TCONS_00016449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016449
Unique NameTCONS_00016449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016449 ID=TCONS_00016449|Name=TCONS_00016449|organism=Clytia hemisphaerica|type=transcript|length=432bp
aaaaacaaatcaagTGTACGAGGAAAGGAAATATAATTTACTTAAATCTT
TAAGACGATCCAATGCTAGTGTAGACGAATCATCGAAAGTAACGAAATCT
TGNNNNNNNNNNCCCCCCCCCGGGTTTCAAAGATTCATTCGCAAAAAAGA
GCATagtatcatcagcaaacaaACTGACAAGAGAATAGCAAAGAGCAATA
TGAAGATCATTAACATAAAGGAGAAAGAGTAGAGGGCCTAAAACAGAACC
TTGAGGGACACCATGTTGCATGTGTTTAGAAGAAGAGTTTTTACCAGAGA
CTGAAACAAACTGTGATCTTTCTAAAAGAAATGATCGAAACCATTCAAGA
GCTTTCCCACGAACCCCATAAAAATCTAGCTTTGACAGTAAAATAGAGTG
ATCAACGGTATCAAATGCCTTTTGTAAATCNN
Run BLAST on NCBI

protein sequence of TCONS_00016449-protein

>TCONS_00016449-protein ID=TCONS_00016449-protein|Name=TCONS_00016449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
DLQKAFDTVDHSILLSKLDFYGVRGKALEWFRSFLLERSQFVSVSGKNSS
SKHMQHGVPQGSVLGPLLFLLYVNDLHIALCYSLVSLFADDTMLFFANES
LKPGGGXXXXRFRYFR
Run BLAST on NCBI

transcript from alignment at sc0000237:252324..252755

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016449 ID=TCONS_00016449|Name=TCONS_00016449|organism=Clytia hemisphaerica|type=transcript|length=432bp|location=Sequence derived from alignment at sc0000237:252324..252755 (Clytia hemisphaerica)
NNGATTTACAAAAGGCATTTGATACCGTTGATCACTCTATTTTACTGTCA
AAGCTAGATTTTTATGGGGTTCGTGGGAAAGCTCTTGAATGGTTTCGATC
ATTTCTTTTAGAAAGATCACAGTTTGTTTCAGTCTCTGGTAAAAACTCTT
CTTCTAAACACATGCAACATGGTGTCCCTCAAGGTTCTGTTTTAGGCCCT
CTACTCTTTCTCCTTTATGTTAATGATCTTCATATTGCTCTTTGCTATTC
TCTTGTCAGTttgtttgctgatgatactATGCTCTTTTTTGCGAATGAAT
CTTTGAAACCCGGGGGGGGGNNNNNNNNNNCAAGATTTCGTTACTTTCGA
TGATTCGTCTACACTAGCATTGGATCGTCTTAAAGATTTAAGTAAATTAT
ATTTCCTTTCCTCGTACActtgatttgttttt

Coding sequence (CDS) from alignment at sc0000237:252324..252755

>TCONS_00016449 ID=TCONS_00016449|Name=TCONS_00016449|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0000237:252324..252755 (Clytia hemisphaerica)
GATTTACAAAAGGCATTTGATACCGTTGATCACTCTATTTTACTGTCAAA
GCTAGATTTTTATGGGGTTCGTGGGAAAGCTCTTGAATGGTTTCGATCAT
TTCTTTTAGAAAGATCACAGTTTGTTTCAGTCTCTGGTAAAAACTCTTCT
TCTAAACACATGCAACATGGTGTCCCTCAAGGTTCTGTTTTAGGCCCTCT
ACTCTTTCTCCTTTATGTTAATGATCTTCATATTGCTCTTTGCTATTCTC
TTGTCAGTttgtttgctgatgatactATGCTCTTTTTTGCGAATGAATCT
TTGAAACCCGGGGGGGGGNNNNNNNNNNCAAGATTTCGTTACTTTCGATG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009186XLOC_009186Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016449-proteinTCONS_00016449-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016449-exon-sc0000237-1491911889:252324..252755TCONS_00016449-exon-sc0000237-1491911889:252324..252755Clytia hemisphaericaexon
TCONS_00016449-exon-sc0000237-1510915933:252324..252755TCONS_00016449-exon-sc0000237-1510915933:252324..252755Clytia hemisphaericaexon
TCONS_00016449-exon-sc0000237-1575043694:252324..252755TCONS_00016449-exon-sc0000237-1575043694:252324..252755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:252324..252755 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.50953	1.50592	1.80133	0.957904	1.4024	0.991651	1.90292	1.05971	0.485236	0.872593	0.322365	0.847641	0.814933	0.486035	0.307632	0.387787	1.11689	0.73127	0.169119	0	1.01076	0.415212	0.535799	0.556583	0.341622	1.90693	1.24212	0	0.755564	0.925358
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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