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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016484 ID=TCONS_00016484|Name=TCONS_00016484|organism=Clytia hemisphaerica|type=transcript|length=1454bp
ATCAGCTCTGAGCAGATCAATAGTTTCAATAAAATATCACTTAATGGATT
TATCCCAATGGCATTTAATGGTTCTTTTGATCGAATGTAGTTTGGTCATA
TTCTTGAACATCATCCTAATCGTCTTCATCCTCCTTAAGCGTCAATTGAG
ATGTCAAATCTGTAGTCTTTTCCTGGTCAACCTCTTCTTTGCTCACACCC
TTGAAGGATTAGTTGGAGTTGCCAGATCATCCTTCCTATATTCACCTAAG
AAGAAAGATGCAGAGAAAGTCAATCTATCAGTGAATTTGTTCACAACAGC
CGTCATATTTTCGTATTTAACCTATATCCCTGTGACTCTTGATAGGTTCA
TAGCCATCAAGTACCCTTTCCGATATCAagcaataaatttcaaaaaagtt
gccATCATCAACCTCACAATTTGGTGCGTCACAATTTGTTTCGGTGCCGT
AGCTTTAACCACTGGATTGAGTTCCCGTATCGGAGATGCTATAACCGTTT
GCTTCACCGTTTTTATGTACTTATTAACTATTACTACGAATGTGAAAATT
TATGGTGAAGTTAAAAGACATACAGAAAATCTAAAGAGGAATTGTATTGA
AGATGGTGTTGGGAGTAAGGATAACAAAGGGCTTAACATTCCACATGGTG
AGTTGACTTTGGAATCTACATCTGGTAACAAAACTATATCCCCGAAAAGG
AAATTTATACATGATCCGAAATCTACAGTTGACCAGCTCTTATCTGTTAG
CAATACCGCAAATGATACAGCTCAGTCAAGTCAAAACACATTTTCAAAAC
TTGCTCTGGAATCTCCGAACGAGCTTACAGTACCAGTTCTTGCAACAATA
ACGCCTATCTGCGAATATTCGGATAACAAGATaactaaaaaacaaaatga
aaactgTAACAGTAAGCTAAAACCCTCAGATGTCTCCACAGAGCCTTCTG
AGAAACTCATCATTCAAGCTCTAACAACAAAAACCAGTAATAGTGCAACA
AAACATCAAGATAACGCTCTAGAACTTCGAAATCAGCAGTTATTCACAAC
GCGCCCAAATGAATTGATCATTCAAAAAGCTCATTCATCAAGTGTATGTG
AAGCAAgacctcaaaatatttcttcacGTCCTGTATTGAGTAAAAAGAAA
ACTCGTCAATATCTTGACGCTCGTTGTATACGTTCTGCTAAAATGTGTTC
GGTGATCGTCATAACATTTGCTTGTTGTTGGACACCACATGCCTTGCATG
ATCTATTGAAAATCACAAACGCAGCGCCCAGTATCGTCTACAGTGATAGT
ATATTGGCGAGAACAACTTTGGTTGTCGCGTTTTTGAATGGGATCATTGA
TCCTATTTTATATGTCACAATGAACAAGAGCCTTAAGAAACAAATCGGTA
AATTCAAGAGacgaatactaaatactgtttCACCCAGTTATAATTAGAAT
TGTG Run BLAST on NCBI protein sequence of TCONS_00016484-protein >TCONS_00016484-protein ID=TCONS_00016484-protein|Name=TCONS_00016484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=481bp
SALSRSIVSIKYHLMDLSQWHLMVLLIECSLVIFLNIILIVFILLKRQLR
CQICSLFLVNLFFAHTLEGLVGVARSSFLYSPKKKDAEKVNLSVNLFTTA
VIFSYLTYIPVTLDRFIAIKYPFRYQAINFKKVAIINLTIWCVTICFGAV
ALTTGLSSRIGDAITVCFTVFMYLLTITTNVKIYGEVKRHTENLKRNCIE
DGVGSKDNKGLNIPHGELTLESTSGNKTISPKRKFIHDPKSTVDQLLSVS
NTANDTAQSSQNTFSKLALESPNELTVPVLATITPICEYSDNKITKKQNE
NCNSKLKPSDVSTEPSEKLIIQALTTKTSNSATKHQDNALELRNQQLFTT
RPNELIIQKAHSSSVCEARPQNISSRPVLSKKKTRQYLDARCIRSAKMCS
VIVITFACCWTPHALHDLLKITNAAPSIVYSDSILARTTLVVAFLNGIID
PILYVTMNKSLKKQIGKFKRRILNTVSPSYN Run BLAST on NCBI transcript from alignment at sc0000240:30329..32049- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016484 ID=TCONS_00016484|Name=TCONS_00016484|organism=Clytia hemisphaerica|type=transcript|length=1721bp|location=Sequence derived from alignment at sc0000240:30329..32049- (Clytia hemisphaerica)
ATCAGCTCTGAGCAGATCAATAGTTTCAATAAAATATCACTTAATGGATT
TATCCCAATGGCATTTAATGGTTCTTTTGATCGAATGTAGTTTGGTCATA
TTCTTGAACATCATCCTAATCGTCTTCATCCTCCTTAAGCGTCAATTGAG
ATGTCAAATCTGTAGTCTTTTCCTGGTCAACCTCTTCTTTGCTCACACCC
TTGAAGGATTAGTTGGAGTTGCCAGATCATCCTTCCTATATTCACCTAAG
AAGAAAGATGCAGAGAAAGTCAATCTATCAGTGAATTTGTTCACAACAGC
CGTCATATTTTCGTATTTAACCTATATCCCTGTGACTCTTGATAGGTAAG
TTATGTATGTCATGTCATTCGAAAAAGTATTTGAAATTGAGAAGCTCTTT
TTTTCCTCTTCTTTTTAGGCAATTTTTAGCAAAGACTTTTGCATCCCTGC
TTCACATTCCTGGAGCACGAGTTATTTCGAGGAACCATCCCTTTAATATC
AACAACAAACATAGCATATCAAAAAAAGGCATAGCGCCATATTTGAATCG
ATTTTGCATTGTAGCATCTAGATTTTAAGTATTTTTTTTTACTTCCTTTA
TTTGGATTCTAGGTTCATAGCCATCAAGTACCCTTTCCGATATCAAGCAA
TAAATTTCAAAAAAGTTGCCATCATCAACCTCACAATTTGGTGCGTCACA
ATTTGTTTCGGTGCCGTAGCTTTAACCACTGGATTGAGTTCCCGTATCGG
AGATGCTATAACCGTTTGCTTCACCGTTTTTATGTACTTATTAACTATTA
CTACGAATGTGAAAATTTATGGTGAAGTTAAAAGACATACAGAAAATCTA
AAGAGGAATTGTATTGAAGATGGTGTTGGGAGTAAGGATAACAAAGGGCT
TAACATTCCACATGGTGAGTTGACTTTGGAATCTACATCTGGTAACAAAA
CTATATCCCCGAAAAGGAAATTTATACATGATCCGAAATCTACAGTTGAC
CAGCTCTTATCTGTTAGCAATACCGCAAATGATACAGCTCAGTCAAGTCA
AAACACATTTTCAAAACTTGCTCTGGAATCTCCGAACGAGCTTACAGTAC
CAGTTCTTGCAACAATAACGCCTATCTGCGAATATTCGGATAACAAGATA
ACTAAAAAACAAAATGAAAACTGTAACAGTAAGCTAAAACCCTCAGATGT
CTCCACAGAGCCTTCTGAGAAACTCATCATTCAAGCTCTAACAACAAAAA
CCAGTAATAGTGCAACAAAACATCAAGATAACGCTCTAGAACTTCGAAAT
CAGCAGTTATTCACAACGCGCCCAAATGAATTGATCATTCAAAAAGCTCA
TTCATCAAGTGTATGTGAAGCAAGACCTCAAAATATTTCTTCACGTCCTG
TATTGAGTAAAAAGAAAACTCGTCAATATCTTGACGCTCGTTGTATACGT
TCTGCTAAAATGTGTTCGGTGATCGTCATAACATTTGCTTGTTGTTGGAC
ACCACATGCCTTGCATGATCTATTGAAAATCACAAACGCAGCGCCCAGTA
TCGTCTACAGTGATAGTATATTGGCGAGAACAACTTTGGTTGTCGCGTTT
TTGAATGGGATCATTGATCCTATTTTATATGTCACAATGAACAAGAGCCT
TAAGAAACAAATCGGTAAATTCAAGAGACGAATACTAAATACTGTTTCAC
CCAGTTATAATTAGAATTGTG Coding sequence (CDS) from alignment at sc0000240:30329..32049- >TCONS_00016484 ID=TCONS_00016484|Name=TCONS_00016484|organism=Clytia hemisphaerica|type=CDS|length=2892bp|location=Sequence derived from alignment at sc0000240:30329..32049- (Clytia hemisphaerica)
GTTCATAGCCATCAAGTACCCTTTCCGATATCAAGCAATAAATTTCAAAA
AAGTTGCCATCATCAACCTCACAATTTGGTGCGTCACAATTTGTTTCGGT
GCCGTAGCTTTAACCACTGGATTGAGTTCCCGTATCGGAGATGCTATAAC
CGTTTGCTTCACCGTTTTTATGTACTTATTAACTATTACTACGAATGTGA
AAATTTATGGTGAAGTTAAAAGACATACAGAAAATCTAAAGAGGAATTGT
ATTGAAGATGGTGTTGGGAGTAAGGATAACAAAGGGCTTAACATTCCACA
TGGTGAGTTGACTTTGGAATCTACATCTGGTAACAAAACTATATCCCCGA
AAAGGAAATTTATACATGATCCGAAATCTACAGTTGACCAGCTCTTATCT
GTTAGCAATACCGCAAATGATACAGCTCAGTCAAGTCAAAACACATTTTC
AAAACTTGCTCTGGAATCTCCGAACGAGCTTACAGTACCAGTTCTTGCAA
CAATAACGCCTATCTGCGAATATTCGGATAACAAGATAACTAAAAAACAA
AATGAAAACTGTAACAGTAAGCTAAAACCCTCAGATGTCTCCACAGAGCC
TTCTGAGAAACTCATCATTCAAGCTCTAACAACAAAAACCAGTAATAGTG
CAACAAAACATCAAGATAACGCTCTAGAACTTCGAAATCAGCAGTTATTC
ACAACGCGCCCAAATGAATTGATCATTCAAAAAGCTCATTCATCAAGTGT
ATGTGAAGCAAGACCTCAAAATATTTCTTCACGTCCTGTATTGAGTAAAA
AGAAAACTCGTCAATATCTTGACGCTCGTTGTATACGTTCTGCTAAAATG
TGTTCGGTGATCGTCATAACATTTGCTTGTTGTTGGACACCACATGCCTT
GCATGATCTATTGAAAATCACAAACGCAGCGCCCAGTATCGTCTACAGTG
ATAGTATATTGGCGAGAACAACTTTGGTTGTCGCGTTTTTGAATGGGATC
ATTGATCCTATTTTATATGTCACAATGAACAAGAGCCTTAAGAAACAAAT
CGGTAAATTCAAGAGACGAATACTAAATACTGTTTCACCCAGTTATAATT
AGTCAGCTCTGAGCAGATCAATAGTTTCAATAAAATATCACTTAATGGAT
TTATCCCAATGGCATTTAATGGTTCTTTTGATCGAATGTAGTTTGGTCAT
ATTCTTGAACATCATCCTAATCGTCTTCATCCTCCTTAAGCGTCAATTGA
GATGTCAAATCTGTAGTCTTTTCCTGGTCAACCTCTTCTTTGCTCACACC
CTTGAAGGATTAGTTGGAGTTGCCAGATCATCCTTCCTATATTCACCTAA
GAAGAAAGATGCAGAGAAAGTCAATCTATCAGTGAATTTGTTCACAACAG
CCGTCATATTTTCGTATTTAACCTATATCCCTGTGACTCTTGATAGGTTC
ATAGCCATCAAGTACCCTTTCCGATATCAAGCAATAAATTTCAAAAAAGT
TGCCATCATCAACCTCACAATTTGGTGCGTCACAATTTGTTTCGGTGCCG
TAGCTTTAACCACTGGATTGAGTTCCCGTATCGGAGATGCTATAACCGTT
TGCTTCACCGTTTTTATGTACTTATTAACTATTACTACGAATGTGAAAAT
TTATGGTGAAGTTAAAAGACATACAGAAAATCTAAAGAGGAATTGTATTG
AAGATGGTGTTGGGAGTAAGGATAACAAAGGGCTTAACATTCCACATGGT
GAGTTGACTTTGGAATCTACATCTGGTAACAAAACTATATCCCCGAAAAG
GAAATTTATACATGATCCGAAATCTACAGTTGACCAGCTCTTATCTGTTA
GCAATACCGCAAATGATACAGCTCAGTCAAGTCAAAACACATTTTCAAAA
CTTGCTCTGGAATCTCCGAACGAGCTTACAGTACCAGTTCTTGCAACAAT
AACGCCTATCTGCGAATATTCGGATAACAAGATAACTAAAAAACAAAATG
AAAACTGTAACAGTAAGCTAAAACCCTCAGATGTCTCCACAGAGCCTTCT
GAGAAACTCATCATTCAAGCTCTAACAACAAAAACCAGTAATAGTGCAAC
AAAACATCAAGATAACGCTCTAGAACTTCGAAATCAGCAGTTATTCACAA
CGCGCCCAAATGAATTGATCATTCAAAAAGCTCATTCATCAAGTGTATGT
GAAGCAAGACCTCAAAATATTTCTTCACGTCCTGTATTGAGTAAAAAGAA
AACTCGTCAATATCTTGACGCTCGTTGTATACGTTCTGCTAAAATGTGTT
CGGTGATCGTCATAACATTTGCTTGTTGTTGGACACCACATGCCTTGCAT
GATCTATTGAAAATCACAAACGCAGCGCCCAGTATCGTCTACAGTGATAG
TATATTGGCGAGAACAACTTTGGTTGTCGCGTTTTTGAATGGGATCATTG
ATCCTATTTTATATGTCACAATGAACAAGAGCCTTAAGAAACAAATCGGT
AAATTCAAGAGACGAATACTAAATACTGTTTCACCCAGTTATAATTAGTC
AGCTCTGAGCAGATCAATAGTTTCAATAAAATATCACTTAATGGATTTAT
CCCAATGGCATTTAATGGTTCTTTTGATCGAATGTAGTTTGGTCATATTC
TTGAACATCATCCTAATCGTCTTCATCCTCCTTAAGCGTCAATTGAGATG
TCAAATCTGTAGTCTTTTCCTGGTCAACCTCTTCTTTGCTCACACCCTTG
AAGGATTAGTTGGAGTTGCCAGATCATCCTTCCTATATTCACCTAAGAAG
AAAGATGCAGAGAAAGTCAATCTATCAGTGAATTTGTTCACAACAGCCGT
CATATTTTCGTATTTAACCTATATCCCTGTGACTCTTGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016484-exon-sc0000240-1575043694:31705..32049 | TCONS_00016484-exon-sc0000240-1575043694:31705..32049 | Clytia hemisphaerica | exon |
| TCONS_00016484-exon-sc0000240-1575043694:30329..31437 | TCONS_00016484-exon-sc0000240-1575043694:30329..31437 | Clytia hemisphaerica | exon |
| TCONS_00016484-exon-sc0000240-1510915933:31705..32049 | TCONS_00016484-exon-sc0000240-1510915933:31705..32049 | Clytia hemisphaerica | exon |
| TCONS_00016484-exon-sc0000240-1510915933:30329..31437 | TCONS_00016484-exon-sc0000240-1510915933:30329..31437 | Clytia hemisphaerica | exon |
| TCONS_00016484-exon-sc0000240-1491911889:31705..32049 | TCONS_00016484-exon-sc0000240-1491911889:31705..32049 | Clytia hemisphaerica | exon |
| TCONS_00016484-exon-sc0000240-1491911889:30329..31437 | TCONS_00016484-exon-sc0000240-1491911889:30329..31437 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000240 | supercontig | sc0000240:30329..32049 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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