TCONS_00016588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016588
Unique NameTCONS_00016588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1206

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016588 ID=TCONS_00016588|Name=TCONS_00016588|organism=Clytia hemisphaerica|type=transcript|length=1206bp
aaataaatgattaaaaaagaagagcATTAGAGAAACTGGACAACttacga
aaatatcaaattttaatcgaAGCATCGATCGATAGAGTCATCAAACACAT
TATATGGTCGTTATTTTCCGCGGTTACGATAGAAAGCATTGAATCTAAAA
GCATTGAATTATCACACCCACCAGGTACTGAACAATCTCAGATACTTCAG
AGACGGGAGAAGATTATCAATTACGCTCTGGTTGGCTCAAAAATTTGTTG
ACAAAATGATAAGAGAAAACGTAcgatacacccctgtttcagtgacccGG
TCAAGGATCCGTCCCGATGAAAAAAATTACCTAATACTGACAAGTTCACT
GCCAAGCCACTTTAAGAATTTTGACCTCATTGAATTTcatcgaaagtttg
actttcaaaGGCTCCAGCCGCCTTGGTTCTGCTTTAAGTGCCTANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTGCC
TACAAATTGCCTACCGATCGACGCAGAATTTGAGGATGATTCCAGAAATG
CAAAAACGaagcaaaaaaaagtattttctttaaagGTTATGGCCCTTTAG
AGTACTGTCGGTATTTCGACACCTATACTACAACTAGAAAATAAATTAAT
GAATTCTAGGAATAATGCTTAATAAAAGTGAATTTTCCCGTACTCCGGCA
AGAATTAAGTGATAAAATCCATAGTGCCTAATGTAACATTAAAACTATAA
AAAAGTTTACCTTGGGATTGGGAGTGCCCTACTGAACCATTGATAATTTT
TGCATTGCCAGGCCAAAGAAGAACAACTGCCTTGATTATCAGGTCTACAA
ACTCAGTCCCATTATCAGATTGTAAAATTTTTGGCAATCCAAAATAAGAA
AGATAGCGGACTTTGATGTTTTTGGCGACAACCTTGGGCTCCTTTGTTTT
AAGAGCAAACAGGACATGGAACTTGGCAAAATGGTCCACAATGTGGCCAA
TAAATTTGAATTCACCATCTGGGTCGCGGGTCATGTCAATTAGATCAATC
TATAAATGAAAAGCAGAAGTCTCATGGAGACAAAATTGGGATCCTATTTA
TATAACTCTATTCTTGCGAAAATATACTTttctaaaaatctgaaaaaaac
tgAACAAATTACAATAGTTTTTTCcagtaaaatattttgaaaagctaaAT
TTGTGA
Run BLAST on NCBI

transcript from alignment at sc0000243:35599..37134-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016588 ID=TCONS_00016588|Name=TCONS_00016588|organism=Clytia hemisphaerica|type=transcript|length=1536bp|location=Sequence derived from alignment at sc0000243:35599..37134- (Clytia hemisphaerica)
AAATAAATGATTAAAAAAGAAGAGCATTAGAGAAACTGGACAACTTACGA
AAATATCAAATTTTAATCGAAGCATCGATCGATAGAGTCATCAAACACAT
TATATGGTCGTTATTTTCCGCGGTTACGATAGAAAGCATTGAATCTAAAA
GCATTGAATTATCACACCCACCAGGTGCGTATTTCTTCTTTACCTAAGAA
GAGTCTAGCACACCCACACCCACACCCCTGTTTCACAGGCCATGTTAGGT
TAATAGAAATTGCGCTTGAAAAAAACCCAGTGTTCATATCCCGTTGTTTA
CGGACATTTTAAATGAACACTGTTTTTGACGTTTAGCGTCCATTGAATAC
CCCTGTCTCAAGTATCATTCGACCGCTACAAATGCCCCGTGAAAAGCTAA
CCTTTTCTACTTTCGCAGTGATACTGGGTGTGATAGCTGAGTCGATAAAA
AGAATAGAGAAATTAATCCGATCATCGTATATTTTTGTTTTCTCCTTATT
TCAGGTACTGAACAATCTCAGATACTTCAGAGACGGGAGAAGATTATCAA
TTACGCTCTGGTTGGCTCAAAAATTTGTTGACAAAATGATAAGAGAAAAC
GTACGATACACCCCTGTTTCAGTGACCCGGTCAAGGATCCGTCCCGATGA
AAAAAATTACCTAATACTGACAAGTTCACTGCCAAGCCACTTTAAGAATT
TTGACCTCATTGAATTTCATCGAAAGTTTGACTTTCAAAGGCTCCAGCCG
CCTTGGTTCTGCTTTAAGTGCCTANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTAAGTGCCTACAAATTGCCTACCGATCG
ACGCAGAATTTGAGGATGATTCCAGAAATGCAAAAACGAAGCAAAAAAAA
GTATTTTCTTTAAAGGTTATGGCCCTTTAGAGTACTGTCGGTATTTCGAC
ACCTATACTACAACTAGAAAATAAATTAATGAATTCTAGGAATAATGCTT
AATAAAAGTGAATTTTCCCGTACTCCGGCAAGAATTAAGTGATAAAATCC
ATAGTGCCTAATGTAACATTAAAACTATAAAAAAGTTTACCTTGGGATTG
GGAGTGCCCTACTGAACCATTGATAATTTTTGCATTGCCAGGCCAAAGAA
GAACAACTGCCTTGATTATCAGGTCTACAAACTCAGTCCCATTATCAGAT
TGTAAAATTTTTGGCAATCCAAAATAAGAAAGATAGCGGACTTTGATGTT
TTTGGCGACAACCTTGGGCTCCTTTGTTTTAAGAGCAAACAGGACATGGA
ACTTGGCAAAATGGTCCACAATGTGGCCAATAAATTTGAATTCACCATCT
GGGTCGCGGGTCATGTCAATTAGATCAATCTATAAATGAAAAGCAGAAGT
CTCATGGAGACAAAATTGGGATCCTATTTATATAACTCTATTCTTGCGAA
AATATACTTTTCTAAAAATCTGAAAAAAACTGAACAAATTACAATAGTTT
TTTCCAGTAAAATATTTTGAAAAGCTAAATTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009274XLOC_009274Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016588-exon-sc0000243-1575043694:36961..37134TCONS_00016588-exon-sc0000243-1575043694:36961..37134Clytia hemisphaericaexon
TCONS_00016588-exon-sc0000243-1575043694:35599..36630TCONS_00016588-exon-sc0000243-1575043694:35599..36630Clytia hemisphaericaexon
TCONS_00016588-exon-sc0000243-1510915933:36961..37134TCONS_00016588-exon-sc0000243-1510915933:36961..37134Clytia hemisphaericaexon
TCONS_00016588-exon-sc0000243-1510915933:35599..36630TCONS_00016588-exon-sc0000243-1510915933:35599..36630Clytia hemisphaericaexon
TCONS_00016588-exon-sc0000243-1491911889:36961..37134TCONS_00016588-exon-sc0000243-1491911889:36961..37134Clytia hemisphaericaexon
TCONS_00016588-exon-sc0000243-1491911889:35599..36630TCONS_00016588-exon-sc0000243-1491911889:35599..36630Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:35599..37134 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.407772	0	0.106859	0	0.259529	0.656368	0.106518	0.327248	0	0	0	0	0	0	0	0	0	0	0	0	0.169631	0.235888	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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