TCONS_00016612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016612
Unique NameTCONS_00016612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016612 ID=TCONS_00016612|Name=TCONS_00016612|organism=Clytia hemisphaerica|type=transcript|length=2238bp
aaaaaaagaaaaatacgtCAAAACCAATAAATCTACATATTCAACAAATA
ATCCAATACATTTTATGGGAAAATAGTGCCGAACACGGAATCAAGCAGAA
TGTCCTCGTGTAATGGATCACGATATGGATTCCAAACCGTCGTTAACTGC
GACGTTGGTGATCTATCGGGAAGTTATCGATCCTTCGTAGAAGCGACATC
CTTCATAACGTTTGCTATCGGGGTCGCCTTGAATACCGGAATCCTAACCG
TTTCAATATCCATGTACCCCAACATCGATACATTCGATGCGCTATTGATG
AATCTTACTTTTGGTGAACTTCTTAGCTCATTTGGATTATCTTTTATGTT
ATTTGTGGAGCTGACAACTAGTATTGCACCAATAGGAGATCACGGTTGCC
AATTCTTAACATGGTTAGATTTAGCTTCAGTTACTGTAACTGTTACAACA
ATCGTAGcattatttttcgaattttacaAAGTTGTTTATAATAGTGCTCG
TCCAAagaaaatgagaccttataAATTATGGGCATTGATTTTATTGTTAT
GGATTATTGCGTCGANTAATAGTGCTCGTCCAAagaaaatgagaccttat
aAATTATGGGCATTGATTTTATTGTTATGGATAATTGCGTCGATTCCAGG
AATGCCGTACATGGCCACTGCAAAAATGGGCACTGATGGGTTTTGTCATA
TGGGACGCTGGTCAGATGATGCCGAAGTCCTATTCATCTGTGCTATGATT
TTCTTTCAAGTTTTGATCCCGTTAGCTTTAATTGTTTACTTTTTCGTACG
TTCGCTACTTGCTCTACGCGTGGATACCATGGGTGGGACAATTTTGAGTG
AAGAAGCAAACCCAGGGTCAGAAGCAACCTTACAACGTGGTATTTTAAAA
CGTAAATTTCGTATGATTGGTTACATGGCATTGATTTTCTACATGATTTT
GATTACAGTTAGTATTATTGAACTTTCCTTGGCTTTGAACTTGAATGACA
TTGACTCGAATTTCGTAAAACGTGCTCGAGTACGTGAATTAGCATCTTTG
TTACTCTGCTTGAAAACGGTATTCATTCCATTGTTATTTGTTTTCAATGA
TAAGTTGATCAATCGTTTCAAGAAGATTTGTTGTTTGTGGCGTCGTGACC
CTGATATTTACAACAGTTTAAGGTATGATGTGTACCAACAGACTGTATCC
GAGGGACAAGGGGACGGGTTCAATGATCGTTCAAATGAAGAAGAGATGGC
ACTGGCTAATGAAGAGTTTGGTGAAACTGAAAGAGACGATGTTGCCATTT
TAGATTCCAGCTAAGGAGTATCATTAAATCAATGAATGAAAGGTTAAAGT
GGGAAGAATCAAAATGAGACTTCATTGTTCCAGCTAAGAAGTATCATTTT
AAAtcaatgaataaaaaattaaatgtgAAGAGAATCAAAAGGAGTTGCGC
CATTAAAAATGGGACTTCATTGTTCAGGAAGGAGCCAAGAATCCAAAGAT
AACGATTTTGCTTACTCGAAGTGAAACTTTGTGGAACTTATTAGCTATAA
TAACATGTTATAAACTTCATAGTTGCTATTGAAAGAACATTATTTCTGCA
AGGGACAAAGATGATGATATTTTATGTcctgcaaaatattatgtttcTAA
CCTAGAAGAACTAATATGGACCAAGAATATTTATGACAATAAATGTATTG
ATTACAATAATAGTACATTGGACCCTAAATCACCAGAGAACTGCCAGAGT
TAATTATCTTATGAATGAACTTAGACTTATAATTATCTCACCCATAAAAG
AAGaatatgatttttaatttttgacaatCAAAGCCCAATATACTGTATGA
ATGAAAGTGTTTCCGAATAAAAAATCATAGCAATtgtcagctttctaatg
taaaTTCTTTTGGTCCAAATCTTGCAACCATTTCTTCCATCTATTGTCTA
CAATTTAAACCTTTTTAAGTACTTTAGGTCTTACGTTCTTATATATTTAT
TCCTTTTTATAACATTCTTTTTCTATatcaaccaaaaaaaaaaactttaa
aaaaatatttaaattttaggaaaattttaatttatcaaaaaattgaattt
aaaatccggacattttttggaaaaaataaagctTCTTTCAAAATGTATAT
CTTCCTCCCTCcgtttacaatttgttttcttttactcatgatatgcacca
tagCAATGTCTCCGCGGACcaaagctgattggttgaaa
Run BLAST on NCBI

protein sequence of TCONS_00016612-protein

>TCONS_00016612-protein ID=TCONS_00016612-protein|Name=TCONS_00016612-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MSSCNGSRYGFQTVVNCDVGDLSGSYRSFVEATSFITFAIGVALNTGILT
VSISMYPNIDTFDALLMNLTFGELLSSFGLSFMLFVELTTSIAPIGDHGC
QFLTWLDLASVTVTVTTIVALFFEFYKVVYNSARPKKMRPYKLWALILLL
WIIASXNSARPKKMRPYKLWALILLLWIIASIPGMPYMATAKMGTDGFCH
MGRWSDDAEVLFICAMIFFQVLIPLALIVYFFVRSLLALRVDTMGGTILS
EEANPGSEATLQRGILKRKFRMIGYMALIFYMILITVSIIELSLALNLND
IDSNFVKRARVRELASLLLCLKTVFIPLLFVFNDKLINRFKKICCLWRRD
PDIYNSLRYDVYQQTVSEGQGDGFNDRSNEEEMALANEEFGETERDDVAI
LDSS
Run BLAST on NCBI

transcript from alignment at sc0000243:304380..306691-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016612 ID=TCONS_00016612|Name=TCONS_00016612|organism=Clytia hemisphaerica|type=transcript|length=2312bp|location=Sequence derived from alignment at sc0000243:304380..306691- (Clytia hemisphaerica)
AAAAAAAGAAAAATACGTCAAAACCAATAAATCTACATATTCAACAAATA
ATCCAATACATTTTATGGGAAAATAGTGCCGAACACGGAATCAAGCAGAA
TGTCCTCGTGTAATGGATCACGATATGGATTCCAAACCGTCGTTAACTGC
GACGTTGGTGATCTATCGGGAAGTTATCGATCCTTCGTAGAAGCGACATC
CTTCATAACGTTTGCTATCGGGGTCGCCTTGAATACCGGAATCCTAACCG
TTTCAATATCCATGTACCCCAACATCGATACATTCGATGCGCTATTGATG
AATCTTACTTTTGGTGAACTTCTTAGCTCATTTGGATTATCTTTTATGTT
ATTTGTGGAGCTGACAACTAGTATTGCACCAATAGGAGATCACGGTTGCC
AATTCTTAACATGGTTAGATTTAGCTTCAGTTACTGTAACTGTTACAACA
ATCGTAGCATTATTTTTCGAATTTTACAAAGTTGTTTATAATAGTGCTCG
TCCAAAGAAAATGAGACCTTATAAATTATGGGCATTGATTTTATTGTTAT
GGATTATTGCGTCGANTAATAGTGCTCGTCCAAAGAAAATGAGACCTTAT
AAATTATGGGCATTGATTTTATTGTTATGGATAATTGCGTCGATTCCAGG
AATGCCGTACATGGCCACTGCAAAAATGGGCACTGATGGGTTTTGTCATA
TGGGACGCTGGTCAGATGATGCCGAAGTCCTATTCATCTGTGCTATGATT
TTCTTTCAAGTTTTGATCCCGTTAGCTTTAATTGTTTACTTTTTCGTACG
TTCGCTACTTGCTCTACGCGTGGATACCATGGGTGGGACAATTTTGAGTG
AAGAAGCAAACCCAGGGTCAGAAGCAACCTTACAACGTGGTATTTTAAAA
CGTAAATTTCGTATGATTGGTTACATGGCATTGATTTTCTACATGATTTT
GATTACAGTTAGTATTATTGAACTTTCCTTGGCTTTGAACTTGAATGACA
TTGACTNATTTTCTACATGATTTTGATAACAGTTAGTATTATTGAACTTT
CCTTGGCTTTGAACTTGAATGACATTGACTCGAATTTCGTAAAACGTGCT
CGAGTACGTGAATTAGCATCTTTGTTACTCTGCTTGAAAACGGTATTCAT
TCCATTGTTATTTGTTTTCAATGATAAGTTGATCAATCGTTTCAAGAAGA
TTTGTTGTTTGTGGCGTCGTGACCCTGATATTTACAACAGTTTAAGGTAT
GATGTGTACCAACAGACTGTATCCGAGGGACAAGGGGACGGGTTCAATGA
TCGTTCAAATGAAGAAGAGATGGCACTGGCTAATGAAGAGTTTGGTGAAA
CTGAAAGAGACGATGTTGCCATTTTAGATTCCAGCTAAGGAGTATCATTA
AATCAATGAATGAAAGGTTAAAGTGGGAAGAATCAAAATGAGACTTCATT
GTTCCAGCTAAGAAGTATCATTTTAAATCAATGAATAAAAAATTAAATGT
GAAGAGAATCAAAAGGAGTTGCGCCATTAAAAATGGGACTTCATTGTTCA
GGAAGGAGCCAAGAATCCAAAGATAACGATTTTGCTTACTCGAAGTGAAA
CTTTGTGGAACTTATTAGCTATAATAACATGTTATAAACTTCATAGTTGC
TATTGAAAGAACATTATTTCTGCAAGGGACAAAGATGATGATATTTTATG
TCCTGCAAAATATTATGTTTCTAACCTAGAAGAACTAATATGGACCAAGA
ATATTTATGACAATAAATGTATTGATTACAATAATAGTACATTGGACCCT
AAATCACCAGAGAACTGCCAGAGTTAATTATCTTATGAATGAACTTAGAC
TTATAATTATCTCACCCATAAAAGAAGAATATGATTTTTAATTTTTGACA
ATCAAAGCCCAATATACTGTATGAATGAAAGTGTTTCCGAATAAAAAATC
ATAGCAATTGTCAGCTTTCTAATGTAAATTCTTTTGGTCCAAATCTTGCA
ACCATTTCTTCCATCTATTGTCTACAATTTAAACCTTTTTAAGTACTTTA
GGTCTTACGTTCTTATATATTTATTCCTTTTTATAACATTCTTTTTCTAT
ATCAACCAAAAAAAAAAACTTTAAAAAAATATTTAAATTTTAGGAAAATT
TTAATTTATCAAAAAATTGAATTTAAAATCCGGACATTTTTTGGAAAAAA
TAAAGCTTCTTTCAAAATGTATATCTTCCTCCCTCCGTTTACAATTTGTT
TTCTTTTACTCATGATATGCACCATAGCAATGTCTCCGCGGACCAAAGCT
GATTGGTTGAAA

Coding sequence (CDS) from alignment at sc0000243:304380..306691-

>TCONS_00016612 ID=TCONS_00016612|Name=TCONS_00016612|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at sc0000243:304380..306691- (Clytia hemisphaerica)
ATTGACTCGAATTTCGTAAAACGTGCTCGAGTACGTGAATTAGCATCTTT
GTTACTCTGCTTGAAAACGGTATTCATTCCATTGTTATTTGTTTTCAATG
ATAAGTTGATCAATCGTTTCAAGAAGATTTGTTGTTTGTGGCGTCGTGAC
CCTGATATTTACAACAGTTTAAGGTATGATGTGTACCAACAGACTGTATC
CGAGGGACAAGGGGACGGGTTCAATGATCGTTCAAATGAAGAAGAGATGG
CACTGGCTAATGAAGAGTTTGGTGAAACTGAAAGAGACGATGTTGCCATT
TTAGATTCCAGCTAAATGTCCTCGTGTAATGGATCACGATATGGATTCCA
AACCGTCGTTAACTGCGACGTTGGTGATCTATCGGGAAGTTATCGATCCT
TCGTAGAAGCGACATCCTTCATAACGTTTGCTATCGGGGTCGCCTTGAAT
ACCGGAATCCTAACCGTTTCAATATCCATGTACCCCAACATCGATACATT
CGATGCGCTATTGATGAATCTTACTTTTGGTGAACTTCTTAGCTCATTTG
GATTATCTTTTATGTTATTTGTGGAGCTGACAACTAGTATTGCACCAATA
GGAGATCACGGTTGCCAATTCTTAACATGGTTAGATTTAGCTTCAGTTAC
TGTAACTGTTACAACAATCGTAGCATTATTTTTCGAATTTTACAAAGTTG
TTTATAATAGTGCTCGTCCAAAGAAAATGAGACCTTATAAATTATGGGCA
TTGATTTTATTGTTATGGATTATTGCGTCGANTAATAGTGCTCGTCCAAA
GAAAATGAGACCTTATAAATTATGGGCATTGATTTTATTGTTATGGATAA
TTGCGTCGATTCCAGGAATGCCGTACATGGCCACTGCAAAAATGGGCACT
GATGGGTTTTGTCATATGGGACGCTGGTCAGATGATGCCGAAGTCCTATT
CATCTGTGCTATGATTTTCTTTCAAGTTTTGATCCCGTTAGCTTTAATTG
TTTACTTTTTCGTACGTTCGCTACTTGCTCTACGCGTGGATACCATGGGT
GGGACAATTTTGAGTGAAGAAGCAAACCCAGGGTCAGAAGCAACCTTACA
ACGTGGTATTTTAAAACGTAAATTTCGTATGATTGGTTACATGGCATTGA
TTTTCTACATGATTTTGATTACAGTTAGTATTATTGAACTTTCCTTGGCT
TTGAACTTGAATGACATTGACTCGAATTTCGTAAAACGTGCTCGAGTACG
TGAATTAGCATCTTTGTTACTCTGCTTGAAAACGGTATTCATTCCATTGT
TATTTGTTTTCAATGATAAGTTGATCAATCGTTTCAAGAAGATTTGTTGT
TTGTGGCGTCGTGACCCTGATATTTACAACAGTTTAAGGTATGATGTGTA
CCAACAGACTGTATCCGAGGGACAAGGGGACGGGTTCAATGATCGTTCAA
ATGAAGAAGAGATGGCACTGGCTAATGAAGAGTTTGGTGAAACTGAAAGA
GACGATGTTGCCATTTTAGATTCCAGCTAAATGTCCTCGTGTAATGGATC
ACGATATGGATTCCAAACCGTCGTTAACTGCGACGTTGGTGATCTATCGG
GAAGTTATCGATCCTTCGTAGAAGCGACATCCTTCATAACGTTTGCTATC
GGGGTCGCCTTGAATACCGGAATCCTAACCGTTTCAATATCCATGTACCC
CAACATCGATACATTCGATGCGCTATTGATGAATCTTACTTTTGGTGAAC
TTCTTAGCTCATTTGGATTATCTTTTATGTTATTTGTGGAGCTGACAACT
AGTATTGCACCAATAGGAGATCACGGTTGCCAATTCTTAACATGGTTAGA
TTTAGCTTCAGTTACTGTAACTGTTACAACAATCGTAGCATTATTTTTCG
AATTTTACAAAGTTGTTTATAATAGTGCTCGTCCAAAGAAAATGAGACCT
TATAAATTATGGGCATTGATTTTATTGTTATGGATTATTGCGTCGANTAA
TAGTGCTCGTCCAAAGAAAATGAGACCTTATAAATTATGGGCATTGATTT
TATTGTTATGGATAATTGCGTCGATTCCAGGAATGCCGTACATGGCCACT
GCAAAAATGGGCACTGATGGGTTTTGTCATATGGGACGCTGGTCAGATGA
TGCCGAAGTCCTATTCATCTGTGCTATGATTTTCTTTCAAGTTTTGATCC
CGTTAGCTTTAATTGTTTACTTTTTCGTACGTTCGCTACTTGCTCTACGC
GTGGATACCATGGGTGGGACAATTTTGAGTGAAGAAGCAAACCCAGGGTC
AGAAGCAACCTTACAACGTGGTATTTTAAAACGTAAATTTCGTATGATTG
GTTACATGGCATTGATTTTCTACATGATTTTGATTACAGTTAGTATTATT
GAACTTTCCTTGGCTTTGAACTTGAATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009283XLOC_009283Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016612-proteinTCONS_00016612-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016612-exon-sc0000243-1575043694:305693..306691TCONS_00016612-exon-sc0000243-1575043694:305693..306691Clytia hemisphaericaexon
TCONS_00016612-exon-sc0000243-1575043694:304380..305618TCONS_00016612-exon-sc0000243-1575043694:304380..305618Clytia hemisphaericaexon
TCONS_00016612-exon-sc0000243-1510915933:305693..306691TCONS_00016612-exon-sc0000243-1510915933:305693..306691Clytia hemisphaericaexon
TCONS_00016612-exon-sc0000243-1510915933:304380..305618TCONS_00016612-exon-sc0000243-1510915933:304380..305618Clytia hemisphaericaexon
TCONS_00016612-exon-sc0000243-1491911889:305693..306691TCONS_00016612-exon-sc0000243-1491911889:305693..306691Clytia hemisphaericaexon
TCONS_00016612-exon-sc0000243-1491911889:304380..305618TCONS_00016612-exon-sc0000243-1491911889:304380..305618Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:304380..306691 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0511529	0	0.019369	10.2362	6.63209	6.49065	7.72845	6.93159	13.6508	5.65442	7.93994	19.5622	12.8518	16.5092	20.1716	11.4785	22.2195	9.32855	11.8082	5.46042	5.74731	2.33219	3.6544	5.07439	6.69186	45.0695	34.2736	62.3476	37.8709
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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