|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016448 ID=TCONS_00016448|Name=TCONS_00016448|organism=Clytia hemisphaerica|type=transcript|length=1429bp
GTTCCCtacaaaaataatctttaacatAACCAGCTCCTATAGATACAAAA
AAATGTTACACTTACACTTTGAAAATAAATCGATGAAGGTTGAAATAACT
TCACTTGTCTACTTGTCTacttacaaagaaaatttgaccTCTATATATAC
TAGGTCCTNtacaaagaaaatttgaccTCTATATATACTAGGTCCTACTC
CTAAAATAAATGTTAATTGCCTGATTACATAATGGGTTGGGGTTAATGGC
GTTAGCATTAGCATATCAAAATAACAAAGTCGTAAAATAACACATAAGGA
AGGCTTAACAGGAAGGTAATTAGGGTCAAACAAATAGGGGTACAGTAATG
GCAATTAGCCTTCTGAGGAGCAAATATACTTTGATATTGACTTCAATCAT
GCAAATATGGGGAAATGGGGAAGGGGATAAATGGCTTCCTGAGATTATGT
AACCTCAGGCGTCTGCACAAATCCAAGGGTCAATTTGGTAGTGGGTTCAG
AATTTCATTGTAACACGACACATTTTATTTCAGTCCGATTGCAACTCCTA
ATGCACGATGTTTGGTACCAGAGAATACCCATCGGTCACTTGACGTGTAT
GTTCCACATCCCCCAAAATGCATTTCGGTGaacatgaagaaattttcagg
GATTCTTCTGGTGGATTGTGGTCTCTTAGCAGTAGCTCTCCAATCAACAG
CAACACCTTGTCTCTCGTAAACCAAATTGGTAATGTGATAATTGGATACT
GGACGTTCTTTAGGATTCGGGAAAAAAGCGAACAGATTATTTGCTCCAAC
GCCTTTTCCGCAATTCTTATAGGTGACATGTCGATGGTTGGAGATGAAGC
CGAGAGTCTGACCTGCATGTGAATGCACGAATGGATGGGTGCCAAAAAAG
ACATACGGTCCTAGATGTCTGTTAACAGGCTTTGTGTAACCTGTATACGA
GGACAATTGGACAGAAAGACCGTTTGCACGTCTCGGTTTGATCACAGTGA
ACGGTTGTGTCCCATCAACATTTGCTAATCGCAATAAGACATCTTGTTTG
TTTCGGAACAATATGTTAATATCTTGGGGTGTTATTAAGGCAACAGCTTC
ATTCGGGATAAACGTGTAGCCACCACCGTTTATACCCATTTCACAATACA
TTTGATATGCTCCTGATGGTAAGTAGATGGTGTGAATACCACTTTGCGCG
TTTGGGTTGGACTGCAATATTTGCTGGCATGTTGCCGAACATTCGCTCAC
CTTGGAAAATAATACAAAATATGTTAATTATGACTAGAAATCTCGCACCC
ACCTCCAACCAGACGGGTGTCCCAGGTGGAgtactacatgttttttcttt
tataagcataacgtttataagcatatgcaggctcagtttttggtacctaa
acaatggctctattgtttgagaacaatag Run BLAST on NCBI protein sequence of TCONS_00016448-protein >TCONS_00016448-protein ID=TCONS_00016448-protein|Name=TCONS_00016448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MYCEMGINGGGYTFIPNEAVALITPQDINILFRNKQDVLLRLANVDGTQP
FTVIKPRRANGLSVQLSSYTGYTKPVNRHLGPYVFFGTHPFVHSHAGQTL
GFISNHRHVTYKNCGKGVGANNLFAFFPNPKERPVSNYHITNLVYERQGV
AVDWRATAKRPQSTRRIPENFFMFTEMHFGGCGTYTSSDRWVFSGTKHRA
LGVAIGLK Run BLAST on NCBI transcript from alignment at sc0000237:242918..244346 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016448 ID=TCONS_00016448|Name=TCONS_00016448|organism=Clytia hemisphaerica|type=transcript|length=1429bp|location=Sequence derived from alignment at sc0000237:242918..244346 (Clytia hemisphaerica)
ctattgttctcaaacaatagagccattgtttaggtaccaaaaactgagcc
tgcatatgcttataaacgttatgcttataaaagaaaaaacatgtagtacT
CCACCTGGGACACCCGTCTGGTTGGAGGTGGGTGCGAGATTTCTAGTCAT
AATTAACATATTTTGTATTATTTTCCAAGGTGAGCGAATGTTCGGCAACA
TGCCAGCAAATATTGCAGTCCAACCCAAACGCGCAAAGTGGTATTCACAC
CATCTACTTACCATCAGGAGCATATCAAATGTATTGTGAAATGGGTATAA
ACGGTGGTGGCTACACGTTTATCCCGAATGAAGCTGTTGCCTTAATAACA
CCCCAAGATATTAACATATTGTTCCGAAACAAACAAGATGTCTTATTGCG
ATTAGCAAATGTTGATGGGACACAACCGTTCACTGTGATCAAACCGAGAC
GTGCAAACGGTCTTTCTGTCCAATTGTCCTCGTATACAGGTTACACAAAG
CCTGTTAACAGACATCTAGGACCGTATGTCTTTTTTGGCACCCATCCATT
CGTGCATTCACATGCAGGTCAGACTCTCGGCTTCATCTCCAACCATCGAC
ATGTCACCTATAAGAATTGCGGAAAAGGCGTTGGAGCAAATAATCTGTTC
GCTTTTTTCCCGAATCCTAAAGAACGTCCAGTATCCAATTATCACATTAC
CAATTTGGTTTACGAGAGACAAGGTGTTGCTGTTGATTGGAGAGCTACTG
CTAAGAGACCACAATCCACCAGAAGAATCcctgaaaatttcttcatgttC
ACCGAAATGCATTTTGGGGGATGTGGAACATACACGTCAAGTGACCGATG
GGTATTCTCTGGTACCAAACATCGTGCATTAGGAGTTGCAATCGGACTGA
AATAAAATGTGTCGTGTTACAATGAAATTCTGAACCCACTACCAAATTGA
CCCTTGGATTTGTGCAGACGCCTGAGGTTACATAATCTCAGGAAGCCATT
TATCCCCTTCCCCATTTCCCCATATTTGCATGATTGAAGTCAATATCAAA
GTATATTTGCTCCTCAGAAGGCTAATTGCCATTACTGTACCCCTATTTGT
TTGACCCTAATTACCTTCCTGTTAAGCCTTCCTTATGTGTTATTTTACGA
CTTTGTTATTTTGATATGCTAATGCTAACGCCATTAACCCCAACCCATTA
TGTAATCAGGCAATTAACATTTATTTTAGGAGTAGGACCTAGTATATATA
GAggtcaaattttctttgtaNAGGACCTAGTATATATAGAggtcaaattt
tctttgtaagtAGACAAGTAGACAAGTGAAGTTATTTCAACCTTCATCGA
TTTATTTTCAAAGTGTAAGTGTAACATTTTTTTGTATCTATAGGAGCTGG
TTatgttaaagattatttttgtaGGGAAC Coding sequence (CDS) from alignment at sc0000237:242918..244346 >TCONS_00016448 ID=TCONS_00016448|Name=TCONS_00016448|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0000237:242918..244346 (Clytia hemisphaerica)
ATGTATTGTGAAATGGGTATAAACGGTGGTGGCTACACGTTTATCCCGAA
TGAAGCTGTTGCCTTAATAACACCCCAAGATATTAACATATTGTTCCGAA
ACAAACAAGATGTCTTATTGCGATTAGCAAATGTTGATGGGACACAACCG
TTCACTGTGATCAAACCGAGACGTGCAAACGGTCTTTCTGTCCAATTGTC
CTCGTATACAGGTTACACAAAGCCTGTTAACAGACATCTAGGACCGTATG
TCTTTTTTGGCACCCATCCATTCGTGCATTCACATGCAGGTCAGACTCTC
GGCTTCATCTCCAACCATCGACATGTCACCTATAAGAATTGCGGAAAAGG
CGTTGGAGCAAATAATCTGTTCGCTTTTTTCCCGAATCCTAAAGAACGTC
CAGTATCCAATTATCACATTACCAATTTGGTTTACGAGAGACAAGGTGTT
GCTGTTGATTGGAGAGCTACTGCTAAGAGACCACAATCCACCAGAAGAAT
CcctgaaaatttcttcatgttCACCGAAATGCATTTTGGGGGATGTGGAA
CATACACGTCAAGTGACCGATGGGTATTCTCTGGTACCAAACATCGTGCA
TTAGGAGTTGCAATCGGACTGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016448-exon-sc0000237-1491911889:242918..244346 | TCONS_00016448-exon-sc0000237-1491911889:242918..244346 | Clytia hemisphaerica | exon |
| TCONS_00016448-exon-sc0000237-1510915933:242918..244346 | TCONS_00016448-exon-sc0000237-1510915933:242918..244346 | Clytia hemisphaerica | exon |
| TCONS_00016448-exon-sc0000237-1575043694:242918..244346 | TCONS_00016448-exon-sc0000237-1575043694:242918..244346 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000237 | supercontig | sc0000237:242918..244346 . |
Blast
The following BLAST results are available for this feature:
|
