TCONS_00016567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016567
Unique NameTCONS_00016567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016567 ID=TCONS_00016567|Name=TCONS_00016567|organism=Clytia hemisphaerica|type=transcript|length=292bp
Nagaaaaatacaatgaaaaagttagtacagtgtactaaaagggtggtcct
ctgagaaaaatacaatgaaaaagttagtataCTGTACTAGAAAGGTTGGT
GTTCTGATTTGATACACACGAGAAGTTAGTACATTGTACTAATTTCAtgg
taaaaacacacaaacccAGTGAATTCCCATGTATATTTGCCCTAATTTGC
CAGGTTCAAGCTGGTCCGAGACCTTCAAGTCAAGGCTGGTTAAGCTATAC
CTACAAATTGGCACACTGATTTTCTCCCAATGTTTCCTGTTT
Run BLAST on NCBI

transcript from alignment at sc0000241:340315..340606

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016567 ID=TCONS_00016567|Name=TCONS_00016567|organism=Clytia hemisphaerica|type=transcript|length=292bp|location=Sequence derived from alignment at sc0000241:340315..340606 (Clytia hemisphaerica)
AAACAGGAAACATTGGGAGAAAATCAGTGTGCCAATTTGTAGGTATAGCT
TAACCAGCCTTGACTTGAAGGTCTCGGACCAGCTTGAACCTGGCAAATTA
GGGCAAATATACATGGGAATTCACTgggtttgtgtgtttttaccaTGAAA
TTAGTACAATGTACTAACTTCTCGTGTGTATCAAATCAGAACACCAACCT
TTCTAGTACAGtatactaactttttcattgtatttttctcagaggaccac
ccttttagtacactgtactaactttttcattgtatttttctN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009261XLOC_009261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016567-exon-sc0000241-1491911889:340315..340606TCONS_00016567-exon-sc0000241-1491911889:340315..340606Clytia hemisphaericaexon
TCONS_00016567-exon-sc0000241-1510915933:340315..340606TCONS_00016567-exon-sc0000241-1510915933:340315..340606Clytia hemisphaericaexon
TCONS_00016567-exon-sc0000241-1575043694:340315..340606TCONS_00016567-exon-sc0000241-1575043694:340315..340606Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000241supercontigsc0000241:340315..340606 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.71566	2.00928	3.33424	0.724651	4.69998	1.40513	3.37739	2.97195	2.65541	4.30507	1.88569	2.3328	2.34396	1.84679	0.267883	0.319576	0.350252	0	0	0.673177	0	1.4797	0.613571	0	1.87457	1.86962	2.37513	0.789434	3.60395	0.66579
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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