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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016570 ID=TCONS_00016570|Name=TCONS_00016570|organism=Clytia hemisphaerica|type=transcript|length=1302bp
TGACCCGCGACCCAGATGGTGAATTCAAATTTATTGGCCACATTGTGGAC
CATTTTGCCAAGTTCCATGTCCTGTTTGCTCTTAAAACAAAGGAGCCCAA
GGTTGTCGCCAAAAACATCAAAGTCCGCTATCTTTCTTATTTTGGATTGC
CAAAAATTTTACAATCTGATAATGGGACTGAGTTTGTAGACCTGATAATC
AAGGCAGTTGTTCTTCTTTGGCCTGGCAATGCAAAAATTATCAATGGTTC
AGTAGGGCACTCCCAATCCCAAGGTAAACTTTTTTATAGTTTTAATGTTA
CATTAGGCACTATGGATTTTATCACTTAATTCTTGCCGGAGTACGGGAAA
ATTCACTTTTATTAAGCATTATTCCTAGAATTCATTAATTTATTTTCTAG
TTGTAGTATAGGTGTCGAAATACCGACAGTACTCTAAAGGGCCATAACct
ttaaagaaaatacttttttttgcttCGTTTTTGCATTTCTGGAATCATCC
TCAAATTCTGCGTCGATCGGTAGGCAATTTGTAGGCACTTAAAGCAGAAC
CAAGGCGGCTGGAGCCtttgaaagtcaaactttcgatgAAATTCAATGAG
GTCAAAATTCTTAAAGTGGCTTGGCAGTGAACTTGTCAGTATTAGGTAAT
TTTTTTCATCGGGACGGATCCTTGACCgggtcactgaaacaggggtgtat
cgTACGTTTTCTCTTATCATTTTGTCAACAAATTTTTGAGCCAACCAGAG
CGTAATTGATAATCTTCTCCCGTCTCTGAAGTATCTGAGATTGTTCAGTA
CCTGAAAtaaggagaaaacaaaaatatacgatGATCGGATTAATTTCTCT
ATTCTTTTTATCGACTCAGCTATCACACCCAGTATCACTGCGAAAGTAGA
AAAGGTTAGCTTTTCACGGGGCATTTGTAGCGGTCGAATGAtacttgaga
caggggtattcaaTGGACGCTAAACGTCAAAAACAGTGTTCATTTAAAAT
GTCCGTAAACAACGGGATATGAACACTGGGTTTTTTTCAAGCGCAATTTC
TATTAACCTAACATGgcctgtgaaacaggggtgtgggTGTGGGTGTGCTA
GACTCTTCTTAGGTAAAGAAGAAATACGCACCTGGTGGGTGTGATAATTC
AATGCTTTTAGATTCAATGCTTTCTATCGTAACCGCGGAAAATAACGACC
ATATAATGTGTTTGATGACTCTATCGATCGATGCTtcgattaaaatttga
tattttcgtaaGTTGTCCAGTTTCTCTAATgctcttcttttttaatcatt
ta Run BLAST on NCBI protein sequence of TCONS_00016570-protein >TCONS_00016570-protein ID=TCONS_00016570-protein|Name=TCONS_00016570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
TRDPDGEFKFIGHIVDHFAKFHVLFALKTKEPKVVAKNIKVRYLSYFGLP
KILQSDNGTEFVDLIIKAVVLLWPGNAKIINGSVGHSQSQGKLFYSFNVT
LGTMDFIT Run BLAST on NCBI transcript from alignment at sc0000243:35772..37131+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016570 ID=TCONS_00016570|Name=TCONS_00016570|organism=Clytia hemisphaerica|type=transcript|length=1360bp|location=Sequence derived from alignment at sc0000243:35772..37131+ (Clytia hemisphaerica)
TGACCCGCGACCCAGATGGTGAATTCAAATTTATTGGCCACATTGTGGAC
CATTTTGCCAAGTTCCATGTCCTGTTTGCTCTTAAAACAAAGGAGCCCAA
GGTTGTCGCCAAAAACATCAAAGTCCGCTATCTTTCTTATTTTGGATTGC
CAAAAATTTTACAATCTGATAATGGGACTGAGTTTGTAGACCTGATAATC
AAGGCAGTTGTTCTTCTTTGGCCTGGCAATGCAAAAATTATCAATGGTTC
AGTAGGGCACTCCCAATCCCAAGGTAAACTTTTTTATAGTTTTAATGTTA
CATTAGGCACTATGGATTTTATCACTTAATTCTTGCCGGAGTACGGGAAA
ATTCACTTTTATTAAGCATTATTCCTAGAATTCATTAATTTATTTTCTAG
TTGTAGTATAGGTGTCGAAATACCGACAGTACTCTAAAGGGCCATAACct
ttaaagaaaatacttttttttgcttCGTTTTTGCATTTCTGGAATCATCC
TCAAATTCTGCGTCGATCGGTAGGCAATTTGTAGGCACTTAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGCACTTAA
AGCAGAACCAAGGCGGCTGGAGCCtttgaaagtcaaactttcgatgAAAT
TCAATGAGGTCAAAATTCTTAAAGTGGCTTGGCAGTGAACTTGTCAGTAT
TAGGTAATTTTTTTCATCGGGACGGATCCTTGACCgggtcactgaaacag
gggtgtatcgTACGTTTTCTCTTATCATTTTGTCAACAAATTTTTGAGCC
AACCAGAGCGTAATTGATAATCTTCTCCCGTCTCTGAAGTATCTGAGATT
GTTCAGTACCTGAAAtaaggagaaaacaaaaatatacgatGATCGGATTA
ATTTCTCTATTCTTTTTATCGACTCAGCTATCACACCCAGTATCACTGCG
AAAGTAGAAAAGGTTAGCTTTTCACGGGGCATTTGTAGCGGTCGAATGAt
acttgagacaggggtattcaaTGGACGCTAAACGTCAAAAACAGTGTTCA
TTTAAAATGTCCGTAAACAACGGGATATGAACACTGGGTTTTTTTCAAGC
GCAATTTCTATTAACCTAACATGgcctgtgaaacaggggtgtgggTGTGG
GTGTGCTAGACTCTTCTTAGGTAAAGAAGAAATACGCACCTGGTGGGTGT
GATAATTCAATGCTTTTAGATTCAATGCTTTCTATCGTAACCGCGGAAAA
TAACGACCATATAATGTGTTTGATGACTCTATCGATCGATGCTtcgatta
aaatttgatattttcgtaaGTTGTCCAGTTTCTCTAATgctcttcttttt
taatcattta Coding sequence (CDS) from alignment at sc0000243:35772..37131+ >TCONS_00016570 ID=TCONS_00016570|Name=TCONS_00016570|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0000243:35772..37131+ (Clytia hemisphaerica)
ACCCGCGACCCAGATGGTGAATTCAAATTTATTGGCCACATTGTGGACCA
TTTTGCCAAGTTCCATGTCCTGTTTGCTCTTAAAACAAAGGAGCCCAAGG
TTGTCGCCAAAAACATCAAAGTCCGCTATCTTTCTTATTTTGGATTGCCA
AAAATTTTACAATCTGATAATGGGACTGAGTTTGTAGACCTGATAATCAA
GGCAGTTGTTCTTCTTTGGCCTGGCAATGCAAAAATTATCAATGGTTCAG
TAGGGCACTCCCAATCCCAAGGTAAACTTTTTTATAGTTTTAATGTTACA
TTAGGCACTATGGATTTTATCACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016570-exon-sc0000243-1491911889:35772..36305 | TCONS_00016570-exon-sc0000243-1491911889:35772..36305 | Clytia hemisphaerica | exon |
| TCONS_00016570-exon-sc0000243-1510915933:35772..36305 | TCONS_00016570-exon-sc0000243-1510915933:35772..36305 | Clytia hemisphaerica | exon |
| TCONS_00016570-exon-sc0000243-1575043694:35772..36305 | TCONS_00016570-exon-sc0000243-1575043694:35772..36305 | Clytia hemisphaerica | exon |
| TCONS_00016570-exon-sc0000243-1491911889:36364..37131 | TCONS_00016570-exon-sc0000243-1491911889:36364..37131 | Clytia hemisphaerica | exon |
| TCONS_00016570-exon-sc0000243-1510915933:36364..37131 | TCONS_00016570-exon-sc0000243-1510915933:36364..37131 | Clytia hemisphaerica | exon |
| TCONS_00016570-exon-sc0000243-1575043694:36364..37131 | TCONS_00016570-exon-sc0000243-1575043694:36364..37131 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000243 | supercontig | sc0000243:35772..37131 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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