACTGTGCCTGACT
ATGCATTTCCGTACAAGAAATTAGGAAAAATCAAACACAGTGTCATTCAT
GGCACCCTTACAACAACACTGGTACCTCAACATGATTGGTGGTCTCGATA
CtgagaaaaatcaatttcaagtAACTTTCAAGAAATTAATTACTCCAGAC
TTCAGATATTACCTATGAATAAATTAGCACATAATAACGGTGCGAATCTT
CCAGCGCAACATCCTATAAGTATAAGCTCAATTATcaggattttatttcc
ataatacGGAACAGATAATTTTGGGCCCTAATTGCTGGAGTTTTCAATAT
GCTGAACTGAAACAATAGGTCTTTGAAATCTCCCCAAACGACTGTTACTT
CCCATGTTAAATAATATTACActcttttcctgtatccttttaaaGCTATC
ATCAGGGCGAGCTACTAGGATTGGGCATAGTATTCCAAAATTTTGAGTat
tcaaataatttctttaattaAAACTAAATTGTTTGATGGAGTTTGATTAA
TTCGATCAGTTTGAAAAGTTCGATTGATCAGGCCTGGTTTTGTCAAATTT
GAGAAGGATCTTTAGAGCAAACTGTTGTAGTATGCTAAAAGAAAAATCCG
ATTTGATGACCCGCTCATTCAAGCGAACctgtcgaaccaatcaaacaatc
aaTCTAATCGAACTTAGTATGCTAAAAGAAAAATTCGATTTGATGACCCG
CTTATTC Run BLAST on NCBI protein sequence of TCONS_00016617-protein >TCONS_00016617-protein ID=TCONS_00016617-protein|Name=TCONS_00016617-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
LRTAITSENGFTIEKRRSRRHHTEKLADLDFADDISLLNETVVEAENLLH
KLDISTQSIGLFLKAKKTKYMHINPTTNDGIQSVNGIALEKVDDFKYLGA
YTNINHDIEISLLSWLLTSTLTKKLDGA Run BLAST on NCBI transcript from alignment at sc0000243:6073..8379 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016617 ID=TCONS_00016617|Name=TCONS_00016617|organism=Clytia hemisphaerica|type=transcript|length=2307bp|location=Sequence derived from alignment at sc0000243:6073..8379 (Clytia hemisphaerica)
GAATAAGCGGGTCATCAAATCGAATTTTTCTTTTAGCATACTAAGTTCGA
TTAGAttgattgtttgattggttcgacagGTTCGCTTGAATGAGCGGGTC
ATCAAATCGGATTTTTCTTTTAGCATACTACAACAGTTTGCTCTAAAGAT
CCTTCTCAAATTTGACAAAACCAGGCCTGATCAATCGAACTTTTCAAACT
GATCGAATTAATCAAACTCCATCAAACAATTTAGTTTtaattaaagaaat
tatttgaatACTCAAAATTTTGGAATACTATGCCCAATCCTAGTAGCTCG
CCCTGATGATAGCtttaaaaggatacaggaaaagagTGTAATATTATTTA
ACATGGGAAGTAACAGTCGTTTGGGGAGATTTCAAAGACCTATTGTTTCA
GTTCAGCATATTGAAAACTCCAGCAATTAGGGCCCAAAATTATCTGTTCC
gtattatggaaataaaatcctgATAATTGAGCTTATACTTATAGGATGTT
GCGCTGGAAGATTCGCACCGTTATTATGTGCTAATTTATTCATAGGTAAT
ATCTGAAGTCTGGAGTAATTAATTTCTTGAAAGTTacttgaaattgattt
ttctcaGTATCGAGACCACCAATCATGTTGAGGTACCAGTGTTGTTGTAA
GGGTGCCATGAATGACACTGTGTTTGATTTTTCCTAATTTCTTGTACGGA
AATGCATAGTCAGGCACAGTTAGCAATACCAAAAATATCGCCAAATCTGA
CTAAGAAGAATTTTTCAAGACATACATGACAGAAATATGTTAAAAATCAC
GGATTTCGCACATTTttaattatgtttttaattaTATCTCTTTGTTTATT
CAGACAAATACATTATTCATAGCAATGCTCAAGATTAAGCATGGTTTGGG
TGGTCAAGCTGAGTGATGGACACGTACTGGATGTATGCTCGTCCGGCGCC
TCATTGGATAGCCTCTCCTCAGAAGTCAACCCTCTCCCTCCGCGCGGTGT
CCACCTGGTTAACGCAAATCGAGGGCTCTGGCGATAGGTCGAGTATTCGG
CGTCCTGTATAAATAACTAAAAGTTTACTTGCTGGCTTCGGTTTTACTGT
GAGGTTTGACTGAAGTGAGGGTCTGCTGATTTAGGATCGGGGTGGTTTAT
TGACAAGTGGTTAACACTTTGTGGTTTCATTGTTCTCTTGATCCGATATA
TTTCCGATCTTCGCGCAGACTCGATCTTCCAACGCTTGCATATAGACGAG
AGCGGAACGACATGATTGAAATATACAAACATTTCAATGTCTACGATAGA
TCTTCACTACACAAAACCTTTCAGCACCAGATGCGTGTCACAAGGAACCA
TGAACACGACTTCAACTCGTTGAGCGAATCCCAAAAGATGGTGTGAGAGG
TGCACAGTTCAATTCATTTTATTATCGAACAATCAATCCTTGGAATAATC
TACCAGCCGACGTCGGCAAATCCGAAACCGTGTTCCAATTCAGGGTTAAC
CTGGACGAAGCATGGAAAGAAAGACCGCAAATACTCCAGCAACCAAACGG
GATAGAAGAGAACTTTGGAATTCCTGCGAAGGGGAACTCATTAACATACA
TACATAAATCATCCACTTGAAAGTGATGACATGACCATGTCTTTCCATCT
GACCCTGTTGTGTGCCAAACGAAACATCTCACCTTTGTCAAGTCCAGTCT
CTTGTTCTAAGACTTTGAGTAGTGTCTTGTGTGGACTACCTCTCTTCTTT
GTTAAGAATGTTGGCTGCCAAAGGAGAAGTTTAGATGCCGGCTCATTTCC
TCTGATGACGTGACCTGCTAACTGCAATCTTCTTTTCTGGATAAGACTGC
TCAATTGGTGCAGCTTGCCGTACAACACTTTTTTAGTAATGTGGACATTA
GGCTGgatgttttttacttttcacGCTCCGTCTAATTTCTTTGTCAGAGT
AGACGTTAGTAACCATGACAGGAGTGAAATCTCTATGTCATGGTTAATGT
TTGTGTAAGCTCCAAGGTATTTGAAATCGTCAACCTTTTCCAGGGCGATA
CCATTAACAGATTGGATGCCATCGTTTGTTGTAGGGTTGATGTGCATATA
TTTGGTTTTCTTAGCTTTGAGAAAGAGACCGATAGATTGAGTTGATATAT
CTAGCTTGTGTAGGAGGTTTTCAGCTTCGACTACTGTTTCATTTAGAAGA
GATATATCGTCTGCAAAGTCAAGATCTGCTAGTTTCTCGGTATGATGTCG
TCTACTTCTGCGTTTTTCAATAGTGAATCCATTCTCAGAAGTAATGGCTG
TCCTCAG Coding sequence (CDS) from alignment at sc0000243:6073..8379 >TCONS_00016617 ID=TCONS_00016617|Name=TCONS_00016617|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000243:6073..8379 (Clytia hemisphaerica)
tcacGCTCCGTCTAATTTCTTTGTCAGAGTAGACGTTAGTAACCATGACA
GGAGTGAAATCTCTATGTCATGGTTAATGTTTGTGTAAGCTCCAAGGTAT
TTGAAATCGTCAACCTTTTCCAGGGCGATACCATTAACAGATTGGATGCC
ATCGTTTGTTGTAGGGTTGATGTGCATATATTTGGTTTTCTTAGCTTTGA
GAAAGAGACCGATAGATTGAGTTGATATATCTAGCTTGTGTAGGAGGTTT
TCAGCTTCGACTACTGTTTCATTTAGAAGAGATATATCGTCTGCAAAGTC
AAGATCTGCTAGTTTCTCGGTATGATGTCGTCTACTTCTGCGTTTTTCAA
TAGTGAATCCATTCTCAGAAGTAATGGCTGTCCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016617-exon-sc0000243-1491911889:6073..8379 | TCONS_00016617-exon-sc0000243-1491911889:6073..8379 | Clytia hemisphaerica | exon |
| TCONS_00016617-exon-sc0000243-1510915933:6073..8379 | TCONS_00016617-exon-sc0000243-1510915933:6073..8379 | Clytia hemisphaerica | exon |
| TCONS_00016617-exon-sc0000243-1575043694:6073..8379 | TCONS_00016617-exon-sc0000243-1575043694:6073..8379 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000243 | supercontig | sc0000243:6073..8379 . |
Blast
The following BLAST results are available for this feature:
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