TCONS_00016572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016572
Unique NameTCONS_00016572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length956

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016572 ID=TCONS_00016572|Name=TCONS_00016572|organism=Clytia hemisphaerica|type=transcript|length=956bp
gactcttgacagaaaatgctttgttttattgtcaatgatgacagtgccgt
ttaattttgttagatctgatatattgatggttgtaagtgcactttacaGT
TTtgatgttattagatgctgttttagagctttagagctagcctacctagc
cggtggctgctcttggaGGACAACCCTGCCGGTACTGTTAATTTACCCCA
CTAAGATTCTCCTGACTTTTCTGGGAGTTTTCCCAGTAGAGGGGGTGCCC
CCAGTGCACAAACGCCAAACTCtatgagattggaaagggttttttcTAAA
GAGGAAATAGAATCAATATGACTACAATTCCAAAGGCAAAGGTCAGCGAT
GAGATGAAAATCACTCATGAGGACCAAAAGATGATCAATGCATTTGCCAA
TAAGAATGCCAAACACAATGAGCTCAAAAATACTGTCGAGAAGAATAAGa
AAGCCCTTCAGAACTTGGAAGATGCAGGAGATGAACTTATGATGTGTGAT
GATACTGGTAGTGTCCCTGTTCAAATTGGAGAAGTCTTCCTTCGCATGAC
ACCTGATGATGCCCAAGTATATATCGACCagcaaaaagaagaaattgaaa
gtgaaatctCTAAATGTGACAAACAGATTGCTAACTATACACAGGAACTG
AAAAACTTGAAAGTCAAATTATACGCTAAATTTGGTAATAACATCAACCT
AGAGGAAGAAGAGGAAAGTTAGgggatttattaaaatttataTTCTGTTT
TCATATTATGTATCTATAGACCATTTTTATTTCTCttaaatacatttttt
gttaaattatgTATCCTattatttacgtttttttttctcttttgtttcct
tgcctccAGACAATTTTGATTATTCAGCAAGTTTCGGTTGATAAAAAATC
GTTCTGTCATTATTTCTCTGCCACGTCAAACTTAAGCACGTTGGTTTCAT
TTTCGG
Run BLAST on NCBI

transcript from alignment at sc0000243:40146..45209+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016572 ID=TCONS_00016572|Name=TCONS_00016572|organism=Clytia hemisphaerica|type=transcript|length=5064bp|location=Sequence derived from alignment at sc0000243:40146..45209+ (Clytia hemisphaerica)
gactcttgacagaaaatgctttgttttattgtcaatgatgacagtgccgt
ttaattttgttagatctgatatattgatggttgtaagtgcactttacaGT
TTtgatgttattagatgctgttttagagctttagagctagcctacctagc
cggtggctgctcttggaGGACAACCCTGCCGGTACTGTTAATTTACCCCA
CTAAGATTCTCCTGACTTTTCTGGGAGTTTTCCCAGTAGAGGGGGTGCCC
CCAGTGCACAAACGCCAAACTCtatgagattggaaagggttttttcTAAA
GGTATAGTATATTTTGTCTAACTTTCTGAAGCTCATTTTTCTCAACAAAC
CTACCTGCCTCGACACACTGGCGACTAGAGACGGACACTGGAGTCCTATA
GTCTTTTTCATTCCTCCGGTTGGCAAACAATATCCAATATATATATTATC
CTCCAGGGATGCATGGTCTcttattttacctttttttttgtaaattcctA
CCTTCTattctgattttctgactttctgagtTTCTAGCTAGCTAGCTAAC
TGTATCctactgtgaagtcgggtaacttgcatcagtggagggaaacttgc
atagctatcaaatgactgaccaatcaaggcagcaaaatttcaaaacaaat
gaactacgcagctccgctcgcagctctagtctaccatttttgtctTGACT
TAACTTTGAATCActaaccagccaggtcattcatttgagggctattcATG
TTAgcatccactgatgcaagttaccttaTCTCACGGtatgtatttttctg
aaatttgcctgtATATACCCGGTGAAATAGGTCTCCTCCTCAGGATCGAA
CAAATGCAAGCAATCTTTGATTCGCAAACCCAATGCAATGCAAACAGCCT
TATGTAAGTCCTGAATTTTAGCAAGGCTTGAAATAAAGATCTCAAGTGGG
TCAGACAAAATAAAATGTCCGATCAGGAttgttttagcttgaaaattatg
atttttgggtcgctatttttgaagctatttgggtcggaccttatttcgag
ccctgtttTAGGGCAAAAAGTCTTGAGAAGCCTTATGTCCAACACATTTG
GTTGATGGACATAGTAGGGCATTTTAAAGcttgatttttgcttgaaactt
gCTTAGTATATATGAAGATTTTCAGTTCAATTCAATATAGCCTTCTGTCG
AGCAAGCTATTAAAACCTCTTTTTAACCACAAAAAGATAACTATATATAA
TACCCCCCATAATATCAAAAGTATGGACTCTTGACattatttattttcat
gttaGTAGCACATAAAACCCTagtcaattatctcaaaataaaaaatggac
TTGTTTTGAATTAACACAGCAATttggaagggggggggggggaaatttca
gttaaaaacggctaaaaatggGATTGGTGTACTTTGTAAAGAAttgtttc
attaatttttttcaatgtttttttattacAGTTCTGATTAGTTTTCATAC
CAAAATGATCATCATAGCACATGACTGCATATGACTGAATTTTGTACAAA
TTCATAGGAGTCAGTTGAAATTATGGGTGGGAAAAATAAACGTAGTACAG
GGTGGAAATGACCCAAGTGGGAAATAGCAAGAAAAATGAATGTATATGTA
TGTTTATTATGTTGGACTgtgaaaaagaatattttgatttattgtttatg
tttatgtatGTTTATTACAGATTTGAGAGTAAGATAAGGGAATGGTTgca
attaaagaaaattttatcaGTAAACTTACTTACAGTAAATTTCACaacaa
attttttacattcTTTTTATAACTCATGACAGAGGAAATAGAATCAATAT
GACTACAATTCCAAAGGCAAAGGtttgaattcttttttcttatttgagaa
taattttaacttttttttttcatttttcataacATGCACATTTTTTAACT
AAGCAACCCAGAGTTGCTTAGTATTATTTAGcttcatttcaaaaaaattt
tatattgacCACCCCAATTTTATACCATATTCATGCTCATTTGGTCAAGG
ACTATTGCCTGTCATCTAGGCACTTATAGCatctatcaaaacttttcctt
tAGGAGGTGTAGAAATATTTTGGTTGATTTCAGAGCTCGAgccttagctc
tagtttagacgaccccatttttgccctgcctattctaattgtggattaaa
gttggcataaagtgggctgtctaaagtcaatgcattgccctcttttgatg
TCAatacaatgtcttctttcaatcttttccaagcaaagattttaactgcc
aactttgtgcccactttctgattactctaacaattagaataggtagggca
gaaagtcggccgtctaaactagagcttaggaATTTGTTTATAATtgtata
tttttcatttgattcagtcactttaaatatttttattcaatgcAAATTTT
CTACTCATCATTTCAGGTCAGCGATGAGATGAAAATCACTCATGAGGACC
AAAAGATGATCAATGCATTTGCCAATAAGAATGCCAAACACAATGAGCTC
AAAAATACTGTCGAGAAGAATAAGGTACCtttaagtggattaaattttgt
gtgggttaattttcatgattttcacaaattttggctatttttacAATAAT
TATAGTCGGacttgcaaaatatttttaggcattttttgtgaatttaactt
gaaaacagtGTAGCAATTTACGCAAAATCCAACAAGATGGAAAACTGAGT
TTGAGGGACCTAATTTTTAACAAACTGAACTGGGGGTTAAATTCTGATTA
AAGTACATTTTTTTCAACACAGTGGCTCAGTTTTGAAAAGCCTCTAGTCT
CTTCCACTGCTTTGATACTGTAATAACTGCCTGGAAAGGGATTTGCACCC
CAACTTACAAAAGCTTGAAACCTCCTACAAACCAGTACAAACCTTTTTCA
ATAaatcttttgttatttaattttctttaatttgttGCATTTTTCGGTTT
TTCAACTTTAAGGAGTCACTTAAAATATCCATctatttatctatctatct
atctatctattataTTTTTAAGTATTAAAAAGGTCCTAAGACCCATATCC
ATACATGcaaattataagaaaataaaaataaaaagtatgtAAAATTTTAG
CGCTAAGACAAGGCACAAAGAAATAAATTAGCTCAAGTTGGCTAAATAAA
AGTGTAAGTTGTAATATTTTTCCAGTAGGGGCCACCTAAATCTAGGGGCC
ACCTGAATTCTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGGGcaacctgaattcttaggggccacctgaa
ttcttaggggccacctgaattcttaggggccacctgaattcttaggggcc
acctgaattcttaggggcaacctgaattcttaggggcaacctgaattctt
aggggcaacctgaattcttaggggcaacctgaattcttaggggccacctg
aattcttaggggccacctgaattcttaggggtcacctgaattcttaagGG
CCACCTGAGTTCTTAGGGGCCACCTGAATTCTTAGAGGCCACCTGAATCC
TTAGGGgccacctgaattcttaggggtcacctgaattcttagggaccacc
tgatttcttagaggccacctgaattcttaggggccACCAAGAACCTGCTT
ATGATTATTTGTCTgataaaatgataattttgCATGTGAATGACATTGTG
AAGTTACATccttcttttacttttttcagaAAGCCCTTCAGAACTTGGAA
GATGCAGGAGATGAACTTATGATGTGTGATGATACTGGTAGTGTCCCGTA
TCTTTTCCAATCATTCTTAATACAATGTGGTTTATTGACAGTATTATTAT
ATAACCATAATCATATATCTTAGTCTtgatttcaaaaacaaattacGAAA
TTATTACTGTCGCGGGAGTACcttagggaagaaattttcgcagaatttaa
attcggcgaaaatttcttcccttaagcttttttcacatgtacgtaaaatt
ttacttaagaccttgaagggtggggaatttccctaagcttacgtagtgtt
ttagGGCCTGATGTAGAGattgcttacgttcaaaaagttttgaacggaag
gaaaagtcatgtaagaccctcttaatcaacaaaaactctacataatgtcg
gggaaattcccaaaagacagccttacgaacgattttccGTAAGGTGTAAA
GTAAagttttacgtgcatgtgaaaaaagctttaaggcACGGGATTGTTAA
AAATCTCGCTAAGGGTCTAAGGTTCGTAAATTAATAAATTCTAATTTCAA
GggttacaaaaaaaataaaagtttcgtCCCTAAAAAGGCAAATTTaggga
aaaatatttctaaagcttacaaatttttatcgatttttgaCCCAAAAAAT
TCCGTGGTACAAGTAATCTCTTTTTATAAGAGAATATCAATTTTCGTCAC
TAGAACGCAAATAAATGAAGTTATATAGtcgtgtttttattttgtttgga
aATGACAATTGTTAGCAGGGTACAAGGTTCGTCTCTGTTTTCTATGAATT
ATTCTTTAACTCTGAAAATATGCAGTGTTCAAATTGGAGAAGTCTTCCTT
CGCATGACACCTGATGATGCCCAAGTATATATCGACCagcaaaaagaaga
aattgaaagtgaaatctCTAAATGTGACAAACAGATTGCTAACTATACAC
AGGAACTGAAAAACTTGAAAGTCAAATTATACGCTAAATTTGGTAATAAC
ATCAACCTAGAGGAAGAAGAGGAAAGTTAGgggatttattaaaatttata
TTCTGTTTTCATATTATGTATCTATAGACCATTTTTATTTCTCttaaata
cattttttgttaaattatgTATCCTattatttacgtttttttttctcttt
tgtttccttgcctccAGACAATTTTGATTATTCAGCAAGTTTCGGTTGAT
AAAAAATCGTTCTGTCATTATTTCTCTGCCACGTCAAACTTAAGCACGTT
GGTTTCATTTTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009263XLOC_009263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016572-exon-sc0000243-1491911889:40146..40446TCONS_00016572-exon-sc0000243-1491911889:40146..40446Clytia hemisphaericaexon
TCONS_00016572-exon-sc0000243-1510915933:40146..40446TCONS_00016572-exon-sc0000243-1510915933:40146..40446Clytia hemisphaericaexon
TCONS_00016572-exon-sc0000243-1575043694:40146..40446TCONS_00016572-exon-sc0000243-1575043694:40146..40446Clytia hemisphaericaexon
TCONS_00016572-exon-sc0000243-1491911889:41978..42017TCONS_00016572-exon-sc0000243-1491911889:41978..42017Clytia hemisphaericaexon
TCONS_00016572-exon-sc0000243-1510915933:41978..42017TCONS_00016572-exon-sc0000243-1510915933:41978..42017Clytia hemisphaericaexon
TCONS_00016572-exon-sc0000243-1575043694:41978..42017TCONS_00016572-exon-sc0000243-1575043694:41978..42017Clytia hemisphaericaexon
TCONS_00016572-exon-sc0000243-1491911889:42612..42719TCONS_00016572-exon-sc0000243-1491911889:42612..42719Clytia hemisphaericaexon
TCONS_00016572-exon-sc0000243-1510915933:42612..42719TCONS_00016572-exon-sc0000243-1510915933:42612..42719Clytia hemisphaericaexon
TCONS_00016572-exon-sc0000243-1575043694:42612..42719TCONS_00016572-exon-sc0000243-1575043694:42612..42719Clytia hemisphaericaexon
TCONS_00016572-exon-sc0000243-1491911889:43925..43992TCONS_00016572-exon-sc0000243-1491911889:43925..43992Clytia hemisphaericaexon
TCONS_00016572-exon-sc0000243-1510915933:43925..43992TCONS_00016572-exon-sc0000243-1510915933:43925..43992Clytia hemisphaericaexon
TCONS_00016572-exon-sc0000243-1575043694:43925..43992TCONS_00016572-exon-sc0000243-1575043694:43925..43992Clytia hemisphaericaexon
TCONS_00016572-exon-sc0000243-1491911889:44771..45209TCONS_00016572-exon-sc0000243-1491911889:44771..45209Clytia hemisphaericaexon
TCONS_00016572-exon-sc0000243-1510915933:44771..45209TCONS_00016572-exon-sc0000243-1510915933:44771..45209Clytia hemisphaericaexon
TCONS_00016572-exon-sc0000243-1575043694:44771..45209TCONS_00016572-exon-sc0000243-1575043694:44771..45209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:40146..45209 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.9698	45.9822	33.5931	39.1853	12.4639	14.8582	23.6919	28.1937	27.4663	22.4295	26.7079	23.7601	20.0214	21.806	25.6291	24.0231	33.7965	34.354	14.2184	15.2007	26.0321	18.678	28.9837	29.0134	47.4478	43.0357	23.5412	19.3281	19.0483	15.4448
Blast
[Close]
BLAST of TCONS_00016572 vs. Swiss-Prot (Human)
Match: PFD4 (Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.735e-24
Identity = 49/119 (41.18%), Postives = 80/119 (67.23%), Query Frame = 3 
Query:  348 DEMKITHEDQKMINAFANKNAKHNELKNTVEKNKKALQNLEDAGDELMMCDDTG-SVPVQIGEVFLRMTPDDAQVYIDQQKEEIESEISKCDKQIANYTQELKNLKVKLYAKFGNNINL 701
            +++ +T EDQ+ IN FA   ++  ELK  +E  KK LQNLEDA D++M+ DD    +P QIG+VF+  + ++ Q  +++ K+ ++ EI   + ++ +  + L +LKV+LYAKFG+NINL
Sbjct:   11 EDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINL 129
The following BLAST results are available for this feature:
BLAST of TCONS_00016572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PFD48.735e-2441.18Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 ... [more]
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