TCONS_00016504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016504
Unique NameTCONS_00016504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016504 ID=TCONS_00016504|Name=TCONS_00016504|organism=Clytia hemisphaerica|type=transcript|length=437bp
NNCCGAGCCACGAGAAGTACACAATGAAGAAGCACATTCTCGTTTGCAAC
GACCACAAGTCAGATCCCGGCAACCAAGAAGTACTGGAACAATTCAAATC
GCGAAGCATTGTCAAACGACCCAACATCccagaattttcaaaaacgatAT
CGAACTACTACACGTTTCAATCTTGAAATGACGACTCAGCTTCAGGTATA
TATCAGCTTCAACAAATCATCAACTCAAAATCTTACCTGATCTTCTACGA
TTCTGGGTGCAGCGATTTTGTTGTACGTGACCACGCGATCGATCAATTGG
AATCGAGAGCCCGACTTAAAGAAAAGGGACCTATCAAGCTTGGTGGTGTT
GGCGACGTATCAACACTGTCATCCAAGGGCATCTACAGTATCGATCTACC
AACCTTTGACGGCTCAAATGTGACACTCACCGGTGTC
Run BLAST on NCBI

transcript from alignment at sc0000240:282372..282808

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016504 ID=TCONS_00016504|Name=TCONS_00016504|organism=Clytia hemisphaerica|type=transcript|length=437bp|location=Sequence derived from alignment at sc0000240:282372..282808 (Clytia hemisphaerica)
GACACCGGTGAGTGTCACATTTGAGCCGTCAAAGGTTGGTAGATCGATAC
TGTAGATGCCCTTGGATGACAGTGTTGATACGTCGCCAACACCACCAAGC
TTGATAGGTCCCTTTTCTTTAAGTCGGGCTCTCGATTCCAATTGATCGAT
CGCGTGGTCACGTACAACAAAATCGCTGCACCCAGAATCGTAGAAGATCA
GGTAAGATTTTGAGTTGATGATTTGTTGAAGCTGATATATACCTGAAGCT
GAGTCGTCATTTCAAGATTGAAACGTGTAGTAGTTCGATatcgtttttga
aaattctggGATGTTGGGTCGTTTGACAATGCTTCGCGATTTGAATTGTT
CCAGTACTTCTTGGTTGCCGGGATCTGACTTGTGGTCGTTGCAAACGAGA
ATGTGCTTCTTCATTGTGTACTTCTCGTGGCTCGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009225XLOC_009225Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016504-exon-sc0000240-1491911889:282372..282808TCONS_00016504-exon-sc0000240-1491911889:282372..282808Clytia hemisphaericaexon
TCONS_00016504-exon-sc0000240-1510915933:282372..282808TCONS_00016504-exon-sc0000240-1510915933:282372..282808Clytia hemisphaericaexon
TCONS_00016504-exon-sc0000240-1575043694:282372..282808TCONS_00016504-exon-sc0000240-1575043694:282372..282808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000240supercontigsc0000240:282372..282808 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.45703	2.31482	1.46702	0.437879	1.58818	0.497457	0.886704	1.77611	0.262249	0.560428	0	0.782692	0.379382	0	0	0.0948208	0	0	0.165411	0	0.150447	0	0.356825	0.843272	1.00239	0.447305	0	0	0.673557	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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