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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016520 ID=TCONS_00016520|Name=TCONS_00016520|organism=Clytia hemisphaerica|type=transcript|length=1556bp
AAATTACTATTAAGATTAAAGTTTGGTTTTCTTCTAATGTAACTGCTAGA
GGCACAGCACTAAAGGACGATCAGTTTAAACTGTTGATTTGATTTTCGAA
ACATGTTTTTGATTGATTATAAggtatttaactttttgtttatattttga
atCTTTAAAAATAGCATCTTTCCTAAAAATTGTTTAAACAAGTTATAAGG
ATTTCTACATCTTTTTCCAAGTTAAATATATATATTACCTTTCTAAGTCT
AGcatatgataaaaaaattatatataaaagTCCTATGAAATAGATAAAAG
CGTAACTAGTCTAGCATCTAGTATAAATGTTAAAAAAGTGTAAAACTCAA
ATATGTtgtaatgttttaaaaaatttctttctaaatttatgttttgttta
ttctttttattttattattattttattttaattcatTCAAAACTATTTCA
AGACAGGATAAGATCCAATAAAGTCTCTCTCAGTTTTGTCTCTCTTTTAT
CAGCCACACCATTCcgtttcttcaaaaaatcaatgtCATTTGTCAGTTCT
TTTCCAGAAaggtttttcagatattttccTTTTGTGAATCGTAAGGAAGA
CATTGTTTCTTTTGCTACTTCCTTCAAAGATTCTGTCTCATCAAAAGTCA
TATCAGAAGTGTTGTTTATAGCTTTATCAATCAAATCTAAGTTTTTGATT
TGGTAAGAGTATCTGGAATCATTCAAAATATCTTCGCTTTGTTTTGATAG
TGTTTCCATGCATTCAACAATGATCTCGTTTGTGACTAAAACATCCATCA
TTGCATCGTGTAAACCGTCTCCATCTCCAGTAACCATTTTTACAGGTTCA
AGTTTCTTCTTTTTGGGACTTGATACACTGTAGGAAACAACCTGCTTTTT
AGCACTTTCAATGCCTAAATGATTTGCTACATCAACCAAGCGATAGCGAT
CTAACTTTGGAAAGGCTGCAATGCTCATTTTATAAGTGTCAACAAGTCTT
ATATCAAGCCCTTTTAGTAGCTTTATCCATGGTATCCCTTGCTGCTGATT
TATACCAAGTTTCATGAAAGCATTAGTCAAAAACTCCCAGTCGAAGAGAA
CATTGTGTCCAAAAACATATTTGACATTgttgaaaaactttaaaatattc
tCTGCATGGAAATGAAAAGActttttctttaataaaatATCAGGACTTAT
CTTGTGAATCTTGAATCCATTAAGCTGGTTTTCTCTTGAAATTTGTGGAT
TAATATACTCATCAAAAacttcttgttttgtttttgagagaacTTTGATC
ATTGACAATTGCACGATTCTGTCTTTATTTTCATCCAACCCAGTTGTTTc
acaatcaaatacaatataaGGATAATGATCACCTTTATTTTCTGGAACAT
TTGAAGATTGTCCATttgaatcattttcaaattttacttcAAAAACAGCC
AAAACAGGAGTGGGAAGATTAGAAGTCGCATTTtcagccgccatctttgt
ttttgttatgatttgaaaTTACCGGAAAGTTGATAGTCCGTATAGTAATA
TTGCCG Run BLAST on NCBI transcript from alignment at sc0000241:79384..80939+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016520 ID=TCONS_00016520|Name=TCONS_00016520|organism=Clytia hemisphaerica|type=transcript|length=1556bp|location=Sequence derived from alignment at sc0000241:79384..80939+ (Clytia hemisphaerica)
AAATTACTATTAAGATTAAAGTTTGGTTTTCTTCTAATGTAACTGCTAGA
GGCACAGCACTAAAGGACGATCAGTTTAAACTGTTGATTTGATTTTCGAA
ACATGTTTTTGATTGATTATAAggtatttaactttttgtttatattttga
atCTTTAAAAATAGCATCTTTCCTAAAAATTGTTTAAACAAGTTATAAGG
ATTTCTACATCTTTTTCCAAGTTAAATATATATATTACCTTTCTAAGTCT
AGcatatgataaaaaaattatatataaaagTCCTATGAAATAGATAAAAG
CGTAACTAGTCTAGCATCTAGTATAAATGTTAAAAAAGTGTAAAACTCAA
ATATGTtgtaatgttttaaaaaatttctttctaaatttatgttttgttta
ttctttttattttattattattttattttaattcatTCAAAACTATTTCA
AGACAGGATAAGATCCAATAAAGTCTCTCTCAGTTTTGTCTCTCTTTTAT
CAGCCACACCATTCcgtttcttcaaaaaatcaatgtCATTTGTCAGTTCT
TTTCCAGAAaggtttttcagatattttccTTTTGTGAATCGTAAGGAAGA
CATTGTTTCTTTTGCTACTTCCTTCAAAGATTCTGTCTCATCAAAAGTCA
TATCAGAAGTGTTGTTTATAGCTTTATCAATCAAATCTAAGTTTTTGATT
TGGTAAGAGTATCTGGAATCATTCAAAATATCTTCGCTTTGTTTTGATAG
TGTTTCCATGCATTCAACAATGATCTCGTTTGTGACTAAAACATCCATCA
TTGCATCGTGTAAACCGTCTCCATCTCCAGTAACCATTTTTACAGGTTCA
AGTTTCTTCTTTTTGGGACTTGATACACTGTAGGAAACAACCTGCTTTTT
AGCACTTTCAATGCCTAAATGATTTGCTACATCAACCAAGCGATAGCGAT
CTAACTTTGGAAAGGCTGCAATGCTCATTTTATAAGTGTCAACAAGTCTT
ATATCAAGCCCTTTTAGTAGCTTTATCCATGGTATCCCTTGCTGCTGATT
TATACCAAGTTTCATGAAAGCATTAGTCAAAAACTCCCAGTCGAAGAGAA
CATTGTGTCCAAAAACATATTTGACATTgttgaaaaactttaaaatattc
tCTGCATGGAAATGAAAAGActttttctttaataaaatATCAGGACTTAT
CTTGTGAATCTTGAATCCATTAAGCTGGTTTTCTCTTGAAATTTGTGGAT
TAATATACTCATCAAAAacttcttgttttgtttttgagagaacTTTGATC
ATTGACAATTGCACGATTCTGTCTTTATTTTCATCCAACCCAGTTGTTTc
acaatcaaatacaatataaGGATAATGATCACCTTTATTTTCTGGAACAT
TTGAAGATTGTCCATttgaatcattttcaaattttacttcAAAAACAGCC
AAAACAGGAGTGGGAAGATTAGAAGTCGCATTTtcagccgccatctttgt
ttttgttatgatttgaaaTTACCGGAAAGTTGATAGTCCGTATAGTAATA
TTGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016520-exon-sc0000241-1491911889:79384..80939 | TCONS_00016520-exon-sc0000241-1491911889:79384..80939 | Clytia hemisphaerica | exon |
| TCONS_00016520-exon-sc0000241-1510915933:79384..80939 | TCONS_00016520-exon-sc0000241-1510915933:79384..80939 | Clytia hemisphaerica | exon |
| TCONS_00016520-exon-sc0000241-1575043694:79384..80939 | TCONS_00016520-exon-sc0000241-1575043694:79384..80939 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000241 | supercontig | sc0000241:79384..80939 + |
Blast
The following BLAST results are available for this feature:
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