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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016460 ID=TCONS_00016460|Name=TCONS_00016460|organism=Clytia hemisphaerica|type=transcript|length=3454bp
TTTTAATTTATCTTTTTAGTATATCTGTCATCATATGATTGTCTAAATTT
GTCATGTATAGTTTATATATGATTTATATTTGTCTATGTTTATGAACTAT
TGTAATTAGGtattaatgggataaactttcgcagggattaaatttcgcgg
ttgggcatatcctcgaaattcaaaaattttgtggagacttaatttcgcgg
gtgacactattgggtggcaatattttcacgatttcgtgacttttactgtc
aaataatgcatgttggttgttgaaatacgctTTATTTGCGCTTCTTTCAT
GCAAGTAGCCATTGAAATAGTATTTATTAGACatttattttgagttttgt
ttagaaatatttcgcggagcccattccaaatttccattgggacttaattt
cgcggattttcgcggatgacacccaaatccgcgaaatccgcgaaatttaa
tccccacgaaagtttatcccattaaagtactcaTTCTACAGTACGGACCT
CGCGTTACAAAGATAATCCAATTGTCTCCAAGAGAAAGTAGTCATGCTTA
ATGTTTGGAATTTTGTGTACTGATAAGGAGAAAAAGTTAAGATCTTTAAA
AACCTTCATATATGAAACTTTAAAACGGAACTAAGGGGAAATCAAATCAT
GACTCGATAAGGTACAGGGAAAATAATCCAACTTCTATTCGTATTTGTGT
ACGAAGTTCTCTTCAGTTGGAcgactagactatgtaaaacaATATACCAA
AAATGTGACAAAAAATTATGAGTGGTTAATAATCTCGCCAGTTTTTAAAT
ACttgaaacaaagaaatattGTTCGCCATTCTTTCTTTTGTATCATCCAT
CAGAAGTCACATCCATACAGTGCGTCCGGAAAAAAgcagaacagatttta
gaaTAATCAATATAAATAATCAATAATTAATAATGGAATTTTTTGCTTAT
TCAAtgcaatattcaatttccaagGTAATAAATgagctttgaaaaaaaga
tGAGTAATTAGGCCATAGTATGTGGCTATCGGGAGAAGCAGGAGTAAGAG
GGTCTATCGCCTTTATTTGCAACCTGGGGGATCGCATGCTTAGCGGGGAG
CGAAACACCTATCCAGCTTCCAGTTACGCTACGTCTTAAAAACTTATTTG
AGGATTTTAGCTCATTTCATCTACGTGCCTTTTTTCCGGACAAACTTTAT
GTGTAGCAAACATCGTTATTATATCGTATTATCTCGACgtatttcaaatg
ttttttgcTTTCTACATACGATTGCACAAGAGTTTCATTTTACATGGTGG
AACATTTTAATGTGAAGAGTTCACTTTGACACGATATCTTCCACGCAAtt
agacaaacaaacaaaaaccaTCAATAATCTCTGTGTTGCTCTTCCAAAGT
TCCGTATTTCCCATGTTCAACTTTTTGTTCGtcaatttctttcaataaaa
ttgcAATGTCAGCACCTATTTTGACGCGCCTCATTTGCCGTTTCATCTGA
CGTTTCGTTAACGTCACTGGCCGCTCGTCAACGTACGTCCAATCAGGGAG
GTCGGTCAACGGACCATACGATGTCGCGTCTTCCGCTTGCCCACGTAAAA
CTCTTGACTTCCCTCCTGCCAGTAGGGCGCTTGAATTAGACAACAATCGA
CATTGAGATGCAATGAAATTCTGAAGTGCATTCGTTGGCcggaataattt
caatgacattTTTTTAGTTATTCTGTTTTTGTTTAGTTATTctaaaagat
aaataaaaatcaatcaatcaatcaatcagtcaatcaatcaatcaatcaat
cagtcaatcagtcaatcaatcaatcaatcaatcagtcaatcagtcaatca
atcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaat
caatcaatcaatcaatcaatcaatcaatcaataaaacaaAGAAGACGTCC
TAACCATTTTAAGAGCAGTAGACAATAACAGCACTGAACTTTTGTAGTTC
tatacaaaataattttaaatatgattgaaaaaaaataaaatttcctaTAT
ACAAAAATCCATCAGGTTAAAAATAATGCATTACAGACTAAAACTTATTT
AAcgaagacaaaaattttttttcttttaatctaAAATATTATTTGAACTG
AACCATCTAATTAGCTTTCCAAGTTCACCATTAAAGTTTTACCATACTGA
AGATCAGCTTAATTGCATTCCAGCTCTTCACCAAAGTTaaccaaaatgtt
aaaataattttatcttATGATCAGAGATCAACTAAACGTATTTAATTCGA
AAATTACCAAGTTGATCCATAAAATCCTTCTGGTAAGAATTATCAGATAT
TGACATTGAAGAAAGACACGTTTTCCCGATTCGCCTCTTTGCTGCACCAC
TATTCAAAACAACTCATCCTTCTTTCCATCACCTATGCACCCTGTAACTC
GATTCTGAAGGTGCACGCTTGCTCCCATTTTCTGAACTGTTGAAGTTTGG
AGAAGGTGGCATCCACATTTTCTCTTCATCTCTTAATTGGTTGTTGTGGT
AAAACGACTTTTCGCCTCCACCAGTAGGATTGTTGTATCTCTGGTAACGA
TCGCTCTGATTGGATGACTGCTGAAAACGACTGTTTTGATTGGACgaagt
tgaaaaattatcattttgattggAGGGCGGAGAAAATTGAGAGTTTTGAT
TGGCTGATTGAGAGAATGGATTTGTTGAAGAAGGCGAAGAGTGACGATCA
TTGTGATTGGGTGAAGCATTTGGAAGTTTGGACATCATGGAGTAAGTAGG
GGAGGTTTGTAGgccattgttttgattgttgAAGGCGAGAGGAGAGGGTT
GAGGTGTTTGGTAGTTGTTGGAAGGTTGCTGTTGATAGTCCAAATATTTC
GATTGTTGTGGGTAGTATTGTAAGGAGGATGGCCCAGAATATTGTTGTGT
CAGCGGCGcatgaaatttctaaaaaaaagaaaaaaacaagtgaAAGAACT
TAGTAGTTAGGGGGTCTGATCCCCCATCTCCACCTCCCCATCCTTGGCAT
TGACCTCCAACTTGAAAAACAATGATCCCACAATAAAAGGGAAGAATAAC
TGAATAAAtagaatttctttgaaaatgcttTATCGAAAAGAAAAGATTCA
GAAAGCCGTCGAATCACGAAACATAAATCTCCTGATCAGGCCTTTCAACC
TACATTAGGACGAGATGTGGAGGACACAGAATTGCTCCTTCCCTGAGGTA
GCCCTCCTCCGCCATTTCCTCCTTGATGGAACTCCAGATCTTTAATGCGA
CTGTTGATGCGTTCTTTTTCTTGCATGAGCTGGCAATATTCTTGATATTC
TCGCTGCTGGTATTGCATCTGGACATTGAAAGGTGAAGGAGGATGTTAAT
GAAATAAACTacagtatttttctttttagaatgAACAACTGGATTAGATT
ATTT Run BLAST on NCBI transcript from alignment at sc0000240:68941..72521+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016460 ID=TCONS_00016460|Name=TCONS_00016460|organism=Clytia hemisphaerica|type=transcript|length=3581bp|location=Sequence derived from alignment at sc0000240:68941..72521+ (Clytia hemisphaerica)
TTTTAATTTATCTTTTTAGTATATCTGTCATCATATGATTGTCTAAATTT
GTCATGTATAGTTTATATATGATTTATATTTGTCTATGTTTATGAACTAT
TGTAATTAGGtattaatgggataaactttcgcagggattaaatttcgcgg
ttgggcatatcctcgaaattcaaaaattttgtggagacttaatttcgcgg
gtgacactattgggtggcaatattttcacgatttcgtgacttttactgtc
aaataatgcatgttggttgttgaaatacgctTTATTTGCGCTTCTTTCAT
GCAAGTAGCCATTGAAATAGTATTTATTAGACatttattttgagttttgt
ttagaaatatttcgcggagcccattccaaatttccattgggacttaattt
cgcggattttcgcggatgacacccaaatccgcgaaatccgcgaaatttaa
tccccacgaaagtttatcccattaaagtactcaTTCTACAGTACGGACCT
CGCGTTACAAAGATAATCCAATTGTCTCCAAGAGAAAGTAGTCATGCTTA
ATGTTTGGAATTTTGTGTACTGATAAGGAGAAAAAGTTAAGATCTTTAAA
AACCTTCATATATGAAACTTTAAAACGGAACTAAGGGGAAATCAAATCAT
GACTCGATAAGGTACAGGGAAAATAATCCAACTTCTATTCGTATTTGTGT
ACGAAGTTCTCTTCAGTTGGAcgactagactatgtaaaacaATATACCAA
AAATGTGACAAAAAATTATGAGTGGTTAATAATCTCGCCAGTTTTTAAAT
ACttgaaacaaagaaatattGTTCGCCATTCTTTCTTTTGTATCATCCAT
CAGAAGTCACATCCATACAGTGCGTCCGGAAAAAAgcagaacagatttta
gaaTAATCAATATAAATAATCAATAATTAATAATGGAATTTTTTGCTTAT
TCAAtgcaatattcaatttccaagGTAATAAATgagctttgaaaaaaaga
tGAGTAATTAGGCCATAGTATGTGGCTATCGGGAGAAGCAGGAGTAAGAG
GGTCTATCGCCTTTATTTGCAACCTGGGGGATCGCATGCTTAGCGGGGAG
CGAAACACCTATCCAGCTTCCAGTTACGCTACGTCTTAAAAACTTATTTG
AGGATTTTAGCTCATTTCATCTACGTGCCTTTTTTCCGGACAAACTTTAT
GTGTAGCAAACATCGTTATTATATCGTATTATCTCGACgtatttcaaatg
ttttttgcTTTCTACATACGATTGCACAAGAGTTTCATTTTACATGGTGG
AACATTTTAATGTGAAGAGTTCACTTTGACACGATATCTTCCACGCAAtt
agacaaacaaacaaaaaccaTCAATAATCTCTGTGTTGCTCTTCCAAAGT
TCCGTATTTCCCATGTTCAACTTTTTGTTCGtcaatttctttcaataaaa
ttgcAATGTCAGCACCTATTTTGACGCGCCTCATTTGCCGTTTCATCTGA
CGTTTCGTTAACGTCACTGGCCGCTCGTCAACGTACGTCCAATCAGGGAG
GTCGGTCAACGGACCATACGATGTCGCGTCTTCCGCTTGCCCACGTAAAA
CTCTTGACTTCCCTCCTGCCAGTAGGGCGCTTGAATTAGACAACAATCGA
CATTGAGATGCAATGAAATTCTGAAGTGCATTCGTTGGCcggaataattt
caatgacattTTTTTAGTTATTCTGTTTTTGTTTAGTTATTctaaaagat
aaataaaaatcaatcaatcaatcaatcagtcaatcaatcaatcaatcaat
cagtcaatcagtcaatcaatcaatcaatcaatcagtcaatcagtcaatca
atcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaat
caatcaatcaatcaatcaatcaatcaatcaataaaacaaAGAAGACGTCC
TAACCATTTTAAGAGCAGTAGACAATAACAGCACTGAACTTTTGTAGTTC
tatacaaaataattttaaatatgattgaaaaaaaataaaatttcctaTAT
ACAAAAATCCATCAGGTTAAAAATAATGCATTACAGACTAAAACTTATTT
AAcgaagacaaaaattttttttcttttaatctaAAATATTATTTGAACTG
AACCATCTAATTAGCTTTCCAAGTTCACCATTAAAGTTTTACCATACTGA
AGATCAGCTTAATTGCATTCCAGCTCTTCACCAAAGTTaaccaaaatgtt
aaaataattttatcttATGATCAGAGATCAACTAAACGTATTTAATTCGA
AAATTACCAAGTTGATCCATAAAATCCTTCTGGTAAGAATTATCAGATAT
TGACATTGAAGAAAGACACGTTTTCCCGATTCGCCTCTTTGCTGCACCAC
TATTCAAAACAACTCATCCTTCTTTCCATCACCTATGCACCCTGTAACTC
GATTCTGAAGGTGCACGCTTGCTCCCATTTTCTGAACTGTTGAAGTTTGG
AGAAGGTGGCATCCACATTTTCTCTTCATCTCTTAATTGGTTGTTGTGGT
AAAACGACTTTTCGCCTCCACCAGTAGGATTGTTGTATCTCTGGTAACGA
TCGCTCTGATTGGATGACTGCTGAAAACGACTGTTTTGATTGGACgaagt
tgaaaaattatcattttgattggAGGGCGGAGAAAATTGAGAGTTTTGAT
TGGCTGATTGAGAGAATGGATTTGTTGAAGAAGGCGAAGAGTAACGATCA
TTGTGATTGGGTGAAGCATTTGGAAGTTTGGACANGATCATTTTGATTAG
AGGGGGGAGAAAATTGAGAGTTTTGATTGGCTGATTGAGAGAATGGATTT
GTTGAAGAAGGCGAAGAGTGACGATCATTGTGATTGGGTGAAGCATTTGG
AAGTTTGGACATCATGGAGTAAGTAGGGGAGGTTTGTAGgccattgtttt
gattgttgAAGGCGAGAGGAGAGGGTTGAGGTGTTTGGTAGTTGTTGGAA
GGTTGCTGTTGATAGTCCAAATATTTCGATTGTTGTGGGTAGTATTGTAA
GGAGGATGGCCCAGAATATTGTTGTGTCAGCGGCGcatgaaatttctaaa
aaaaagaaaaaaacaagtgaAAGAACTTAGTAGTTAGGGGGTCTGATCCC
CCATCTCCACCTCCCCATCCTTGGCATTGACCTCCAACTTGAAAAACAAT
GATCCCACAATAAAAGGGAAGAATAACTGAATAAAtagaatttctttgaa
aatgcttTATCGAAAAGAAAAGATTCAGAAAGCCGTCGAATCACGAAACA
TAAATCTCCTGATCAGGCCTTTCAACCTACATTAGGACGAGATGTGGAGG
ACACAGAATTGCTCCTTCCCTGAGGTAGCCCTCCTCCGCCATTTCCTCCT
TGATGGAACTCCAGATCTTTAATGCGACTGTTGATGCGTTCTTTTTCTTG
CATGAGCTGGCAATATTCTTGATATTCTCGCTGCTGGTATTGCATCTGGA
CATTGAAAGGTGAAGGAGGATGTTAATGAAATAAACTacagtatttttct
ttttagaatgAACAACTGGATTAGATTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016460-exon-sc0000240-1491911889:68941..71673 | TCONS_00016460-exon-sc0000240-1491911889:68941..71673 | Clytia hemisphaerica | exon |
| TCONS_00016460-exon-sc0000240-1510915933:68941..71673 | TCONS_00016460-exon-sc0000240-1510915933:68941..71673 | Clytia hemisphaerica | exon |
| TCONS_00016460-exon-sc0000240-1575043694:68941..71673 | TCONS_00016460-exon-sc0000240-1575043694:68941..71673 | Clytia hemisphaerica | exon |
| TCONS_00016460-exon-sc0000240-1491911889:71801..72521 | TCONS_00016460-exon-sc0000240-1491911889:71801..72521 | Clytia hemisphaerica | exon |
| TCONS_00016460-exon-sc0000240-1510915933:71801..72521 | TCONS_00016460-exon-sc0000240-1510915933:71801..72521 | Clytia hemisphaerica | exon |
| TCONS_00016460-exon-sc0000240-1575043694:71801..72521 | TCONS_00016460-exon-sc0000240-1575043694:71801..72521 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000240 | supercontig | sc0000240:68941..72521 + |
Blast
The following BLAST results are available for this feature:
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