TCONS_00016601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016601
Unique NameTCONS_00016601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016601 ID=TCONS_00016601|Name=TCONS_00016601|organism=Clytia hemisphaerica|type=transcript|length=289bp
ACCATTAGGGACAATAGCTATGTTATATTCAAATGATTTCTCAATACTTG
AAGATGTTTCATTCCATAAACAAACAAGCATCAAAAATGCCAAACATCTG
GGTATGTTCTTTGTCATTTTGCTCTGATGTGATGGTGTGCGGCGCGGCGC
GGTGTTGGAACTTTCTCCTCACTTGTCTCTTGTTCGTGTCACTGCCTTGC
CTTTTTAAAAGCTAGGTTTATACATATGACAGAGGTTTTTGTTAACTTTT
ATACCCATTAACATTTGAAACTTTTATGTTAAGCTAAAA
Run BLAST on NCBI

transcript from alignment at sc0000243:193620..193987-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016601 ID=TCONS_00016601|Name=TCONS_00016601|organism=Clytia hemisphaerica|type=transcript|length=368bp|location=Sequence derived from alignment at sc0000243:193620..193987- (Clytia hemisphaerica)
ACCATTAGGGACAATAGCTATGTTATATTCAAATGATTTCTCAATACTTG
AAGATGTTTCATTCCATAAACAAACAAGCATCAAAAATGCCAAACATTTG
GGTATGTTCTTTGTCATTTTGCTCTGATGTGATGGTGTGCGGCGCGGCNC
AAACAAGCATCAAAAATGCCAAACATCTGGGTATGTTCTTTGTCATTTTG
CTCTGATGTGATGGTGTGCGGCGCGGCGCGGTGTTGGAACTTTCTCCTCA
CTTGTCTCTTGTTCGTGTCACTGCCTTGCCTTTTTAAAAGCTAGGTTTAT
ACATATGACAGAGGTTTTTGTTAACTTTTATACCCATTAACATTTGAAAC
TTTTATGTTAAGCTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009280XLOC_009280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016601-exon-sc0000243-1575043694:193893..193987TCONS_00016601-exon-sc0000243-1575043694:193893..193987Clytia hemisphaericaexon
TCONS_00016601-exon-sc0000243-1575043694:193620..193813TCONS_00016601-exon-sc0000243-1575043694:193620..193813Clytia hemisphaericaexon
TCONS_00016601-exon-sc0000243-1510915933:193893..193987TCONS_00016601-exon-sc0000243-1510915933:193893..193987Clytia hemisphaericaexon
TCONS_00016601-exon-sc0000243-1510915933:193620..193813TCONS_00016601-exon-sc0000243-1510915933:193620..193813Clytia hemisphaericaexon
TCONS_00016601-exon-sc0000243-1491911889:193893..193987TCONS_00016601-exon-sc0000243-1491911889:193893..193987Clytia hemisphaericaexon
TCONS_00016601-exon-sc0000243-1491911889:193620..193813TCONS_00016601-exon-sc0000243-1491911889:193620..193813Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:193620..193987 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.266906	0	0	0	4.26389	0	1.22716	1.47244	2.67277	2.45271	1.34199	4.72431	6.1164	0.710314	2.94586	4.97557	2.16898	2.88846	9.56521	2.76715	2.04201	0	0.817751	1.8742	1.73284	5.86399	1.54689	0	0	2.50617
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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