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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016450 ID=TCONS_00016450|Name=TCONS_00016450|organism=Clytia hemisphaerica|type=transcript|length=1457bp
GGGAGGAGTTTGCATTTGGTGAATTACTTTGAGAAGAATCACTTTTGTAT
GTGCAAACAGCAACGTGGTGTCTGCCTTTACAattaaaacatttcatttt
atttgaacatttttgagcaCGATGTCCAATTTTCATACAAATAAAGCAAC
GGttctccttttgtaaaatagtTTTACGAATTTCCGGTTTCGTTATAATA
TCACAATCTCTAGATCTGTGACCTCTCcgacaaaaaatacaaatcagTTT
TTGATTATCCTCCTTTCTATGAAATTCTCGTTTCTGCTTGTTTTCGAACT
TTGAACTAACATGTAGGGATGCACCAGAACACGCGTATGCACCCTCCTCC
GTATATGAGGTGCTGACTTTCTCTCTCGCTTCTAGTTCTGTCAAAAAAGT
GTTCATTATTTTGGAAATGTCCCATTTTTGATTCTTTTCCAAAGTTCTCG
AAACGATCAGTTTGATTTCTACAGGAATCTTGTTCAGCAAAATAGGTGAT
AGCATTGGACCATATTCCTTTTGATCTAAGCCCAAAGTTTCAAGATTTCG
AATAGCAAATTCGATTGAATCATGAAGTTTTCGCAGTTCTTTTAAGTTTT
CTACATTTGCACAAGGTGGTATATCTAAAAGCTGCGACATATGATGCGAA
ATTAAAACTTGTGTATCGCCAAATCTCTGCTCCAGCATCTCTCtcgcttt
atcataattttcAGCAGAAAGTCTAAGTCCTTTTATAGCGTCAGCGGCTT
CATCGATTAAATAACTTTTTAGATACTGAAACTTTTCAATGTTCGACAAG
TTTCTATTCGAATGAACAACTGCTTCAAACGATTCATTAAATGAAATCCA
TTCCTCAGGATTTCCAGAAAATTCTTGTACGACCATTTTTGGGAGcttaa
catttttaaaatgttctttaggTTTCGACGGTTCAACGACGGTAGCGCGT
GCAAATTCTACAGCTGAACTCACAGCAGACTGCTTCAATGCGATAAAGTT
TCTCAAAACAGTTAATTTTTCGGTAAATTTTACCTCACTTTTCACCGATT
CCTCGATTTCTTTCTGGAGCTGCTCTGGATCTTCGATCGACTCCGCGATG
ACCTCGGACAACTCAATAATTTTATTGAACTTGTTAACCGCCAAGTTCTC
AACTGAAATAATATGATTCAAATTTCCATCGTACTGTTCCAACTTTCTTT
CGACGTCGTCGAACAATTTGTTAAGGTAAACGATTAATCCTGTACGCGAT
CTCTTCGGATTTTTGTCAGCCACAGCCATaataacaaaaatcaaaacaca
aaattcaTGAATTCACAAACTCAATTTCACCacgaaattaaaatcaaaaa
accaTAAACTCAAATCCAAATTAATATTAAATCCGGTTTCTCGTGTGGAC
CATAAAAAGAATCTCCAAGAAAAATTGACAACCGTCCGATACGGGTCTAA
ACGTGaa Run BLAST on NCBI protein sequence of TCONS_00016450-protein >TCONS_00016450-protein ID=TCONS_00016450-protein|Name=TCONS_00016450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=426bp
MAVADKNPKRSRTGLIVYLNKLFDDVERKLEQYDGNLNHIISVENLAVNK
FNKIIELSEVIAESIEDPEQLQKEIEESVKSEVKFTEKLTVLRNFIALKQ
SAVSSAVEFARATVVEPSKPKEHFKNVKLPKMVVQEFSGNPEEWISFNES
FEAVVHSNRNLSNIEKFQYLKSYLIDEAADAIKGLRLSAENYDKAREMLE
QRFGDTQVLISHHMSQLLDIPPCANVENLKELRKLHDSIEFAIRNLETLG
LDQKEYGPMLSPILLNKIPVEIKLIVSRTLEKNQKWDISKIMNTFLTELE
AREKVSTSYTEEGAYACSGASLHVSSKFENKQKREFHRKEDNQKLICIFC
RRGHRSRDCDIITKPEIRKTILQKENRCFICMKIGHRAQKCSNKMKCFNC
KGRHHVAVCTYKSDSSQSNSPNANSS Run BLAST on NCBI transcript from alignment at sc0000237:257000..258456 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016450 ID=TCONS_00016450|Name=TCONS_00016450|organism=Clytia hemisphaerica|type=transcript|length=1457bp|location=Sequence derived from alignment at sc0000237:257000..258456 (Clytia hemisphaerica)
ttCACGTTTAGACCCGTATCGGACGGTTGTCAATTTTTCTTGGAGATTCT
TTTTATGGTCCACACGAGAAACCGGATTTAATATTAATTTGGATTTGAGT
TTAtggttttttgattttaatttcgtGGTGAAATTGAGTTTGTGAATTCA
tgaattttgtgttttgatttttgttattATGGCTGTGGCTGACAAAAATC
CGAAGAGATCGCGTACAGGATTAATCGTTTACCTTAACAAATTGTTCGAC
GACGTCGAAAGAAAGTTGGAACAGTACGATGGAAATTTGAATCATATTAT
TTCAGTTGAGAACTTGGCGGTTAACAAGTTCAATAAAATTATTGAGTTGT
CCGAGGTCATCGCGGAGTCGATCGAAGATCCAGAGCAGCTCCAGAAAGAA
ATCGAGGAATCGGTGAAAAGTGAGGTAAAATTTACCGAAAAATTAACTGT
TTTGAGAAACTTTATCGCATTGAAGCAGTCTGCTGTGAGTTCAGCTGTAG
AATTTGCACGCGCTACCGTCGTTGAACCGTCGAAAcctaaagaacatttt
aaaaatgttaagCTCCCAAAAATGGTCGTACAAGAATTTTCTGGAAATCC
TGAGGAATGGATTTCATTTAATGAATCGTTTGAAGCAGTTGTTCATTCGA
ATAGAAACTTGTCGAACATTGAAAAGTTTCAGTATCTAAAAAGTTATTTA
ATCGATGAAGCCGCTGACGCTATAAAAGGACTTAGACTTTCTGCTgaaaa
ttatgataaagcgaGAGAGATGCTGGAGCAGAGATTTGGCGATACACAAG
TTTTAATTTCGCATCATATGTCGCAGCTTTTAGATATACCACCTTGTGCA
AATGTAGAAAACTTAAAAGAACTGCGAAAACTTCATGATTCAATCGAATT
TGCTATTCGAAATCTTGAAACTTTGGGCTTAGATCAAAAGGAATATGGTC
CAATGCTATCACCTATTTTGCTGAACAAGATTCCTGTAGAAATCAAACTG
ATCGTTTCGAGAACTTTGGAAAAGAATCAAAAATGGGACATTTCCAAAAT
AATGAACACTTTTTTGACAGAACTAGAAGCGAGAGAGAAAGTCAGCACCT
CATATACGGAGGAGGGTGCATACGCGTGTTCTGGTGCATCCCTACATGTT
AGTTCAAAGTTCGAAAACAAGCAGAAACGAGAATTTCATAGAAAGGAGGA
TAATCAAAAActgatttgtattttttgtcgGAGAGGTCACAGATCTAGAG
ATTGTGATATTATAACGAAACCGGAAATTCGTAAAactattttacaaaag
gagaaCCGTTGCTTTATTTGTATGAAAATTGGACATCGtgctcaaaaatg
ttcaaataaaatgaaatgttttaatTGTAAAGGCAGACACCACGTTGCTG
TTTGCACATACAAAAGTGATTCTTCTCAAAGTAATTCACCAAATGCAAAC
TCCTCCC Coding sequence (CDS) from alignment at sc0000237:257000..258456 >TCONS_00016450 ID=TCONS_00016450|Name=TCONS_00016450|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at sc0000237:257000..258456 (Clytia hemisphaerica)
ATGGCTGTGGCTGACAAAAATCCGAAGAGATCGCGTACAGGATTAATCGT
TTACCTTAACAAATTGTTCGACGACGTCGAAAGAAAGTTGGAACAGTACG
ATGGAAATTTGAATCATATTATTTCAGTTGAGAACTTGGCGGTTAACAAG
TTCAATAAAATTATTGAGTTGTCCGAGGTCATCGCGGAGTCGATCGAAGA
TCCAGAGCAGCTCCAGAAAGAAATCGAGGAATCGGTGAAAAGTGAGGTAA
AATTTACCGAAAAATTAACTGTTTTGAGAAACTTTATCGCATTGAAGCAG
TCTGCTGTGAGTTCAGCTGTAGAATTTGCACGCGCTACCGTCGTTGAACC
GTCGAAAcctaaagaacattttaaaaatgttaagCTCCCAAAAATGGTCG
TACAAGAATTTTCTGGAAATCCTGAGGAATGGATTTCATTTAATGAATCG
TTTGAAGCAGTTGTTCATTCGAATAGAAACTTGTCGAACATTGAAAAGTT
TCAGTATCTAAAAAGTTATTTAATCGATGAAGCCGCTGACGCTATAAAAG
GACTTAGACTTTCTGCTgaaaattatgataaagcgaGAGAGATGCTGGAG
CAGAGATTTGGCGATACACAAGTTTTAATTTCGCATCATATGTCGCAGCT
TTTAGATATACCACCTTGTGCAAATGTAGAAAACTTAAAAGAACTGCGAA
AACTTCATGATTCAATCGAATTTGCTATTCGAAATCTTGAAACTTTGGGC
TTAGATCAAAAGGAATATGGTCCAATGCTATCACCTATTTTGCTGAACAA
GATTCCTGTAGAAATCAAACTGATCGTTTCGAGAACTTTGGAAAAGAATC
AAAAATGGGACATTTCCAAAATAATGAACACTTTTTTGACAGAACTAGAA
GCGAGAGAGAAAGTCAGCACCTCATATACGGAGGAGGGTGCATACGCGTG
TTCTGGTGCATCCCTACATGTTAGTTCAAAGTTCGAAAACAAGCAGAAAC
GAGAATTTCATAGAAAGGAGGATAATCAAAAActgatttgtattttttgt
cgGAGAGGTCACAGATCTAGAGATTGTGATATTATAACGAAACCGGAAAT
TCGTAAAactattttacaaaaggagaaCCGTTGCTTTATTTGTATGAAAA
TTGGACATCGtgctcaaaaatgttcaaataaaatgaaatgttttaatTGT
AAAGGCAGACACCACGTTGCTGTTTGCACATACAAAAGTGATTCTTCTCA
AAGTAATTCACCAAATGCAAACTCCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016450-exon-sc0000237-1491911889:257000..258456 | TCONS_00016450-exon-sc0000237-1491911889:257000..258456 | Clytia hemisphaerica | exon |
| TCONS_00016450-exon-sc0000237-1510915933:257000..258456 | TCONS_00016450-exon-sc0000237-1510915933:257000..258456 | Clytia hemisphaerica | exon |
| TCONS_00016450-exon-sc0000237-1575043694:257000..258456 | TCONS_00016450-exon-sc0000237-1575043694:257000..258456 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000237 | supercontig | sc0000237:257000..258456 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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