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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016459 ID=TCONS_00016459|Name=TCONS_00016459|organism=Clytia hemisphaerica|type=transcript|length=610bp
AAACatcataaaaacaattattctaTATAAATTGGTGACCCATTGTCAAC
GAGATCATATCAGCTTTACCTTCCATCAATTCAAGACATTATCTTCTCCA
GGCTTATCTCATTATTCAGCAATGAATCCTACTTTGGTATTTTTCACATT
GGCCATCGTGTCACTTTCATCTGCATATACATTGAAGAACCCTGGACACG
ACAATCCTGGACACGGGCACGATACAATGATGAGTGGAGGAAGAGCAGCA
AGAGATTACGTCATGAGACGTGACAACACATTTTTCCGCCGTGAAGTTTG
CATCAACAAAATCCCGAACGAAGATTGTTCAGAAGCTTTCATGTCACATG
GATTCACTTGTAACACCTCCGAGTTTCCATTCGAAGAGAAATGCCGCAAA
TATTGCGAATTCTGTGTATAACTTTTTCACACCTACACCTAGAAGAAcaa
cttcaaattttgtttgGAAATGTCGATTATATTTAAATCATATATGGAAC
TGATCTTAGTAATCTTAGTAATCTTATTTATAGTAGTTTGATTATGTCTT
ATGACCAatattgttttcttttgtttctttgaaagaagataaattataat
taaaagtcat Run BLAST on NCBI protein sequence of TCONS_00016459-protein >TCONS_00016459-protein ID=TCONS_00016459-protein|Name=TCONS_00016459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
NIIKTIILYKLVTHCQRDHISFTFHQFKTLSSPGLSHYSAMNPTLVFFTL
AIVSLSSAYTLKNPGHDNPGHGHDTMMSGGRAARDYVMRRDNTFFRREVC
INKIPNEDCSEAFMSHGFTCNTSEFPFEEKCRKYCEFCV Run BLAST on NCBI transcript from alignment at sc0000240:64432..65691+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016459 ID=TCONS_00016459|Name=TCONS_00016459|organism=Clytia hemisphaerica|type=transcript|length=1260bp|location=Sequence derived from alignment at sc0000240:64432..65691+ (Clytia hemisphaerica)
AAACatcataaaaacaattattctaTATAAATTGGTGACCCATTGTCAAC
GAGATCATATCAGCTTTACCTTCCATCAATTCAAGACATTATCTTCTCCA
GGCTTATCTCATTATTCAGCAATGAATCCTACTTTGGTATTTTTCACATT
GGCCATCGTGTCACTTTCATCTGCATGTAAGTATTTTCAATGCAATCCTA
AGACAGGTCTGAGACAGCTTTATTCAATGCAGCCTTGAGTTCGTCATGCC
ATCTGAGAGTCCTGAGATTTATTTTTAGCTTTGTTTGGTAGAATTTAATT
AGCAAGATGAATTCATACAAATTTATCTAAATAAGAAGAGGGTGTTGGAA
TTTCAAAAGATGGGAACTGGAAATAAAGTGTCCAATTTTACACGAAGATT
AACAAGGGCGTTTTAGCCAAAAGTGACTAGTTATTTTCATATGTTAATCG
ACTTTTTTCAGATACATTGAAGAACCCTGGACACGACAATCCTGGACACG
GGCACGATACAATGATGAGTGGAGGAAGAGCAGCAAGAGGTTAGTTGCAA
GCAAATATTTTccaaacttaaattttgttgtatTGGTTGAAACCCGATGG
GTAAACGGTACATGCCTACTGTACGTGCAGTCCTTAAATGTcccttttcc
aagcttcccaaagtgcactgtaagggtcgaaataagcaaagatgagaaaa
agtgcaCCGATTTTTCCGCCCAAAGTTACTCATATTAATTGCtgaatttt
ctctgcactgtcagggtccgatttcaaaggcctagtTTTGGGCTGCACGT
GATATTACTTCCAATCTGACATGGCATggttttatttcccatccaagagt
ctAAACTCTTAAACTGAATGGTATTAATCATTGCTTGTTATCTTGTATTC
TTAGATTACGTCATGAGACGTGACAACACATTTTTCCGCCGTGAAGTTTG
CATCAACAAAATCCCGAACGAAGATTGTTCAGAAGCTTTCATGTCACATG
GATTCACTTGTAACACCTCCGAGTTTCCATTCGAAGAGAAATGCCGCAAA
TATTGCGAATTCTGTGTATAACTTTTTCACACCTACACCTAGAAGAAcaa
cttcaaattttgtttgGAAATGTCGATTATATTTAAATCATATATGGAAC
TGATCTTAGTAATCTTAGTAATCTTATTTATAGTAGTTTGATTATGTCTT
ATGACCAatattgttttcttttgtttctttgaaagaagataaattataat
taaaagtcat Coding sequence (CDS) from alignment at sc0000240:64432..65691+ >TCONS_00016459 ID=TCONS_00016459|Name=TCONS_00016459|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0000240:64432..65691+ (Clytia hemisphaerica)
AACatcataaaaacaattattctaTATAAATTGGTGACCCATTGTCAACG
AGATCATATCAGCTTTACCTTCCATCAATTCAAGACATTATCTTCTCCAG
GCTTATCTCATTATTCAGCAATGAATCCTACTTTGGTATTTTTCACATTG
GCCATCGTGTCACTTTCATCTGCATATACATTGAAGAACCCTGGACACGA
CAATCCTGGACACGGGCACGATACAATGATGAGTGGAGGAAGAGCAGCAA
GAGATTACGTCATGAGACGTGACAACACATTTTTCCGCCGTGAAGTTTGC
ATCAACAAAATCCCGAACGAAGATTGTTCAGAAGCTTTCATGTCACATGG
ATTCACTTGTAACACCTCCGAGTTTCCATTCGAAGAGAAATGCCGCAAAT
ATTGCGAATTCTGTGTATAAAACatcataaaaacaattattctaTATAAA
TTGGTGACCCATTGTCAACGAGATCATATCAGCTTTACCTTCCATCAATT
CAAGACATTATCTTCTCCAGGCTTATCTCATTATTCAGCAATGAATCCTA
CTTTGGTATTTTTCACATTGGCCATCGTGTCACTTTCATCTGCATATACA
TTGAAGAACCCTGGACACGACAATCCTGGACACGGGCACGATACAATGAT
GAGTGGAGGAAGAGCAGCAAGAGATTACGTCATGAGACGTGACAACACAT
TTTTCCGCCGTGAAGTTTGCATCAACAAAATCCCGAACGAAGATTGTTCA
GAAGCTTTCATGTCACATGGATTCACTTGTAACACCTCCGAGTTTCCATT
CGAAGAGAAATGCCGCAAATATTGCGAATTCTGTGTATAAAACatcataa
aaacaattattctaTATAAATTGGTGACCCATTGTCAACGAGATCATATC
AGCTTTACCTTCCATCAATTCAAGACATTATCTTCTCCAGGCTTATCTCA
TTATTCAGCAATGAATCCTACTTTGGTATTTTTCACATTGGCCATCGTGT
CACTTTCATCTGCATATACATTGAAGAACCCTGGACACGACAATCCTGGA
CACGGGCACGATACAATGATGAGTGGAGGAAGAGCAGCAAGAGATTACGT
CATGAGACGTGACAACACATTTTTCCGCCGTGAAGTTTGCATCAACAAAA
TCCCGAACGAAGATTGTTCAGAAGCTTTCATGTCACATGGATTCACTTGT
AACACCTCCGAGTTTCCATTCGAAGAGAAATGCCGCAAATATTGCGAATT
CTGTGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016459-exon-sc0000240-1491911889:64432..64607 | TCONS_00016459-exon-sc0000240-1491911889:64432..64607 | Clytia hemisphaerica | exon |
| TCONS_00016459-exon-sc0000240-1510915933:64432..64607 | TCONS_00016459-exon-sc0000240-1510915933:64432..64607 | Clytia hemisphaerica | exon |
| TCONS_00016459-exon-sc0000240-1575043694:64432..64607 | TCONS_00016459-exon-sc0000240-1575043694:64432..64607 | Clytia hemisphaerica | exon |
| TCONS_00016459-exon-sc0000240-1491911889:64893..64970 | TCONS_00016459-exon-sc0000240-1491911889:64893..64970 | Clytia hemisphaerica | exon |
| TCONS_00016459-exon-sc0000240-1510915933:64893..64970 | TCONS_00016459-exon-sc0000240-1510915933:64893..64970 | Clytia hemisphaerica | exon |
| TCONS_00016459-exon-sc0000240-1575043694:64893..64970 | TCONS_00016459-exon-sc0000240-1575043694:64893..64970 | Clytia hemisphaerica | exon |
| TCONS_00016459-exon-sc0000240-1491911889:65336..65691 | TCONS_00016459-exon-sc0000240-1491911889:65336..65691 | Clytia hemisphaerica | exon |
| TCONS_00016459-exon-sc0000240-1510915933:65336..65691 | TCONS_00016459-exon-sc0000240-1510915933:65336..65691 | Clytia hemisphaerica | exon |
| TCONS_00016459-exon-sc0000240-1575043694:65336..65691 | TCONS_00016459-exon-sc0000240-1575043694:65336..65691 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000240 | supercontig | sc0000240:64432..65691 + |
Blast
The following BLAST results are available for this feature:
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