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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016584 ID=TCONS_00016584|Name=TCONS_00016584|organism=Clytia hemisphaerica|type=transcript|length=2567bp
tttcaaccaatcagctttgGTCCGCGGAGACATTGctatggtgcatatca
tgagtaaaagaaaacaaattgtaaacgGAGGGAGGAAGATATACATTTTG
AAAGAagctttattttttccaaaaaatgtccggattttaaattcaatttt
ttgataaattaaaattttcctaaaatttaaatatttttttaaagtttttt
tttttggttgatATAGAAAAAGAATGTTATAAAAAGGAATAAATATATAA
GAACGTAAGACCTAAAGTACTTAAAAAGGTTTAAATTGTAGACAATAGAT
GGAAGAAATGGTTGCAAGATTTGGACCAAAAGAAtttacattagaaagct
gacaATTGCTATGATTTTTTATTCGGAAACACTTTCATTCATACAGTATA
TTGGGCTTTGattgtcaaaaattaaaaatcatattCTTCTTTTATGGGTG
AGATAATTATAAGTCTAAGTTCATTCATAAGATAATTAACTCTGGCAGTT
CTCTGGTGATTTAGGGTCCAATGTACTATTATTGTAATCAATACATTTAT
TGTCATAAATATTCTTGGTCCATATTAGTTCTTCTAGGTTAgaaacataa
tattttgcaggACATAAAATATCATCATCTTTGTCCCTTGCAGAAATAAT
GTTCTTTCAATAGCAACTATGAAGTTTATAACATGTTATTATAGCTAATA
AGTTCCACAAAGTTTCACTTCGAGTAAGCAAAATCGTTATCTTTGGATTC
TTGGCTCCTTCCTGAACAATGAAGTCCCATTTTTAATGGCGCAACTCCTT
TTGATTCTCTTcacatttaattttttattcattgaTTTAAAATGATACTT
CTTAGCTGGAACAATGAAGTCTCATTTTGATTCTTCCCACTTTAACCTTT
CATTCATTGATTTAATGATACTCCTTAGCTGGAATCTAAAATGGCAACAT
CGTCTCTTTCAGTTTCACCAAACTCTTCATTAGCCAGTGCCATCTCTTCT
TCATTTGAACGATCATTGAACCCGTCCCCTTGTCCCTCGGATACAGTCTG
TTGGTACACATCATACCTTAAACTGTTGTAAATATCAGGGTCACGACGCC
ACAAACAACAAATCTTCTTGAAACGATTGATCAACTTATCATTGAAAACA
AATAACAATGGAATGAATACCGTTTTCAAGCAGAGTAACAAAGATGCTAA
TTCACGTACTCGAGCACGTTTTACGAAATTCGAGTCAATGTCATTCAAGT
TCAAAGCCAAGGAAAGTTCAATAATACTAACTGTTATCAAAATCATGTAG
AAAATNAGTCAATGTCATTCAAGTTCAAAGCCAAGGAAAGTTCAATAATA
CTAACTGTAATCAAAATCATGTAGAAAATCAATGCCATGTAACCAATCAT
ACGAAATTTACGTTTTAAAATACCACGTTGTAAGGTTGCTTCTGACCCTG
GGTTTGCTTCTTCACTCAAAATTGTCCCACCCATGGTATCCACGCGTAGA
GCAAGTAGCGAACGTACGAAAAAGTAAACAATTAAAGCTAACGGGATCAA
AACTTGAAAGAAAATCATAGCACAGATGAATAGGACTTCGGCATCATCTG
ACCAGCGTCCCATATGACAAAACCCATCAGTGCCCATTTTTGCAGTGGCC
ATGTACGGCATTCCTGGAATCGACGCAATTATCCATAACAATAAAATCAA
TGCCCATAATTtataaggtctcattttctTTGGACGAGCACTATTATAAA
CAACTTtgtaaaattcgaaaaataatgCTACGATTGTTGTAACAGTTACA
GTAACTGAAGCTAAATCTAACCATGTTAAGAATTGGCAACCGTGATCTCC
TATTGGTGCAATACTAGTTGTCAGCTCCACAAATAACATAAAAGATAATC
CAAATGAGCTAAGAAGTTCACCAAAAGTAAGATTCATCAATAGCGCATCG
AATGTATCGATGTTGGGGTACATGGATATTGAAACGGTTAGGATTCCGGT
ATTCAAGGCGACCCCGATAGCAAACGTTATGAAGGATGTCGCTTCTACGA
AGGATCGATAACTTCCCGATAGATCACCAACGTCGCAGTTAACGACGGTT
TGGAATCCATATCGTGATCCATTACACGAGGACATTCTGCTTGATTCCGT
GTTCGGCACTATTTTCCCATAAAATGTATTGGATTATTTGTTGAATATGT
AGATTTATTGGTTTTGacgtatttttcttttttttaacgattctaaaaac
aacaaattgatTATGGTTAATTATATTTGACTCAATTATTGAAACTGTCA
GTAATAGTGATTCATTTAAGGTCTCGCTGTGTAACAGGGGTCTTATTTAA
TTTCGACCTGGAAAAAGGCTAGTGTTGCCGACCCGAATGCATATCTACAG
TAATCATCAGCTCTATATGAGAGCACAACCCGGCTTGAATTGCAAGACTT
CTTCTCAACTAATCTTGATTTCTCCCGCTTTATAAAAACTACCCTGTTCA
ACCCTTCcaatatttgtttgttttagcATACTTTGGCAAACTGGAAATAT
GAACTATGTATATTTAT Run BLAST on NCBI transcript from alignment at sc0000243:304380..307024+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016584 ID=TCONS_00016584|Name=TCONS_00016584|organism=Clytia hemisphaerica|type=transcript|length=2645bp|location=Sequence derived from alignment at sc0000243:304380..307024+ (Clytia hemisphaerica)
tttcaaccaatcagctttgGTCCGCGGAGACATTGctatggtgcatatca
tgagtaaaagaaaacaaattgtaaacgGAGGGAGGAAGATATACATTTTG
AAAGAagctttattttttccaaaaaatgtccggattttaaattcaatttt
ttgataaattaaaattttcctaaaatttaaatatttttttaaagtttttt
tttttggttgatATAGAAAAAGAATGTTATAAAAAGGAATAAATATATAA
GAACGTAAGACCTAAAGTACTTAAAAAGGTTTAAATTGTAGACAATAGAT
GGAAGAAATGGTTGCAAGATTTGGACCAAAAGAAtttacattagaaagct
gacaATTGCTATGATTTTTTATTCGGAAACACTTTCATTCATACAGTATA
TTGGGCTTTGattgtcaaaaattaaaaatcatattCTTCTTTTATGGGTG
AGATAATTATAAGTCTAAGTTCATTCATAAGATAATTAACTCTGGCAGTT
CTCTGGTGATTTAGGGTCCAATGTACTATTATTGTAATCAATACATTTAT
TGTCATAAATATTCTTGGTCCATATTAGTTCTTCTAGGTTAgaaacataa
tattttgcaggACATAAAATATCATCATCTTTGTCCCTTGCAGAAATAAT
GTTCTTTCAATAGCAACTATGAAGTTTATAACATGTTATTATAGCTAATA
AGTTCCACAAAGTTTCACTTCGAGTAAGCAAAATCGTTATCTTTGGATTC
TTGGCTCCTTCCTGAACAATGAAGTCCCATTTTTAATGGCGCAACTCCTT
TTGATTCTCTTcacatttaattttttattcattgaTTTAAAATGATACTT
CTTAGCTGGAACAATGAAGTCTCATTTTGATTCTTCCCACTTTAACCTTT
CATTCATTGATTTAATGATACTCCTTAGCTGGAATCTAAAATGGCAACAT
CGTCTCTTTCAGTTTCACCAAACTCTTCATTAGCCAGTGCCATCTCTTCT
TCATTTGAACGATCATTGAACCCGTCCCCTTGTCCCTCGGATACAGTCTG
TTGGTACACATCATACCTTAAACTGTTGTAAATATCAGGGTCACGACGCC
ACAAACAACAAATCTTCTTGAAACGATTGATCAACTTATCATTGAAAACA
AATAACAATGGAATGAATACCGTTTTCAAGCAGAGTAACAAAGATGCTAA
TTCACGTACTCGAGCACGTTTTACGAAATTCGAGTCAATGTCATTCAAGT
TCAAAGCCAAGGAAAGTTCAATAATACTAACTGTTATCAAAATCATGTAG
AAAATNAGTCAATGTCATTCAAGTTCAAAGCCAAGGAAAGTTCAATAATA
CTAACTGTAATCAAAATCATGTAGAAAATCAATGCCATGTAACCAATCAT
ACGAAATTTACGTTTTAAAATACCACGTTGTAAGGTTGCTTCTGACCCTG
GGTTTGCTTCTTCACTCAAAATTGTCCCACCCATGGTATCCACGCGTAGA
GCAAGTAGCGAACGTACGAAAAAGTAAACAATTAAAGCTAACGGGATCAA
AACTTGAAAGAAAATCATAGCACAGATGAATAGGACTTCGGCATCATCTG
ACCAGCGTCCCATATGACAAAACCCATCAGTGCCCATTTTTGCAGTGGCC
ATGTACGGCATTCCTGGAATCGACGCAATTATCCATAACAATAAAATCAA
TGCCCATAATTtataaggtctcattttctTTGGACGAGCACTATTANTCG
ACGCAATAATCCATAACAATAAAATCAATGCCCATAATTtataaggtctc
attttctTTGGACGAGCACTATTATAAACAACTTtgtaaaattcgaaaaa
taatgCTACGATTGTTGTAACAGTTACAGTAACTGAAGCTAAATCTAACC
ATGTTAAGAATTGGCAACCGTGATCTCCTATTGGTGCAATACTAGTTGTC
AGCTCCACAAATAACATAAAAGATAATCCAAATGAGCTAAGAAGTTCACC
AAAAGTAAGATTCATCAATAGCGCATCGAATGTATCGATGTTGGGGTACA
TGGATATTGAAACGGTTAGGATTCCGGTATTCAAGGCGACCCCGATAGCA
AACGTTATGAAGGATGTCGCTTCTACGAAGGATCGATAACTTCCCGATAG
ATCACCAACGTCGCAGTTAACGACGGTTTGGAATCCATATCGTGATCCAT
TACACGAGGACATTCTGCTTGATTCCGTGTTCGGCACTATTTTCCCATAA
AATGTATTGGATTATTTGTTGAATATGTAGATTTATTGGTTTTGacgtat
ttttcttttttttaacgattctaaaaacaacaaattgatTATGGTTAATT
ATATTTGACTCAATTATTGAAACTGTCAGTAATAGTGATTCATTTAAGGT
CTCGCTGTGTAACAGGGGTCTTATTTAATTTCGACCTGGAAAAAGGCTAG
TGTTGCCGACCCGAATGCATATCTACAGTAATCATCAGCTCTATATGAGA
GCACAACCCGGCTTGAATTGCAAGACTTCTTCTCAACTAATCTTGATTTC
TCCCGCTTTATAAAAACTACCCTGTTCAACCCTTCcaatatttgtttgtt
ttagcATACTTTGGCAAACTGGAAATATGAACTATGTATATTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016584-exon-sc0000243-1491911889:304380..306096 | TCONS_00016584-exon-sc0000243-1491911889:304380..306096 | Clytia hemisphaerica | exon |
| TCONS_00016584-exon-sc0000243-1510915933:304380..306096 | TCONS_00016584-exon-sc0000243-1510915933:304380..306096 | Clytia hemisphaerica | exon |
| TCONS_00016584-exon-sc0000243-1575043694:304380..306096 | TCONS_00016584-exon-sc0000243-1575043694:304380..306096 | Clytia hemisphaerica | exon |
| TCONS_00016584-exon-sc0000243-1491911889:306175..307024 | TCONS_00016584-exon-sc0000243-1491911889:306175..307024 | Clytia hemisphaerica | exon |
| TCONS_00016584-exon-sc0000243-1510915933:306175..307024 | TCONS_00016584-exon-sc0000243-1510915933:306175..307024 | Clytia hemisphaerica | exon |
| TCONS_00016584-exon-sc0000243-1575043694:306175..307024 | TCONS_00016584-exon-sc0000243-1575043694:306175..307024 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000243 | supercontig | sc0000243:304380..307024 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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