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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016529 ID=TCONS_00016529|Name=TCONS_00016529|organism=Clytia hemisphaerica|type=transcript|length=2534bpRun BLAST on NCBI transcript from alignment at sc0000241:141300..162173+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016529 ID=TCONS_00016529|Name=TCONS_00016529|organism=Clytia hemisphaerica|type=transcript|length=20874bp|location=Sequence derived from alignment at sc0000241:141300..162173+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00016529 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3) HSP 1 Score: 466.077 bits (1198), Expect = 1.842e-172 Identity = 253/559 (45.26%), Postives = 371/559 (66.37%), Query Frame = 1
Query: 319 QIKANKEALKASLSEEHRYIISIVAFKLDLPIXXXXXXXXXXXXGLELFANFLRIGGQRTLLFYYQHCD----GDIAAEARAKAIHHTQAEDPLTLFITDGTTKPLIGHLLYFIKPSSQKELKIRNIHEDVCFGLMDCSNGCGILYAIGQMMANVYTPAISAID-KWGDLDASPAGILHRREFLKTLSSFTHFVDATHIALSDTIELAKCEVIDTTEYTTTKQYLSVANNAXXXXXXXXXXXXWSKQIEQVLAESEQMRKEADDTGPIAELEHWRQRRAKFNTLLDQMKSSDCKTVIAILIHAKSKVLKIWKELDNRITDAANEAKDNVKYLDTLEKSCQPLYQSNPIKMITAIPKLISAIQMIHSTSQYYNTSQRMTSLFIKVTNQMVTACKDYITDNQLNRIWDQPRKPLIEKLENCVKLNQEYQNCFQKTKQKIEEDPSEKPFEFSEMYIFGKFDTFCRRLQKITELMTYLETYSVLHVSKIEGIDVLAGRFDNIYKNMKQKSYDILDHRKTDFDHDFEEFKVRINELEIQLQCFMDDCFDKIPTTIQALQLLESF 1980
++K KEA +A L H Y+ +IVA LDL VE + +E +GG R L+FYYQ + G + + + + + P +F+T+G L G ++FI+ K + NIH++V F ++D ++G G+L ++ +++++++ PA+ A WG+L+ R+EFL +L F + + +L + + L KC++++ YL++ANN E L ++E+ +++W KQ EQVLAE+ Q+ KEADD GP AELEHW++R +KFN LL+Q+KS D K V+A+L AKSK+LK W+E+D RITDA NEAKDNVKYL TLEK C PLY S+P+ M+ AIP LI+AI+MI+S S YYNTS+++TSLF+KVTNQ+++ACK YIT+N IW+QP+ + EK+ + +KL QEYQ CF KTKQK++++P+ K F+FSEMYIFGKF+TF RRL KI ++ T L+TYSVL S IEG++ +A ++ I +K+K Y+ LD RK DFD D+EEF + N+L +L+ FMD F KI T QAL++L+ F
Sbjct: 21 RLKGEKEAKRALLDARHNYLFAIVASCLDLN-KTEVEDAILEGNQIERIDQLFAVGGLRHLMFYYQDVEEAETGQLGSLGGVNLVS-GKIKKP-KVFVTEGNDVALTGVCVFFIRTDPSKAITPDNIHQEVSFNMLDAADG-GLLNSVRRLLSDIFIPALRATSHGWGELEGLQDAANIRQEFLSSLEGFVNVLSGAQESLKEKVNLRKCDILELKTLKEPTDYLTLANNPETLGKIEDCMKVWIKQTEQVLAENNQLLKEADDVGPRAELEHWKKRLSKFNYLLEQLKSPDVKAVLAVLAAAKSKLLKTWREMDIRITDATNEAKDNVKYLYTLEKCCDPLYSSDPLSMMDAIPTLINAIKMIYSISHYYNTSEKITSLFVKVTNQIISACKAYITNNGTASIWNQPQDVVEEKILSAIKLKQEYQLCFHKTKQKLKQNPNAKQFDFSEMYIFGKFETFHRRLAKIIDIFTTLKTYSVLQDSTIEGLEDMATKYQGIVATIKKKEYNFLDQRKMDFDQDYEEFCKQTNDLHNELRKFMDVTFAKIQNTNQALRMLKKF 575 HSP 2 Score: 160.229 bits (404), Expect = 1.842e-172 Identity = 79/177 (44.63%), Postives = 112/177 (63.28%), Query Frame = 3
Query: 1974 KLYDKCKEDPPTPRNLPPIAGKIAWARQLTRRIRDPMNYFEKRLATIRKKEHNKIIHQFNKCAQIILQFEMLYFDAWCEDVSAIKTGLQVSLLVRNKKTGQLMVNFDPSITQIIRETDCMLKMELDIPEPAKIIYQRQDQLKEYQHKLKVMIEERERVQELIPAMFLPMLKPHLNKV 2504
KLY K K DPP RN PPIAGKI WARQL RI+ PM F++ A + E II +N+ A+++L+FE+L+ AW + I GL+ SLLV+ TG+L VNFDP I + RET+CM +M L++ A ++Q++D+ K +K+M+ E +RV+ IPA ++ PHL KV
Sbjct: 605 KLYTKQKYDPPLARNQPPIAGKILWARQLFHRIQQPMQLFQQHPAVLSTAEAKPIIRSYNRMAKVLLEFEVLFHRAWLRQIEEIHVGLEASLLVKAPGTGELFVNFDPQILILFRETECMAQMGLEVSPLATSLFQKRDRYKRNFSNMKMMLAEYQRVKSKIPAAIEQLIVPHLAKV 781 The following BLAST results are available for this feature:
BLAST of TCONS_00016529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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