TCONS_00016469 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016469
Unique Name	TCONS_00016469
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2297

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000240:169725..175043+

transcript sequence

>TCONS_00016469 ID=TCONS_00016469|Name=TCONS_00016469|organism=Clytia hemisphaerica|type=transcript|length=2297bp
tgataaaactaaaaatgttacgTCTATGATGTCCTCTTCATCCTTGGAAA
GGGGAAAGACCACACGTGATTGTATGGACGACAAGGATGATTACTTAGAC
GTATTTTACGATGCGACTGAAACTCTGTCCGAATACGAATTCGAAGCGTC
CGTCCGAATCGAAGATGAATCGGAGGAATCGTCCAATGAGGAAGCACCGA
TGACGGCAACGACCGTTGACCACACTGAAAGTAATGGTGTGTTGAGTGTC
CCACAGCAAAATGATGTCAAATTGTCGCCCAGAAGTCAGAAAAGGCTTCC
CAAATATAGGAAGCAACTTCCAGCCACCATGGCATCACGGAACGATTTCA
GCGTGTGGAACGTGTTGAAACAAGCTGTGGGAAAAGATTTGTCACGCATC
ACAATGCCAGTCATCTTCAATGAACCTCTCTCCTTCTTGCAACGAATAAG
TGAATATATGGATTATGTCGATATCCTTCATAAAGCTACTGAAACTGAAG
ACTCCCTTGAACGTTTATTGTTGGTATCAGTGTTCATGATCAGTTGCAAC
GCTTCCACCGAATCACGTATTGGAAAACCTTTCAATCCTCTCTTAGGTGA
AACTTTCGAACTTATCAGGGAAGACATGGACTTCAAGATCTGTGCAGAAC
AAGTGAGTCACCACCCACCTGTCAGTGCTTTGTATGCCGAAAGTGAATCC
GGCTTCGAATTGACCATGACAATGCAACCGGAACTCAAATTCTGGGGAAA
AGATATTGAAGTCAAACCCAAAGGTGGTGTCACCATCAAAATACCTAAAT
ACAACGACATTTACACATTTGATTACATCAGCAGTGGTGTCCACAACATC
ATCGTTGGACAACTCTGGATCGAATTGTACGGTTCATGCACGATACGCAA
CCAGACAACGGGAGAAAGCGCAACCATCACCTTCAAACCTGCCGGTTGGT
TCAGCAAGGAGATGAACCAAGTCGAAGGATACATCTTCAACCAAAAgaaa
gaaaaagtgaCATATTTGCGTTCGGATTGGACGAAGTATGTTTGTTCATG
CCCGATCAAACACGAATCAGCATTACAAAACGCTCTGAAAGGACCACTGA
GTGAAGATGATATCGAGTTATGTAAAATACCACCTGAAGCAACCATCAAT
TGGAAAGTCCGGCCCAAACCCTCTATCACTTCTGAGATGTACATgatgac
agaatttgccatgGGATTGAACGAGTTGTTAGATGAACACAAAGAAGTGG
TTGCACCAACAGACTGCAGATATCGTCCTGACTTGCGTTGCTTGGAAAAC
GGTGACATGGACGCTGCTGCACAAGAAAAGATTCGTCTAGAAGAAGCTCA
ACGAGCACGACGCAAAGAACGCAATGCTACTGGAGGTACTTGGTCTCCAA
GGTGGTTTTCATACGATGTCGTCGACCACTCTGATTCCAAAGAATGGATG
TACACCAACAAGTATTTCGATAGAGACTTTTCTACATGCCCACAAATCTA
TGAATAATtactttccatttttttaacaaaaatttNTTCTACTTGTCCAC
AAATCTATGAATAAttactttcctttttttaaacaaaaattcctTCATTT
TTAAACCAAAAGCTATCCAAAAGTACCACATTTTCATTCACCATTTCACT
TGCACGTAATTTTTCTTTatctgtttcttttctttactcGTTTTCTAGTC
TTAGATGTATCTTAGTGGGGTGCCTTCAAATGTTTTTAAGAATTATTCAT
TCCTGGGTTTATTCAAGATTTTGGTGATTATTTAAGACAGTGATGTGTTA
TATAGGAGAGCGTCATCTTATCGAATTGACTTGTTCGAGATTGAGGTTAA
TTTATTTATGGTAATAACACAAACCTCACTGTAGGCCAAATTATCCAAAT
CCTGCATGTTGGGCTGTTGTAGGTTTATCGCTCAAATTTGCCATTTCTCG
ACCCTTTGTTACTTTGAGTATTTTGTAACAATTAGAATAATGGAATTTTG
ATATTTATGtagtaataaaatttaaaatgcatttttcccaatttttgctt
tttatttcttagcatattttcttcatttctaataataataattgaagatt
ttaattttttttactgtgAATCAAAATAAGGATCAAGCAATCCTTTTGGC
TCAACAAACTGCATGGTACTGTTTGTGGTAGAGCACATGACATTTACACA
TTTTATTAGTTATTTTTTGTAtgtaaaacttaattttgataCTTAATtgc
ataaacaaataaaaaaagatttttatgaattaagaaaagtgaaaact

Run BLAST on NCBI

transcript from alignment at sc0000240:169725..175043+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016469 ID=TCONS_00016469|Name=TCONS_00016469|organism=Clytia hemisphaerica|type=transcript|length=5319bp|location=Sequence derived from alignment at sc0000240:169725..175043+ (Clytia hemisphaerica)
tgataaaactaaaaatgttacgTCTATGATGTCCTCTTCATCCTTGGAAA
GGGGAAAGGCTAGTTTGCTTTCCAAAGTTATGAACAAAAAACCGgccaaa
acatttcaaaaacgTCATTTTCGAGCAAtacaatttttcctctttctttt
ttacatgaaaaagagtttgtttttgttgtgtTGCAAATTGTACTTTCAAA
AGTGCGCCTTTACGaatataatgttttttttcgaaatagaaCCTTAGCTC
AAGCTTCACATTTAGGAAGGACAACTAAGTCTCACTTTTTACTGTTAAAA
gtctataaaaatataatttagatACAGAAGAACACTGAATACAACCGAGC
TATTCAATCAAGCTAAAGATGGCACATTACCTGCCACAGGTTTCGTAATA
AGGCCTCATAATAATGCACTTCAGGTCCTTTAATGATCTTGAATCTCCAC
AAGTTTGACCTATTTCCACATTTCCTTGCAGACCACACGTGATTGTATGG
ACGACAAGGATGATTACTTAGACGTATTTTACGATGCGACTGAAACTCTG
TCCGAATACGAATTCGAAGCGTCCGTCCGAATCGAAGATGAATCGGAGGA
ATCGTCCAATGAGGAAGCACCGATGACGGCAACGACCGTTGACCACACTG
AAAGTAATGGTGTGTTGAGTGTCCCACAGCAAAATGATGTCAAATTGTCG
CCCAGAAGTCAGAAAAGGCTTCCCAAATATAGGTAGGTTGTTGACTTTCA
TCTATAAAGAAATATTTCCTGGTTGAAAATgttgaccaatttttccatCT
GCATTACTGCTGTATGAAGAAAACGGTACTGCTCATTATTTTTTCGTTTG
AAAGATCTGACGgttcaaatcaaaagaaattcggAGCTTTTGCATCGCGG
ACTGCACAGGACCGTAAAATATATACCCAGAAGAAAATCTTGGCTAGCAA
GCAAATTTGGAATCTTTTAAGTCATTGCTATAGCCTCAACTATCATTTTC
GGCCTCTGCCATCTATGAGTCTAAAACTGTGTATTATAGTCCCGACAAAG
ATGGACTTAGAGATAGAGAGATTTGAGTCCCGAATAAGTTTATCGAGAAA
GCTGTGATTATACTTAAGTCATTGGTAAAGACATGTTTATATATCATTCA
TTCCAACTAATTTACAGGAAGCAACTTCCAGCCACCATGGCATCACGGAA
CGATTTCAGCGTGTGGAACGTGTTGAAACAAGCTGTGGGAAAAGATTTGT
CACGCATCACAATGCCAGTCATCTTCAATGAACCTCTCTCCTTCTTGCAA
CGAATAAGTGAATATATGGATTATGTCGATATCCTTCATAAAGCTACTGA
AACTGAAGACTCCCTTGAACGTTTATTGGTACGTAAACACTTCCCtcttt
aattgtttttagttctTGAGGCCCAAGTCATCCGCCTAGGTAGTCTAGCA
TTCACACACTGTAAAGAGATAATAACATTATCATGTAACACACATATCTC
TGTAACAACGATTTTTTTTAAACGACCCCAGTCTATCTAATAGGCTTACA
ATCTCCTGTTAGTTCTAGCGCCAAAACTAAGCCCGGTCCAGACCTTCAAT
TCACCACTtcaggcttcactttttcttgccctCTGGTGTGGCCACGTCCT
TAGTATAGCTTTTttgtctatgagtgtggtcgctcgtcTCGCTTATTTAG
GCAAATAAAtcatttacttacttactacttacttacttacttcaaGCCTT
TCGGGCTTCTATTTCATTGGGTTAGAcacaaaaatcaacaaatttgACAA
TCTTGATTCCCCATGATTCATTAAAACCGTAAAAAAATAGATTCCTTTTT
CTTACCCAGTATGCTAACTCGATACTTCATCCTCCCTCTCTTCACACAGT
TGGTATCAGTGTTCATGATCAGTTGCAACGCTTCCACCGAATCACGTATT
GGAAAACCTTTCAATCCTCTCTTAGGTGAAACTTTCGAACTTATCAGGTA
AGAAAGTCAGAAATGAGTTTTATTTTGTACAATAgcctaaaaatgtaaat
aatcTTATACAATGTGACTTTCCACTGACTCGCTGGAgatcaaaataata
aaagtttCGAATATCATCAAGATTGGAAAAGCTCCTTTTTTATAGTTGGT
GATTTTGCAATGGACTAAATTCTCGCTGGGGCCTGCGGAAAGGATTCCCC
AATTTATCAGTGATATGGTAGCCTACGAagatttcataattttcatgaCA
ACATTTTTAGGGAAGACATGGACTTCAAGATCTGTGCAGAACAAGTGAGT
CACCACCCACCTGTCAGTGCTTTGTATGCCGAAAGTGAATCCGGCTTCGA
ATTGACCATGACAATGCAACCGGAACTCAAATTCTGGGGAAAAGATATTG
AAGTCAAACCCAAAGGTGGTGTCACCATCAAAATACCTAAGTACGTACTA
TTTACACTTTGTTGCTGATTTGTGTATCCCATTTTGTCATATTaaaaaag
caaacaatatcTTTGATCTAGGCAAGATAGGTCAAAGTGGACTATTTTCT
TGCTATATATTTCTCCCCTTTTGTAGATACAACGACATTTACACATTTGA
TTACATCAGCAGTGGTGTCCACAACATCATCGTTGGACAACTCTGGATCG
AATTGGTGAGATTGAAGAAATATCTCTTCACTAGTAGTAGTTCTGTAAAT
TAGTCtttgtttaacgttcatctaacgttaattGAATGTTAGGGACGTAA
AATGGACGTAGTTATGATGTGATGTACCAACTGGGTTTGGTTTTAGCCAA
TCGAAGGTCTTTCGTTTTCTTGAATATCATCTACAAAGcatattttcttt
tgtattcaaaAACACATAGTCGGTGTCAGGCTTCGTTTTATTGAGCTGAA
CGCTTTTTAACATTAAAACTGTTGTGTTCATTACAGTACGGTTCATGCAC
GATACGCAACCAGACAACGGGAGAAAGCGCAACCATCACCTTCAAACCTG
CCGGTTGGTTCAGCAAGGAGATGAACCAAGTCGAAGGATACATCTTCAAC
CAAAAGTAACAACAATTTCCACTGAGCCTTCATTCATCGCCATAAATATC
AATAAACACATTTCCCTTGAACATATCCTTATAAGAACTTAAAAGAGATG
GCGAAAGAGGGTTAGAAAACAAAACATTAGCAACACAGTCAACAACACAA
AAGCTTTCCTTGCATTTTAGATTTGGTCAATATATACTTAATATTATCCC
AACTCCTGAAGACTAGTATTTTCACACTGATACTGTTTACGCTTGactct
aggaaagaaaaagtgaCATATTTGCGTTCGGATTGGACGAAGTATGTTTG
TTCATGCCCGATCAAACACGAATCAGCATTACAAAACGCTCTGAAAGGAC
CACTGAGTGAAGATGATATCGAGTTATGTAAAATACCACCTGAAGCAACC
ATCAATTGGAAAGTCCGGCCCAAACCCTCTATCACTTCTGAGGTAAATCA
ATTCTTATTTGATATTCTAATGGTGCTCTCAACTCAGCTCTCAGTGCTGA
TTGGCCAAATATGAAccgtgtttttattttcattacagATGTACATgatg
acagaatttgccatgGGATTGAACGAGTTGTTAGATGAACACAAAGAAGT
GGTATGAATCTCTTATGTCATTTCTAGTTGATAGGGTTTGCGAAGGCCGC
GAAAGTACAAAACCCGGTTGCTAAAGATTGAGCTCTCAGATTGGTCGATT
TTTCTGCACTATAAAAGCTTCTAAACAATAGCCCCCGATCCAATAAAAAT
GGTTTAATAATATCAGGTGTTGAAAGCTTTACTTTCATTAATGGCTTTTC
CTTTACCTTTCAGGTTGCACCAACAGACTGCAGATATCGTCCTGACTTGC
GTTGCTTGGAAAACGGTGACATGGGTAAGATACCCCCTTTTTACTGCGTT
TATGGTTTCAACGACATCTCAAAGTGAATCCTCCCCTTAAAATAACCGGA
CTTACATTGCTCAtcaaactttcattttcgtAGACGCTGCTGCACAAGAA
AAGATTCGTCTAGAAGAAGCTCAACGAGCACGACGCAAAGAACGCAATGC
TACTGGAGGTACTTGGTCTCCAAGGTATTTCCTATGCTTATTCTCGTCAC
TATAAATATGGAAGAAGCTAAAtatgtattttttaaatttttctcgtGAT
ATTTTGAGAGCAGTCGTCCCTGTACGTAAGCAACTTTCGCTACACTTTGA
CCGCATTATCGAGGATGAAGAGAGATGATACCGGGCTTTTTCTAGTTCAG
AAAAGCACATAGCCACTCGAATTTATTTCTCCTGGATCTTCCTGCACGTC
TTAAACTTGTTGTTGGTCACAAACCCTATACTAATAAATTTGAACCATAA
AATCATTTCGTATTTACTTTCAGGTGGTTTTCATACGATGTCGTCGACCA
CTCTGATTCCAAAGAATGGATGTACACCAACAAGTATTTCGATAGAGACT
TTTCTACATGCCCACAAATCTATGAATAATtactttccatttttttaaca
aaaatttNTTCTACTTGTCCACAAATCTATGAATAAttactttccttttt
ttaaacaaaaattcctTCATTTTTAAACCAAAAGCTATCCAAAAGTACCA
CATTTTCATTCACCATTTCACTTGCACGTAATTTTTCTTTatctgtttct
tttctttactcGTTTTCTAGTCTTAGATGTATCTTAGTGGGGTGCCTTCA
AATGTTTTTAAGAATTATTCATTCCTGGGTTTATTCAAGATTTTGGTGAT
TATTTAAGACAGTGATGTGTTATATAGGAGAGCGTCATCTTATCGAATTG
ACTTGTTCGAGATTGAGGTTAATTTATTTATGGTAATAACACAAACCTCA
CTGTAGGCCAAATTATCCAAATCCTGCATGTTGGGCTGTTGTAGGTTTAT
CGCTCAAATTTGCCATTTCTCGACCCTTTGTTACTTTGAGTATTTTGTAA
CAATTAGAATAATGGAATTTTGATATTTATGtagtaataaaatttaaaat
gcatttttcccaatttttgctttttatttcttagcatattttcttcattt
ctaataataataattgaagattttaattttttttactgtgAATCAAAATA
AGGATCAAGCAATCCTTTTGGCTCAACAAACTGCATGGTACTGTTTGTGG
TAGAGCACATGACATTTACACATTTTATTAGTTATTTTTTGTAtgtaaaa
cttaattttgataCTTAATtgcataaacaaataaaaaaagatttttatga
attaagaaaagtgaaaact

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009198	XLOC_009198	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000240	supercontig	sc0000240:169725..175043 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.77142	0.768474	4.81031	7.30963	13.0807	9.41977	9.33464	11.1563	4.46106	4.89031	5.25575	3.32342	1.83604	1.0878	2.06979	2.86422	24.8015	21.2381	2.84725	3.78056	30.036	29.5807	7.06196	9.04808	16.9653	15.6695	8.57537	10.4391	4.12619	2.28535

Blast

[Close]

BLAST of TCONS_00016469 vs. Swiss-Prot (Human)
Match: OSBL2 (Oxysterol-binding protein-related protein 2 OS=Homo sapiens GN=OSBPL2 PE=1 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 4.257e-118
Identity = 187/430 (43.49%), Postives = 274/430 (63.72%), Query Frame = 2

Query:  278 PRSQKRLPKYRKQLPATMASRNDFSVWNVLKQAVGKDLSRITMPVIFNEPLSFLQRISEYMDYVDILHKATETEDSLERLLLVSVFMISCNASTESRIGKPFNPLLGETFELIREDMDFKICAEQVSHHPPVSALYAES-ESGFELTMTMQPELKFWGKDIEVKPKGGVTIKIPKYNDIYTFDYISSGVHNIIVGQLWIELYGSCTIRNQTTGESATITFKPAGWFSKEMNQVEGYIFNQKKEKVTYLRSDWTKYVCSC-PIKHESALQNALKG------PLSED------DI--------ELCKIPPEATINWKVRPKPSITSEMYMMTEFAMGLNELLDEHKEVVAPTDCRYRPDLRCLENGDMDAAAQEKIRLEEAQRARRKERNATGGTWSPRWFSYDVVDHSDSKEWMYTNKYFDRDFSTCPQIY 1501
            P  +  + K+R  LPA M SR+DFSVW +LK+ VG +LS+ITMP+ FNEPLSFLQRI+EYM++V ++H+A+     LER+  V+ F +S  AS   R GKPFNPLLGET+ELIRED+ F+  +EQVSHHPP+SA ++E     F    ++ P+LKFWGK +E +P+G +T+++ K+N+ YT+   +  VHN+I+G+LWIE YG+  I N  TG    + FKP G F KE+++VEG+I ++ K+K+  +   WT+ +    P+ +ES  +   +G       L ED      D+        E  ++ P + + W++  +P  +++MY  T F + LNEL    ++ + PTDCR RPD+R +ENG+MD A+QEK RLEE QR  R+ER      W  RWF      ++ + +W+Y   YF+R+FS CP IY
Sbjct:   51 PSQENGIQKHRTSLPAPMFSRSDFSVWTILKKCVGLELSKITMPIAFNEPLSFLQRITEYMEHVYLIHRASCQPQPLERMQSVAAFAVSAVASQWERTGKPFNPLLGETYELIREDLGFRFISEQVSHHPPISAFHSEGLNHDFLFHGSIYPKLKFWGKSVEAEPRGTITLELLKHNEAYTWTNPTCCVHNVIIGKLWIEQYGTVEILNHRTGHKCVLHFKPCGLFGKELHKVEGHIQDKNKKKLFMIYGKWTECLWGIDPVSYESFKKQERRGDHLRKAKLDEDSGKADSDVADDVPVAQETVQVIPGSKLLWRINTRPPNSAQMYNFTSFTVSLNELETGMEKTLPPTDCRLRPDIRGMENGNMDLASQEKERLEEKQREARRERAKEEAEWQTRWFYPGNNPYTGTPDWLYAGDYFERNFSDCPDIY 480

The following BLAST results are available for this feature:

BLAST of TCONS_00016469 vs. Swiss-Prot (Human)

BLAST of TCONS_00016469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OSBL2	4.257e-118	43.49	Oxysterol-binding protein-related protein 2 OS=Hom...	[more]

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TCONS_00016469 (transcript) - C. hemisphaerica