TCONS_00016616 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016616
Unique NameTCONS_00016616
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016616 ID=TCONS_00016616|Name=TCONS_00016616|organism=Clytia hemisphaerica|type=transcript|length=394bp
TGACTTCACAGATGTACGGTAAAACACGTATGCATGGAAGGTCGTTCAAA
CATTTGTAATTGGCGGGACCAAGTAACTCAACACAGTCTTCACCATATCG
AAAATTGTTTGGTTCATGTGGGCACCATTTCTTGAATCCTGCGACATTTG
AACCATCCCATCTGAAGACTTTTTCAGAAGCTTTGTCGTTCAATCCAACC
CAAGCGGAACGAATGTTATAGTGCtgtaatttggcaACCAAAAAGTGGTG
CTCTCGTTGATTATTGATAGTTGCCAAGAAACCTCCAAATTTAGCGCATG
CGTGTTTAGCTTGGTGCATATTCAATGGTGGTGACCTTACAAGGAGATAA
GTCGACCTGTACGATCTTATGATCACTGTtggtttttgatgaaa
Run BLAST on NCBI

transcript from alignment at sc0000243:403911..404582-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016616 ID=TCONS_00016616|Name=TCONS_00016616|organism=Clytia hemisphaerica|type=transcript|length=672bp|location=Sequence derived from alignment at sc0000243:403911..404582- (Clytia hemisphaerica)
TGACTTCACAGATGTACGGTAAAACACGTATGCATGGAAGGTCGTTCAAA
CATTTGTAATTGGCGGGACCAAGTAACTCAACACAGTCTTCACCATATCG
AAAATTGTTTGGTTCATGTGGGCACCATTTCTTGAATCCTGCGACATTTG
AACCATCCCATCTGAAGACTTTTTCAGAAGCTTTGTCGTTCAATCCAACC
CAAGCGGAACGAATGTTATAGTGCATATGTGTAAATAAGAATGAGAAAAC
TTTGAGCTATTATAGAATAAAGTGAAGTGGCTAACTTAAAGCCAAATCAT
TTAATGATACAAGTTGCCCAATATCAGGGTAAATCGTCATATTGTTGACT
GATTAAAATTAGCTTTGAGAAGCAAGTTAGGGCTATTTTATGCCTAAAGA
CTATTTTGTCCCGGCCTCTGGCAATTTAGAATTAGCACCCTGTCTAAAGA
CATTGATTTTTAATCTTTATTTTCAATGTTTTGCATTTTGTATTCTACTT
ACTGTAATTTGGCAACCAAAAAGTGGTGCTCTCGTTGATTATTGATAGTT
GCCAAGAAACCTCCAAATTTAGCGCATGCGTGTTTAGCTTGGTGCATATT
CAATGGTGGTGACCTTACAAGGAGATAAGTCGACCTGTACGATCTTATGA
TCACTGTTGGTTTTTGATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009286XLOC_009286Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016616-exon-sc0000243-1575043694:404359..404582TCONS_00016616-exon-sc0000243-1575043694:404359..404582Clytia hemisphaericaexon
TCONS_00016616-exon-sc0000243-1575043694:403911..404080TCONS_00016616-exon-sc0000243-1575043694:403911..404080Clytia hemisphaericaexon
TCONS_00016616-exon-sc0000243-1510915933:404359..404582TCONS_00016616-exon-sc0000243-1510915933:404359..404582Clytia hemisphaericaexon
TCONS_00016616-exon-sc0000243-1510915933:403911..404080TCONS_00016616-exon-sc0000243-1510915933:403911..404080Clytia hemisphaericaexon
TCONS_00016616-exon-sc0000243-1491911889:404359..404582TCONS_00016616-exon-sc0000243-1491911889:404359..404582Clytia hemisphaericaexon
TCONS_00016616-exon-sc0000243-1491911889:403911..404080TCONS_00016616-exon-sc0000243-1491911889:403911..404080Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:403911..404582 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.84022	0.466918	0.928084	0.424863	0	0	0.493105	1.61574	188.963	108.692	5.56668	55.0436	0	0	1.24686	0.11686	0	0.147557	0.203857	0	0	0	0.781	0.552857	0	0.735031	0	0.987705	0.212852	0.216862
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
Blast
[Close]
BLAST of TCONS_00016616 vs. Swiss-Prot (Human)
Match: MRC2 (C-type mannose receptor 2 OS=Homo sapiens GN=MRC2 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.013e-16
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = -1 
Query:    5 HQAKHACAKFGGFLATINNQREHHFLVAKLQHYNIRSAWVGLNDKASEKVFRWDGSNVAGFKKWCPHEPNNFRYG-EDCVELLGPANYKCLNDLPCIRVLPYICE 316
             ++K AC + GG L +I++  E  F+  +++   +   W+GLND   +  F W   ++  F  W P EPNNFR   EDCV + GP      ND PC + LP IC+
Sbjct:  404 QESKKACLRGGGDLVSIHSMAELEFITKQIKQ-EVEELWIGLNDLKLQMNFEWSDGSLVSFTHWHPFEPNNFRDSLEDCVTIWGPEGR--WNDSPCNQSLPSICK 505
The following BLAST results are available for this feature:
BLAST of TCONS_00016616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRC23.013e-1637.14C-type mannose receptor 2 OS=Homo sapiens GN=MRC2 ... [more]
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