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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016532 ID=TCONS_00016532|Name=TCONS_00016532|organism=Clytia hemisphaerica|type=transcript|length=1879bp
GGATTTATTACATTTATTTTTCACTAAATAACATCAATCATATCAAAACT
ACTAGAGATATATTACTATATAATAGATGTGGAAATTCTATGTGGAATTT
TTTACAGTTtcaggttttaatttttttagggCTTAAGTGGAGGTacagtt
tctttttttctacagGACTGACCAATGTACTTGTTTTTGCCAAGATCAAA
AATAAtcgccggggggggggggtcaactgCTCTAAACATCGGATATTCAA
CAATGAAAGAATTTCATAATCTTACataataaatttatttatttgttgaT
ACCGACATATTTGTGTAAAACATTTGGTAATTTTTTACTCATGTAATCTA
CACTTAACCATTTCATACATGCCAGACGAGCTAAATGCTTTAAATTCATC
CCATTGTGTGATTCAATTGTTTcaatcttcaaaatttgatcTCCGTATAA
ATATTCCAAAGTCGCAACTTCGCCCATGTGCCAGTTATAATCCAGAACTG
ATAGTCCTTCCATGGAAAAACAAACTAACTTTTGATCGCTTTGATCAAAT
ATTTTATTCCCAGAATAAATGTCATAAAGTTTCCTGATGGAGTCTTCGTT
TTGGCCATAATGATACGGAGCGTGAAGCCTTTCAAAATACACGTTTCCAA
GCCCTTTAATCAATCTATGAGTAAGGATATCACATTCAAGATGCAAGTCA
TCAATCATGAAATCCCACAAAGTTGTCATTCCGCTTTGATTGATGCTAAA
TACTTGTACCATCTCTTTTCTTGAACcccattttaaaaacaaatcATTTT
CGATATGATCTACTATAGTGCCAGAGTCGTCAAAATGATACTGATGTGAT
AGATTCCCATCGAAATCATATGCAAGGATCTCATTCTCCTCAACCTCAGC
AAAAATCTCATTTCCATCCCCAACTTTATATGAGTTAAAAAGATAAAACA
TTTCTGCAGCTCTGTTAAAGAAAATATACTGCAAAATATACTCCCTTTCA
TTTTCTAATACGAGTCGTTTCAAATACGAGATTTCTTGATCGTTGTACTG
TATGAAATCTAGTATGTAATCTCCTCGTCGTGCTAAAAAACTATTAAAAG
AGATCCAAATGTCTTACTATCCCAAAGTCTTGATCCCCTTCCAGTAACTC
GAATTTCTGGGTTTGGATATTTAAGTTTAACAGTATTAACTGTTGACTTA
CTATCTATTTCTATTGTCTCTGATGTTCCTAGATACGATTTCAAACAACC
ATGGTATATTGTGATTTCTTTAGTAATCCCTCGGGGCATCCCATTTTCCA
CTACACCAGACGTTTGAATAAAATCATCAAGGACGAACCAATTAGTTGAA
AGAATGTCATACTGGATACTATCAAGAAGCCAATTTACACGAGGGGATGA
ATAGTTGATGCGAATCTTGATCACGGACGACAcaatgttttttatctttt
catcATAATTGAAAACAACAGCTTTAATGAATCTCTTAGGATCAGGATAT
AAAACGTCTTGTATACCTTCACCCGTGTTTGTACTCCTTTCGTcggaaaa
cataacaaaatatTTCCCTGTATAGTCAAATCCACATAATTCATCATCAA
ACATTTCCAAATAGTTATAATAGTTATCAGAGTCATTTTCATAAAGATAG
ATGTAGCCAAGGCNTCAAATCCACATAATTCATCATCAAACATTTCCAAA
TAGTTATAATAGTTATCAGAGTCATTTTCATAAAGATAGATCTAGCCAAG
GCCCCCATTATATGGTAGGAATGATTGTCGAAGTGGAGCAGCGGccattt
caaaaagttttgttcTTTTGCAAGAAGTGTGATACAAGATTGTTGCACTC
ACCTCCCCTTTTCATGAAGGCCATACAAT Run BLAST on NCBI transcript from alignment at sc0000241:150549..152475+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016532 ID=TCONS_00016532|Name=TCONS_00016532|organism=Clytia hemisphaerica|type=transcript|length=1927bp|location=Sequence derived from alignment at sc0000241:150549..152475+ (Clytia hemisphaerica)
GGATTTATTACATTTATTTTTCACTAAATAACATCAATCATATCAAAACT
ACTAGAGATATATTACTATATAATAGATGTGGAAATTCTATGTGGAATTT
TTTACAGTTtcaggttttaatttttttagggCTTAAGTGGAGGTacagtt
tctttttttctacagGACTGACCAATGTACTTGTTTTTGCCAAGATCAAA
AATAAtcgccggggggggggggtcaactgCTCTAAACATCGGATATTCAA
CAATGAAAGAATTTCATAATCTTACataataaatttatttatttgttgaT
ACCGACATATTTGTGTAAAACATTTGGTAATTTTTTACTCATGTAATCTA
CACTTAACCATTTCATACATGCCAGACGAGCTAAATGCTTTAAATTCATC
CCATTGTGTGATTCAATTGTTTcaatcttcaaaatttgatcTCCGTATAA
ATATTCCAAAGTCGCAACTTCGCCCATGTGCCAGTTATAATCCAGAACTG
ATAGTCCTTCCATGGAAAAACAAACTAACTTTTGATCGCTTTGATCAAAT
ATTTTATTCCCAGAATAAATGTCATAAAGTTTCCTGATGGAGTCTTCGTT
TTGGCCATAATGATACGGAGCGTGAAGCCTTTCAAAATACACGTTTCCAA
GCCCTTTAATCAATCTATGAGTAAGGATATCACATTCAAGATGCAAGTCA
TCAATCATGAAATCCCACAAAGTTGTCATTCCGCTTTGATTGATGCTAAA
TACTTGTACCATCTCTTTTCTTGAACcccattttaaaaacaaatcatTTT
CGATATGATCTACTATAGTGTCAAAATGATACTGATGAGACNCATTTTCG
ATATGATCTACTATAGTGCCAGAGTCGTCAAAATGATACTGATGTGATAG
ATTCCCATCGAAATCATATGCAAGGATCTCATTCTCCTCAACCTCAGCAA
AAATCTCATTTCCATCCCCAACTTTATATGAGTTAAAAAGATAAAACATT
TCTGCAGCTCTGTTAAAGAAAATATACTGCAAAATATACTCCCTTTCATT
TTCTAATACGAGTCGTTTCAAATACGAGATTTCTTGATCGTTGTACTGTA
TGAAATCTAGTATGTAATCTCCTCGTCGTGCTAAAAAACTATTAAAAGAG
ATCCAAATGTCTTACTATCCCAAAGTCTTGATCCCCTTCCAGTAACTCGA
ATTTCTGGGTTTGGATATTTAAGTTTAACAGTATTAACTGTTGACTTACT
ATCTATTTCTATTGTCTCTGATGTTCCTAGATACGATTTCAAACAACCAT
GGTATATTGTGATTTCTTTAGTAATCCCTCGGGGCATCCCATTTTCCACT
ACACCAGACGTTTGAATAAAATCATCAAGGACGAACCAATTAGTTGAAAG
AATGTCATACTGGATACTATCAAGAAGCCAATTTACACGAGGGGATGAAT
AGTTGATGCGAATCTTGATCACGGACGACAcaatgttttttatcttttca
tcATAATTGAAAACAACAGCTTTAATGAATCTCTTAGGATCAGGATATAA
AACGTCTTGTATACCTTCACCCGTGTTTGTACTCCTTTCGTcggaaaaca
taacaaaatatTTCCCTGTATAGTCAAATCCACATAATTCATCATCAAAC
ATTTCCAAATAGTTATAATAGTTATCAGAGTCATTTTCATAAAGATAGAT
GTAGCCAAGGCNTCAAATCCACATAATTCATCATCAAACATTTCCAAATA
GTTATAATAGTTATCAGAGTCATTTTCATAAAGATAGATCTAGCCAAGGC
CCCCATTATATGGTAGGAATGATTGTCGAAGTGGAGCAGCGGccatttca
aaaagttttgttcTTTTGCAAGAAGTGTGATACAAGATTGTTGCACTCAC
CTCCCCTTTTCATGAAGGCCATACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016532-exon-sc0000241-1491911889:150549..151343 | TCONS_00016532-exon-sc0000241-1491911889:150549..151343 | Clytia hemisphaerica | exon |
| TCONS_00016532-exon-sc0000241-1510915933:150549..151343 | TCONS_00016532-exon-sc0000241-1510915933:150549..151343 | Clytia hemisphaerica | exon |
| TCONS_00016532-exon-sc0000241-1575043694:150549..151343 | TCONS_00016532-exon-sc0000241-1575043694:150549..151343 | Clytia hemisphaerica | exon |
| TCONS_00016532-exon-sc0000241-1491911889:151392..152475 | TCONS_00016532-exon-sc0000241-1491911889:151392..152475 | Clytia hemisphaerica | exon |
| TCONS_00016532-exon-sc0000241-1510915933:151392..152475 | TCONS_00016532-exon-sc0000241-1510915933:151392..152475 | Clytia hemisphaerica | exon |
| TCONS_00016532-exon-sc0000241-1575043694:151392..152475 | TCONS_00016532-exon-sc0000241-1575043694:151392..152475 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000241 | supercontig | sc0000241:150549..152475 + |
Blast
The following BLAST results are available for this feature:
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