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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016499 ID=TCONS_00016499|Name=TCONS_00016499|organism=Clytia hemisphaerica|type=transcript|length=769bp
ATTCCACAAGCTCCTTTTATGGAAAGGGAAAGGCAAAATCGTACCAAACT
ATGAAAGACAACGTATTTTACAATCTACCTTTTATGTCACTTGGATCGTC
TTTGTCTCTGGATACCGATTCGTTTAACTTGTTAAGCCAATTTGTTTGTG
ATATGTATGGATATCCAAACACCTCGGACGTGAATAATGTCCGTTACTCT
ATTTTCAAAAGTGGGAAGTTTTCTGAGGAGTCACTTCCACCTACCCTTGA
TTCGTTAATACTACACGTGTTGCGTTCAAACTACCAGGCATATATTTGGA
AACACGCTACGCTTCAAAACCTGCACATGCCAATCCCAACTGAACATGGA
TGGGTCATGATTGAAACAAAGCTGCGAATTCATTGGATGTCAATGCCAAT
CGCCCCCGATAGTGTGCTATCTTTCGCTAACTGTGGTTGCAAGACAGGCT
GCATCACAAATCGTTGCTCCTGCAAAAAGGCAGGTCTTAAATGCACTGAC
TTGTGTAAATGTTTGGACAACTGTGAAAATCGTGACAAACTTGAGACGGC
TCCAAACGACATTGATGACATTGACTACGATTTAGCAATGCAAGGGGACG
TCCCAGATAGTGACAGCGAAAACGAATCTGACGATGAGGAATCTAATGAT
GAGGAATCTGATGACCAGGACTCCATTGAATCAGAATGGGAAAGCTCAAC
TGAGGTATTCTCGAGttcctaataaacgtacattaAGCGAATAAACGCAC
AGGGTCAAAAATAGAGGCa Run BLAST on NCBI protein sequence of TCONS_00016499-protein >TCONS_00016499-protein ID=TCONS_00016499-protein|Name=TCONS_00016499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
STSSFYGKGKAKSYQTMKDNVFYNLPFMSLGSSLSLDTDSFNLLSQFVCD
MYGYPNTSDVNNVRYSIFKSGKFSEESLPPTLDSLILHVLRSNYQAYIWK
HATLQNLHMPIPTEHGWVMIETKLRIHWMSMPIAPDSVLSFANCGCKTGC
ITNRCSCKKAGLKCTDLCKCLDNCENRDKLETAPNDIDDIDYDLAMQGDV
PDSDSENESDDEESNDEESDDQDSIESEWESSTEVFSSS Run BLAST on NCBI transcript from alignment at sc0000240:262986..263754 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016499 ID=TCONS_00016499|Name=TCONS_00016499|organism=Clytia hemisphaerica|type=transcript|length=769bp|location=Sequence derived from alignment at sc0000240:262986..263754 (Clytia hemisphaerica)
tGCCTCTATTTTTGACCCTGTGCGTTTATTCGCTtaatgtacgtttatta
ggaaCTCGAGAATACCTCAGTTGAGCTTTCCCATTCTGATTCAATGGAGT
CCTGGTCATCAGATTCCTCATCATTAGATTCCTCATCGTCAGATTCGTTT
TCGCTGTCACTATCTGGGACGTCCCCTTGCATTGCTAAATCGTAGTCAAT
GTCATCAATGTCGTTTGGAGCCGTCTCAAGTTTGTCACGATTTTCACAGT
TGTCCAAACATTTACACAAGTCAGTGCATTTAAGACCTGCCTTTTTGCAG
GAGCAACGATTTGTGATGCAGCCTGTCTTGCAACCACAGTTAGCGAAAGA
TAGCACACTATCGGGGGCGATTGGCATTGACATCCAATGAATTCGCAGCT
TTGTTTCAATCATGACCCATCCATGTTCAGTTGGGATTGGCATGTGCAGG
TTTTGAAGCGTAGCGTGTTTCCAAATATATGCCTGGTAGTTTGAACGCAA
CACGTGTAGTATTAACGAATCAAGGGTAGGTGGAAGTGACTCCTCAGAAA
ACTTCCCACTTTTGAAAATAGAGTAACGGACATTATTCACGTCCGAGGTG
TTTGGATATCCATACATATCACAAACAAATTGGCTTAACAAGTTAAACGA
ATCGGTATCCAGAGACAAAGACGATCCAAGTGACATAAAAGGTAGATTGT
AAAATACGTTGTCTTTCATAGTTTGGTACGATTTTGCCTTTCCCTTTCCA
TAAAAGGAGCTTGTGGAAT Coding sequence (CDS) from alignment at sc0000240:262986..263754 >TCONS_00016499 ID=TCONS_00016499|Name=TCONS_00016499|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0000240:262986..263754 (Clytia hemisphaerica)
ttaggaaCTCGAGAATACCTCAGTTGAGCTTTCCCATTCTGATTCAATGG
AGTCCTGGTCATCAGATTCCTCATCATTAGATTCCTCATCGTCAGATTCG
TTTTCGCTGTCACTATCTGGGACGTCCCCTTGCATTGCTAAATCGTAGTC
AATGTCATCAATGTCGTTTGGAGCCGTCTCAAGTTTGTCACGATTTTCAC
AGTTGTCCAAACATTTACACAAGTCAGTGCATTTAAGACCTGCCTTTTTG
CAGGAGCAACGATTTGTGATGCAGCCTGTCTTGCAACCACAGTTAGCGAA
AGATAGCACACTATCGGGGGCGATTGGCATTGACATCCAATGAATTCGCA
GCTTTGTTTCAATCATGACCCATCCATGTTCAGTTGGGATTGGCATGTGC
AGGTTTTGAAGCGTAGCGTGTTTCCAAATATATGCCTGGTAGTTTGAACG
CAACACGTGTAGTATTAACGAATCAAGGGTAGGTGGAAGTGACTCCTCAG
AAAACTTCCCACTTTTGAAAATAGAGTAACGGACATTATTCACGTCCGAG
GTGTTTGGATATCCATACATATCACAAACAAATTGGCTTAACAAGTTAAA
CGAATCGGTATCCAGAGACAAAGACGATCCAAGTGACATAAAAGGTAGAT
TGTAAAATACGTTGTCTTTCATAGTTTGGTACGATTTTGCCTTTCCCTTT
CCATAAAAGGAGCTTGTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016499-exon-sc0000240-1491911889:262986..263754 | TCONS_00016499-exon-sc0000240-1491911889:262986..263754 | Clytia hemisphaerica | exon |
| TCONS_00016499-exon-sc0000240-1510915933:262986..263754 | TCONS_00016499-exon-sc0000240-1510915933:262986..263754 | Clytia hemisphaerica | exon |
| TCONS_00016499-exon-sc0000240-1575043694:262986..263754 | TCONS_00016499-exon-sc0000240-1575043694:262986..263754 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000240 | supercontig | sc0000240:262986..263754 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR033467 | Tesmin/TSO1-like_CXC |
Blast
The following BLAST results are available for this feature:
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