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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016599 ID=TCONS_00016599|Name=TCONS_00016599|organism=Clytia hemisphaerica|type=transcript|length=2663bp
TTTGAAGGTATTTTTGTTGTCTTACAAGCTCTGATGTTTACTTGTGGGGA
TTTTCTTGTTTGCATTAATCTTTAAAATTACGTTTGAGCTTTTGATTCTA
CGGAGACCGTTACATTATTTGGAATATTGAACTACCAATAACTTTTGGGC
ATCCAACGCCGTAGCAAGAAGAAACGTGGACCCATGAGTACCAAGAGTAT
ACGTCGTATTAACGAATACTATAATTGGCAATTCGAAGATGACGGACGTG
AAGCTATACGGGAATGGTCACGTAAACGTATACAAAAAATGCGTGGTTTC
AATAAATCGTATTACGGATGTCTAGTTTATACTTTTCATTTGGATACGTT
AAAAagctttgttgaaaatttcaattttatggtCATCCTCCAGATGTTCA
TCGCTGCAGGGGGTGTTTATCTATTTGACCATTTTGACATTCATTACAAT
TTCAATGCTGCTCTATTTGTCTCACCAATTGTTTTCCCTCTCGCTTTCTC
TATCAATACCGATTTCCAACGCCGTGAGAAAGTATTGGACGACTTGGCTA
ACTTCAAATCGTCTTCAATGCTATGGTTCTTTTGTATGAGAGAATGGAAG
AAAGGTGCAGGGCTAGATGATGAATGGATGAACCAAATACAAAAGAAGTT
ACATTCGATTATGTTCAACTTGAGAGAATACCTGCTAACAAGTCGTAGTG
ATCGCCGCAACATCATTGCGCGTTATATGTACGAAGATTACAGCGACTGT
AGCCAACTGATTGACAACGTTCGAGAATCCAAACTACCTGCAAACCCAGC
TCTCATTTCTCGCGCGTATCATCTTCTACAAGCTATCTGTTTATCCTTTG
AACGACTCCGCGTTATCCGAGAATACCGCTCACCGCGCTCCATTCGTTCT
TTCAACAAAGTGCTGGTACTTCTGTTACCCATCATCCTTTGCCCGTACTT
CGTAGCTTTGACACGTGCTCAGAGTGGCTCACCTTGGGGCGCATATTTGA
TAGCTGTTTTGGTAGCAGCGATATATGGGGCGTTACAGGGCGTGCAAGAT
AAATTGGATGACCCGTTTGATGGAATGAGTGAAGATGACATTAACCTTGA
CACCATTGATGAATGGACATTCAATTCTCTAGAGAATGCTGCCAAAAGAG
ATTATGAtggtttcaaaagttttatacATAATCAATCAGGCACAGTGGAT
GAAAAAGATGctgaaacaacaaaaaatacCAAACTGAATGGTAGCGTTTC
TTCAAGCAACGATCCAAAAACACCGCCGCAGATTTATCGACCGAAGACCA
GAAGCATTGCTGAAATTCTGAGAGAGATGCAGGAGAAAGATGCAGCAGGA
AGCCGAAATCATAGTTTTAAGAATAAGAAAAACCCCATCAAAAAGATAAG
TATGAGGCTGATTGAAAAAAtgcatgaaaaagaaaaaaatgatagcGATA
ACATCACGAGTAGTTCGAAGGCTGGTAATTTGAATTCAAACCCAACTGAA
AAGAGCCATTTATCCCTTGGTAGCCCTTCTAACAGGAGTGTTTCTTCTAA
AAAGAGCCTCTCAAAAGTCTCCTTCTCAGATGATATGgttaatttcaaaa
aagaaaatagcgGCGTTCCTAATGGTGACGATGATGAGTATGATGATGCT
TTTCATAATGGTACCCAAGCTGCCGTACAACCATTATTGGGATTAATACG
AGAAGATGATTCAAAACCGAAGCTAGCCAAAGATAAAGAAGTTGATATTG
CGGAGATAAAAGCACCTGAGAAAGACAGTGTATTGAAACTAACCAATGGT
GTGGCTTATGGGATCAAAGACTCTGAGCATAATATTAAGGGGATAAACGA
CGATGATTGTGAGCGAGACTCAGACGATTCTTTTCAAGAGGTCGTTGTCA
TCGATTAATTTATTTAAATAAACTTAatgtttttcacttttaattttttt
gctcaaattttgtgagGCAGCTCCACGTGACTTAAAAAacttgaattata
ttttttttataagaacatccaaaatatttgaagtctTCGGATTTTATTCG
GATGagtttttttgtgcaatttccaagaaattgggtgttttagagtccgc
aaagccttaaaatgttctttgttTTAAggattttggccattgaagcctta
tgtctttatgaaaaaacgtgtacatgtttttatttgatattttgacTGGA
GAAATTATTTTCATGATGTGGGTTCGAAACTAGTgaacatttcttttttt
cagtgggaaattatactctgatttttgtccccgttgaaaataatcagata
agcaaacccccactgcaaaataatctgctattttttccaacccccatTGA
GTTTTGGTTCGTTATTTCTACTTTCCCACTGGATagtaaaatcccaccgg
gtctgcgagaagggaGTGCATTAAAGACTATAAAGTTATGATTTTCACCT
TAATTTGTAAAACGAAATTATTTATTCTAATTTTTAATTTGACATCATGt
cgaattttaatttctgccattTCTTGGTCAAATATACGGTCATTTTTAGA
CTatgtaaaatgttaaaaataattgatttcttgaccaaataatttttcag
tataTAGACTTATAGATTTggaaaaagaggataagaaatgctACCGTAAA
CACTATAGCTTAG Run BLAST on NCBI transcript from alignment at sc0000243:168878..176281- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016599 ID=TCONS_00016599|Name=TCONS_00016599|organism=Clytia hemisphaerica|type=transcript|length=7404bp|location=Sequence derived from alignment at sc0000243:168878..176281- (Clytia hemisphaerica)
TTTGAAGGTATTTTTGTTGTCTTACAAGCTCTGATGTTTACTTGTGGGGA
TTTTCTTGTTTGCATTAATCTTTAAAATTACGTTTGAGCTTTTGATTCTA
CGGAGACCGTTACATTATTTGGAATATTGAACTACCAATAACTTTTGGGG
TATGTTTTCTTTCTTAAATTTCCTTATTTACTCTCTCTAATTTGATATGC
CAAAATTCGAAAATCGTCCTCAAAATTTTCGAGAATTTTGTCAATTTTTG
ACGTTTTTGTCACCCTTAGAGAGACTATTTTTAAAAAAGAAAGTTTTTTA
GTCCGAATTTCAAGAATTCATGACCCTTTAAGGGAGTCGATTTATGATAA
AAATTCGTACCCCTTTGAGGAACATTCGAGGGTTTGAAAAAGGAACCCTT
ATGGCTCGCACGTACCCGGCACACATTTTGCCTAAGTATCCGCCCTCCCA
GAGTTTACGAGGTTACAGGCTCGTCCGAGCGAAAGTTCGAAAATCAGACC
CTTTGAGAAAATGTTGCCCCTTTTTTAACGTTTTATGACCTTTGAGATAC
TATTTTCCCAATATTCAGCCAACATTTTCCAAATTTGGTCCTACGACAAT
TTACCACCCTGTGAGGACGTCAACTTTTGATATTTCGTAATTTTAGGGTA
TTAGGACCCTTTTAGAGACTCAATTCGTCTTTTATGATTTTTGTCCCCCT
TTCAGAGACTTCCGTGGGTGTAAAAAGGGACTATTATGGCTCGCATATAC
CAGACATCCATTTTGTCTACGTATGGTACCCCTACCTAGGTTTACTTTCT
CTAATTTGGAGGTTTACATCAGTGAATACTATAATCATTGAAATTATAGA
GAAAAAATCCTTTTTGGAATTGTATTCTAAAATCGAATATTGAGGTCTGA
ACTCATGAACTCGTCAAAATAAGTTTGATGAACCCATGATCAGATTTTTT
ATCGCATTTGGTTTATCTACTTATTGCTTTTTGGGGTTTATTTTTCACTT
ATTAAAATAAAAGAAAGCTTTAAATGAAAGCTTTAAAAGTTATTCAAAAT
TATGTAGACCAAACTAGGATAAATTATAGATTTATGAAACTCTAAATAAA
GCCCAAATAAAATCAAAGTCTACTGTTTATATTGTTGAAAATATACGAAT
TTTAAAATCTATTTTTATAAACTTTGGGGCTTAAAAATACCCCCCAAAAA
ATTGAAGTTCATCTGAAATAAAACATATATTTGTTTTTCCTTGTTCAACT
AAATATTTGTTTGTCATTCTTTTCAAAACTATTGATGACGTGTACTTTGT
TGGTGTTTTCAGCAAATTTTCGTTTTACGGTAAGAAGACATATTAAGTTG
AAACCTTTTAAGGCTTTTTGGGTGCATTTTTTCAAATCTCGAGAGGTGTA
TTTGACCTTTCTAGAAATAGTCTGTTGACCACATATTAATGATATCAGAC
ATCCAGGGGGTCAATACTATCTGGATATCGAAGAGGACCTTACAAGAGAG
GATATCAAGAGGTATTTTAAGCCAGAGATGTTAAACTTCAAAAAATAGAT
ACACCCTCAACTGGTGAAAGTTTCTAGAAGGCCAATTTCACATTCTAAAT
AATGTTACGTAAACAAGCCATAGTTGAGTATTTGCAGATATATATGACTT
TCTAAGAATTTTTCGGGATAGTTGCTCTACAACTGTAGTCCGAAGTGACC
CAAAGGCTCCTCTTTCGATTGCTGGCTACACGAAGACGAAGGTAAAGGAG
GGCGCTACCTTTGATCCTTTAATCAATAAATAAGTACAAAGCAGAGAGGC
ATCAAATACCATTTTGTACTAAGTATTTGGCATGCCCCGACCGGGGATTG
AACACCAGGCCTTGCACACCGTAGTCTGATTTTCTACCCTTCCACTACGG
GCGTTACCCGGGAGTTACTTACTACTATTTATGCATTTTTTCTAAAATTT
CAAAGCTATCACAAGATNCTTTGTTGGTGTTTTCAGCAAATTTTCGTTTT
ACGGTAAGAAGACATATTAAGTTGAAACCTTTTAAGGCTTTTTGGGTGCA
TTTTTTCAAATCTCGAGAGGTGTATTTGACCTTTCTAGAAATAGTCTGTT
GACCACATATTAATGATATCAGACATCCAGGGGGTCAATACTATCTGGAT
ATCGAAGAGGACCTTACAAGAGAGGATATCAAGAGGTATTTTAAGCCAGA
GATGTTAAACTTCAAAAAATAGATACACCCTCAACTGGTGAAAGTTTCTA
GAAGGCCAATTTCACATTCTAAATAATGTTACGTAAACAAGCCATAGTTG
AGTATTTGCAGATATATATGACTTTCTAAGAATTTTTCGGGATAGTTGCT
CTACAACTGTAGTCCGAAGTGACCCAAAGGCTCCTCTTTCGATTGCTGGC
TACACGAAGACGAAGGTAAAGGAGGGCGCTACCTTTGATCCTTTAATCAA
TAAATAAGTACAAAGCAGAGAGGCATCAAATACCATTTTGTACTAAGTAT
TTGGCATGCCCCGACCGGGGATTGAACACCAGGCCTTGCACACCGTAGTC
TGATTTTCTACCCTTCCACTACGGGCGTTACCCGGGAGTTACTTACTACT
ATTTATGCATTTTTTCTAAAATTTCAAAGCTATCACAAGATTCTCCTTTC
GAGCTCAAATTAGAAAAAAAGCATCTTATGCAATTAGAGGGGTAATCCTC
GTTAAAAGGATAGTTTACAGTACCTCATGTCTGACTAATTTAAATATTTT
CACTCTCTTAGAACATAACATTAATTAGTCAACTTTACATAATAAAACTA
AATTTGCTTACAAAACAACATAGCAGGATTTCTAACTGCCCAAGTTCGAA
TTTTTTATCCGTTTTCTGGAAGTTTATTTTTAAAGCTATCTCAAAATATA
TATCATCAATCCATCATTTTTTGCTTTATCTTAAAAANGGGTGTAAAAAG
GGACTATTATGGCTCGCATATACCAGACATCCATTTTGTCTACGTATGGT
ACCCCTACCTAGGTTTACTTTCTCTAATTTGGAGGTTTACATCAGTGAAT
ACTATAATCATTGAAATTATAGAGAAAAAATCCTTTTTGGAATTGTATTC
TAAAATCGAATATTGAGGTNAGGATAGAAAATATAAGCATTATAATCTTC
ATTCTATAAAGAGGGACGGATCAGTATAAATTTTAACCAAAAATAAAATT
GAAAAAGAAGAATCTCAGAACGCAGAAAAGGAAGAAAATCATGAATCGTG
AAAACTACAAATGTAAAATTCATCACATAATCAAACTACATTTGGGGTCT
CAAGGGACCATTTAAAAAAAGGAAAAGCTACAAATACGAAATTCATCAAA
TTTAATCAAACTACATTTGGGGTCTCAAGAGACTATTTAAAAAAATGTCT
TTCACGAAATCCTATACATTTCCTCTTAACAGCATCCAACGCCGTAGCAA
GAAGAAACGTGGACCCATGAGTACCAAGAGTATACGTCGTATTAACGAAT
ACTATAATTGGCAATTCGAAGATGACGGACGTGAAGCTATACGGGAATGG
TCACGTAAACGTATACAAAAAATGCGTGGTTTCAATAAATCGTATTACGG
ATGTCTAGTTTATACTTTTCATTTGGATACGTTAAAAAGCTTTGTTGAAA
ATTTCAATTTTATGGTCATCCTCCAGATGTTCATCGCTGCAGGTTTGTTG
ATTTAACATTATCGTCGTTTTGAACATTTCCATTTCCGCACAAAAGACCA
GATGTTTGGGTAGTTAAAAAATAAGCTTTAGAAACCCAGCTGCCATACAA
CGTTGTCTCAACGTTTATTTAACGTTCACAACGTCCATATAACGTTAGAT
GAACGTTAAAACAACGTTATGTGCCAGCTGGGAAGCTAGGTAGTTTCGTG
AGTAAACACAAGATTTTCTCTACATTTAGAAACAAACCCTTTCCAATTCC
ATACCGGTTATTTCGGGAAAAGTAGCGGAAAGATTCTAGGAAAGAGACAA
GAAGCTTAGTGCGGAAATGGGAAACTTATACAAAACGACGGTATATTTGG
AATACATTTATCTGGGCGGGGTCACGGCCAGTAGCGAGTTTGTGTATTGG
AGAATATTGAGGGAAATGTTAAGTGAAGTTGATGCAGAACAAAGTCGATA
GTTGATGTACGGCTCTATATCGCCTTTGCTCGCCTAAACAGACGACGGTC
TTTTGTTGTTTTTACCGTTGTCGAGCAAAGTGGAAGGCGATTTTGGTGAC
ATGTTAATTTTGCTATATACCGTCTCCTTCGATTTATCTCGAATTCATAA
ACTCACTAATATCTCTAGGAGTGCTTTTTTATTACTGTTGAGGAACCTTT
CCGTACCTCGAAGCTCTTCAGTTTTTGAATACTTCTTGCCTAGTAATATT
CGTGTAATAAGGTGACCTCTGCAAATTTCAGAAAAATAGAACTAATATTG
CAGTTTCTTAGAGAACAATGATCTCTATCTCTATTCTCTATCTCCACCAA
GGGGCCAAGCATTTTTTATTCCAAATAAATGTCTTTTGGTTCTTCAATCT
TAGGGGACCATCTTCAAGATGTTACTATAGAGAGGTTTCTACCATAGTCA
TTATAAAAAACTCCGCTCTGGGAATTTATTGTTTTAGCTTTTAGTTAAAT
TTTCTTTTGTTACAAACAAAAGACAAGTTGCGATTTGCATGCTTTTTGAT
CACGTTACCAAGATGTCTTTTTTCGGATTGGTCTATTTTCTAATCNACAT
GCTTTTTGATCACGTTACAAAATGTCTTTTTTCGGATTGGTCTATTTTCT
AATCAGCTGATCAAGAAGTTTGCAAAAAAAATCGATTTTGGTACGTAAGC
TTCATCTTTTAACAATAAAAAGAGACAAAAGCCTTCCAGACCAGCGTTTT
TTTAATGACTATGGTTCTACTATAGAACTTTGATGAGTTGGCTAGACATT
TTCAGTATATCCCAGCTAGAACAGAACACCCTAATAGCGTCCATCTAACG
TCCCTACCGTTCATATAACGTTAAATGAACGTTAAAACAACGTTATGGGC
CGCAGTTGGGATGGTCAGGGCTCCAGATTCTGGGATACAGAAAACCTGTT
ACTTCTATCAATATTAATTAGACTATTGTCATTTCATCTTTTATTTTCAG
GGGGTGTTTATCTATTTGACCATTTTGACATTCATTACAATTTCAATGCT
GCTCTATTTGTCTCACCAATTGTTTTCCCTCTCGCTTTCTCTATCAATAC
CGATTTCCAACGCCGTGAGAAAGTATTGGACGACTTGGCTAACTTCAAAT
CGTCTTCAATGCTATGGTTCTTTTGTATGAGAGAATGGAAGAAAGGTGCA
GGGCTAGATGATGAATGGATGAACCAAATACAAAAGAAGTTACATTCGAT
TATGTTCAACTTGAGAGAATACCTGCTAACAAGTCGTAGTGATCGCCGCA
ACATCATTGCGCGTTATATGTACGAAGATTACAGCGACTGTAGCCAACTG
ATTGACAACGTTCGAGAATCCAAACTACCTGCAAACCCAGCTCTCATTTC
TCGCGCGTATCATCTTCTACAAGCTATCTGTTTATCCTTTGAACGACTCC
GCGTTATCCGAGAATACCGCTCACCGCGCTCCATTCGTTCTTTCAACAAA
GTGCTGGTACTTCTGTTACCCATCATCCTTTGCCCGTACTTCGTAGCTTT
GACACGTGCTCAGAGTGGCTCACCTTGGGGCGCATATTTGATAGCTGTTT
TGGTAGCAGCGATATATGGGGCGTTACAGGGCGTGCAAGATAAATTGGAT
GACCCGTTTGATGGAATGAGTGAAGATGACATTAACCTTGACACCATTGA
TGAATGGACATTCAATTCTCTAGAGAATGCTGCCAAAAGAGATTATGATG
GTTTCAAAAGTTTTATACATAATCAATCAGGCACAGTGGATGAAAAAGAT
GCTGAAACAACAAAAAATACCAAACTGAATGGTAGCGTTTCTTCAAGCAA
CGATCCAAAAACACCGCCGCAGATTTATCGACCGAAGACCAGAAGCATTG
CTGAAATTCTGAGAGAGATGCAGGAGAAAGATGCAGCAGGAAGCCGAAAT
CATAGTTTTAAGAATAAGAAAAACCCCATCAAAAAGATAAGTATGAGGCT
GATTGAAAAAATGCATGAAAAAGAAAAAAATGATAGCGATAACATCACGA
GTAGTTCGAAGGCTGGTAATTTGAATTCAAACCCAACTGAAAAGAGCCAT
TTATCCCTTGGTAGCCCTTCTAACAGGAGTGTTTCTTCTAAAAAGAGCCT
CTCAAAAGTCTCCTTCTCAGATGATATGGTTAATTTCAAAAAAGAAAATA
GCGGCGTTCCTAATGGTGACGATGATGAGTATGATGATGCTTTTCATAAT
GGTACCCAAGCTGCCGTACAACCATTATTGGGATTAATACGAGAAGATGA
TTCAAAACCGAAGCTAGCCAAAGATAAAGAAGTTGATATTGCGGAGATAA
AAGCACCTGAGAAAGACAGTGTATTGAAACTAACCAATGGTGTGGCTTAT
GGGATCAAAGACTCTGAGCATAATATTAAGGGGATAAACGACGATGATTG
TGAGCGAGACTCAGACGATTCTTTTCAAGAGGTCGTTGTCATCGATTAAT
TTATTTAAATAAACTTAATGTTTTTCACTTTTAATTTTTTTGCTCAAATT
TTGTGAGGCAGCTCCACGTGACTTAAAAAACTTGAATTATATTTTTTTTA
TAAGAACATCCAAAATATTTGAAGTCTTCGGATTTTATTCGGATGAGTTT
TTTTGTGCAATTTCCAAGAAATTGGGTGTTTTAGAGTCCGCAAAGCCTTA
AAATGTTCTTTGTTTTAAGGATTTTGGCCATTGAAGCCTTATGTCTTTAT
GAAAAAACGTGTACATGTTTTTATTTGATATTTTGACTGGAGAAATTATT
TTCATGATGTGGGTTCGAAACTAGTGAACATTTCTTTTTTTCAGTGGGAA
ATTATACTCTGATTTTTGTCCCCGTTGAAAATAATCAGATAAGCAAACCC
CCACTGCAAAATAATCTGCTATTTTTTCCAACCCCCATTGAGTTTTGGTT
CGTTATTTCTACTTTCCCACTGGATAGTAAAATCCCACCGGGTCTGCGAG
AAGGGAGTGCATTAAAGACTATAAAGTTATGATTTTCACCTTAATTTGTA
AAACGAAATTATTTATTCTAATTTTTAATTTGACATCATGTCGAATTTTA
ATTTCTGCCATTTCTTGGTCAAATATACGGTCATTTTTAGACTATGTAAA
ATGTTAAAAATAATTGATTTCTTGACCAAATAATTTTTCAGTATATAGAC
TTATAGATTTGGAAAAAGAGGATAAGAAATGCTACCGTAAACACTATAGC
TTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016599-exon-sc0000243-1575043694:176133..176281 | TCONS_00016599-exon-sc0000243-1575043694:176133..176281 | Clytia hemisphaerica | exon |
| TCONS_00016599-exon-sc0000243-1575043694:172590..172849 | TCONS_00016599-exon-sc0000243-1575043694:172590..172849 | Clytia hemisphaerica | exon |
| TCONS_00016599-exon-sc0000243-1575043694:168878..171131 | TCONS_00016599-exon-sc0000243-1575043694:168878..171131 | Clytia hemisphaerica | exon |
| TCONS_00016599-exon-sc0000243-1510915933:176133..176281 | TCONS_00016599-exon-sc0000243-1510915933:176133..176281 | Clytia hemisphaerica | exon |
| TCONS_00016599-exon-sc0000243-1510915933:172590..172849 | TCONS_00016599-exon-sc0000243-1510915933:172590..172849 | Clytia hemisphaerica | exon |
| TCONS_00016599-exon-sc0000243-1510915933:168878..171131 | TCONS_00016599-exon-sc0000243-1510915933:168878..171131 | Clytia hemisphaerica | exon |
| TCONS_00016599-exon-sc0000243-1491911889:176133..176281 | TCONS_00016599-exon-sc0000243-1491911889:176133..176281 | Clytia hemisphaerica | exon |
| TCONS_00016599-exon-sc0000243-1491911889:172590..172849 | TCONS_00016599-exon-sc0000243-1491911889:172590..172849 | Clytia hemisphaerica | exon |
| TCONS_00016599-exon-sc0000243-1491911889:168878..171131 | TCONS_00016599-exon-sc0000243-1491911889:168878..171131 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000243 | supercontig | sc0000243:168878..176281 - |
Blast
The following BLAST results are available for this feature:
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